ClCG02G001340 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G001340
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Wound-responsive family protein
Location	CG_Chr02: 1503630 .. 1503878 (-)
RNA-Seq Expression	ClCG02G001340
Synteny	ClCG02G001340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCATCAACAAGAGCTTTGGTCGTAGCAGCTACCGTCGGCGTCGTGGAGGCTCTCAAGGATCAAGGAATCTGCCGGTGGAATCATGTCTTAAGATCCGCCCATCACTACGCCAGAAACCATGTCCGGTCTATTTCTCAGGCCAAGAAGCTTTCCTCCGCCGTGCCTTCCGCCAACCACCTCCAACAGTCCGAGGAATCTCTGAGAACGGTGATGTACCTTAGCTGTTGGGGTCCTAATAACTGA

mRNA sequence

ATGAGTTCATCAACAAGAGCTTTGGTCGTAGCAGCTACCGTCGGCGTCGTGGAGGCTCTCAAGGATCAAGGAATCTGCCGGTGGAATCATGTCTTAAGATCCGCCCATCACTACGCCAGAAACCATGTCCGGTCTATTTCTCAGGCCAAGAAGCTTTCCTCCGCCGTGCCTTCCGCCAACCACCTCCAACAGTCCGAGGAATCTCTGAGAACGGTGATGTACCTTAGCTGTTGGGGTCCTAATAACTGA

Coding sequence (CDS)

ATGAGTTCATCAACAAGAGCTTTGGTCGTAGCAGCTACCGTCGGCGTCGTGGAGGCTCTCAAGGATCAAGGAATCTGCCGGTGGAATCATGTCTTAAGATCCGCCCATCACTACGCCAGAAACCATGTCCGGTCTATTTCTCAGGCCAAGAAGCTTTCCTCCGCCGTGCCTTCCGCCAACCACCTCCAACAGTCCGAGGAATCTCTGAGAACGGTGATGTACCTTAGCTGTTGGGGTCCTAATAACTGA

Protein sequence

MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSANHLQQSEESLRTVMYLSCWGPNN

Homology

[Close]

BLAST of ClCG02G001340 vs. NCBI nr
Match: XP_004136808.1 (uncharacterized protein LOC101223015 [Cucumis sativus] >XP_008455359.1 PREDICTED: uncharacterized protein LOC103495545 [Cucumis melo] >KAA0031605.1 Wound-responsive family protein [Cucumis melo var. makuwa] >KGN43576.1 hypothetical protein Csa_020502 [Cucumis sativus] >TYK07057.1 Wound-responsive family protein [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 1.7e-35
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTRALVVAATVGVVEALKDQGICRWNH+LRSAHHYARNHVRSISQAKKLSSAVPSAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 HLQQSEESLRTVMYLSCWGPNN 83
            QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of ClCG02G001340 vs. NCBI nr
Match: XP_038888472.1 (uncharacterized protein LOC120078309 [Benincasa hispida])

HSP 1 Score: 156.0 bits (393), Expect = 1.4e-34
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTR LVVAATVGVVEALKDQGICRWNH+LRS HHYARNHVRSISQAKKLSS VPSAN
Sbjct: 1  MSSSTRTLVVAATVGVVEALKDQGICRWNHLLRSTHHYARNHVRSISQAKKLSSTVPSAN 60

Query: 61 HLQQSEESLRTVMYLSCWGPNN 83
          HL++SEESLRTVMYLSCWGPNN
Sbjct: 61 HLRRSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of ClCG02G001340 vs. NCBI nr
Match: XP_008455358.1 (PREDICTED: uncharacterized protein LOC103495544 [Cucumis melo] >KAA0031604.1 Wound-responsive family protein [Cucumis melo var. makuwa] >TYK07056.1 Wound-responsive family protein [Cucumis melo var. makuwa])

HSP 1 Score: 153.7 bits (387), Expect = 7.0e-34
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTRAL+VAATVGVVEALKDQGICRWNH+LRSAHHYARNHV SISQAKK SSAV SAN
Sbjct: 1  MSSSTRALIVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSISQAKKFSSAVSSAN 60

Query: 61 HLQQSEESLRTVMYLSCWGPNN 83
           LQQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of ClCG02G001340 vs. NCBI nr
Match: XP_004136807.1 (uncharacterized protein LOC101222779 [Cucumis sativus] >KGN43577.1 hypothetical protein Csa_020183 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 3.5e-33
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTRAL VAATVGVVEALKDQGICRWNH+LRSAHHYARNHV S+SQAKK SSAV SAN
Sbjct: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60

Query: 61 HLQQSEESLRTVMYLSCWGPNN 83
           LQQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of ClCG02G001340 vs. NCBI nr
Match: XP_022952159.1 (uncharacterized protein LOC111454920 [Cucurbita moschata])

HSP 1 Score: 139.4 bits (350), Expect = 1.4e-29
Identity = 70/84 (83.33%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSA- 60
          MSSSTRAL+VAA+VGVVEALKDQGICRWNH +RSAHHYA+NHV SISQAKK S+AVP A 
Sbjct: 1  MSSSTRALIVAASVGVVEALKDQGICRWNHFIRSAHHYAKNHVGSISQAKKFSAAVPPAP 60

Query: 61 -NHLQQSEESLRTVMYLSCWGPNN 83
             L QSEESLRTVMYLSCWGPNN
Sbjct: 61 GKQLHQSEESLRTVMYLSCWGPNN 84

[Close]

BLAST of ClCG02G001340 vs. ExPASy TrEMBL
Match: A0A5D3C5F5 (Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003750 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 8.0e-36
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTRALVVAATVGVVEALKDQGICRWNH+LRSAHHYARNHVRSISQAKKLSSAVPSAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 HLQQSEESLRTVMYLSCWGPNN 83
            QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of ClCG02G001340 vs. ExPASy TrEMBL
Match: A0A0A0K6Y8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046640 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 8.0e-36
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTRALVVAATVGVVEALKDQGICRWNH+LRSAHHYARNHVRSISQAKKLSSAVPSAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 HLQQSEESLRTVMYLSCWGPNN 83
            QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of ClCG02G001340 vs. ExPASy TrEMBL
Match: A0A1S3C0A5 (uncharacterized protein LOC103495545 OS=Cucumis melo OX=3656 GN=LOC103495545 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 8.0e-36
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTRALVVAATVGVVEALKDQGICRWNH+LRSAHHYARNHVRSISQAKKLSSAVPSAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 HLQQSEESLRTVMYLSCWGPNN 83
            QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of ClCG02G001340 vs. ExPASy TrEMBL
Match: A0A5D3C9S0 (Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003740 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.4e-34
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTRAL+VAATVGVVEALKDQGICRWNH+LRSAHHYARNHV SISQAKK SSAV SAN
Sbjct: 1  MSSSTRALIVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSISQAKKFSSAVSSAN 60

Query: 61 HLQQSEESLRTVMYLSCWGPNN 83
           LQQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of ClCG02G001340 vs. ExPASy TrEMBL
Match: A0A1S3C1Y6 (uncharacterized protein LOC103495544 OS=Cucumis melo OX=3656 GN=LOC103495544 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.4e-34
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSAN 60
          MSSSTRAL+VAATVGVVEALKDQGICRWNH+LRSAHHYARNHV SISQAKK SSAV SAN
Sbjct: 1  MSSSTRALIVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSISQAKKFSSAVSSAN 60

Query: 61 HLQQSEESLRTVMYLSCWGPNN 83
           LQQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of ClCG02G001340 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 107.1 bits (266), Expect = 7.0e-24
Identity = 53/83 (63.86%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQ-GICRWNHVLRSAHHYARNHVRSISQAKKL-SSAVPS 60
          MSS+++  +VAA++G VEALKDQ G+CRWN+V+RSA+ Y RN++RS+SQAKKL SS++  
Sbjct: 1  MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query: 61 ANHLQQSEESLRTVMYLSCWGPN 82
           N  +Q+EESLRTVMYLSCWGP+
Sbjct: 61 TNKTKQAEESLRTVMYLSCWGPS 83

[Close]

BLAST of ClCG02G001340 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 97.1 bits (240), Expect = 7.2e-21
Identity = 50/90 (55.56%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 1  MSSSTRALVVAATVGVVEALKDQ-GICRWNHVLRSAHHYARNHVRSISQAKKLSSAVPSA 60
          MSS+++A  VA ++G VEALKDQ G+CRWN++LRS + + RN+VRS+SQ K+ SS+  SA
Sbjct: 1  MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query: 61 --------NHLQQSEESLRTVMYLSCWGPN 82
                     +++EESLRTVMYLSCWGPN
Sbjct: 61 AVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of ClCG02G001340 vs. TAIR 10
Match: AT4G33560.1 (Wound-responsive family protein )

HSP 1 Score: 47.0 bits (110), Expect = 8.6e-06
Identity = 29/80 (36.25%), Postives = 41/80 (51.25%), Query Frame = 0


Query: 10 VAATVGVVEALKDQGICRWNHVLRSAHHYARNHVRSISQAKKLS--SAVPSANHLQQS-- 69
          VA  +  VE LKDQG+ RWN++ R  H  A   VR+I+   + S  ++  SA  ++    
Sbjct: 11 VATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRSKPL 70

Query: 70 -----EESLRTVMYLSCWGP 81
               E S    M LSC+GP
Sbjct: 71 STTPFETSFEKAMGLSCFGP 90

The following BLAST results are available for this feature:

BLAST of ClCG02G001340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136808.1	1.7e-35	96.34	uncharacterized protein LOC101223015 [Cucumis sativus] >XP_008455359.1 PREDICTED...	[more]
XP_038888472.1	1.4e-34	92.68	uncharacterized protein LOC120078309 [Benincasa hispida]	[more]
XP_008455358.1	7.0e-34	92.68	PREDICTED: uncharacterized protein LOC103495544 [Cucumis melo] >KAA0031604.1 Wou...	[more]
XP_004136807.1	3.5e-33	91.46	uncharacterized protein LOC101222779 [Cucumis sativus] >KGN43577.1 hypothetical ...	[more]
XP_022952159.1	1.4e-29	83.33	uncharacterized protein LOC111454920 [Cucurbita moschata]	[more]

BLAST of ClCG02G001340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG02G001340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5F5	8.0e-36	96.34	Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0K6Y8	8.0e-36	96.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046640 PE=4 SV=1	[more]
A0A1S3C0A5	8.0e-36	96.34	uncharacterized protein LOC103495545 OS=Cucumis melo OX=3656 GN=LOC103495545 PE=...	[more]
A0A5D3C9S0	3.4e-34	92.68	Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3C1Y6	3.4e-34	92.68	uncharacterized protein LOC103495544 OS=Cucumis melo OX=3656 GN=LOC103495544 PE=...	[more]

BLAST of ClCG02G001340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10265.1	7.0e-24	63.86	Wound-responsive family protein	[more]
AT4G10270.1	7.2e-21	55.56	Wound-responsive family protein	[more]
AT4G33560.1	8.6e-06	36.25	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 10..80 e-value: 7.6E-32 score: 110.2
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 1..81
None	No IPR available	PANTHER	PTHR33090:SF56	WOUND-RESPONSIVE FAMILY PROTEIN	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G001340.1	ClCG02G001340.1	mRNA