Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAGTGAGAGAGCAGATAGGCAAAACTCTAAAGAGAAAGACGGCGGCAAAATGAAGTCCGGCGACCGGAGCTTGTATCCAGGGCCTTTCTTTAGTCCTCAAACTCCGGCGTCGAGGAGCGAACTCAGAAACAACTTCTTCAAAACACTTACCATCGGCATCGGTGGCAGCTCCTCCTCCTCCTCCACCAACAAGAACAGCTGA mRNA sequence ATGAGTGAGAGAGCAGATAGGCAAAACTCTAAAGAGAAAGACGGCGGCAAAATGAAGTCCGGCGACCGGAGCTTGTATCCAGGGCCTTTCTTTAGTCCTCAAACTCCGGCGTCGAGGAGCGAACTCAGAAACAACTTCTTCAAAACACTTACCATCGGCATCGGTGGCAGCTCCTCCTCCTCCTCCACCAACAAGAACAGCTGA Coding sequence (CDS) ATGAGTGAGAGAGCAGATAGGCAAAACTCTAAAGAGAAAGACGGCGGCAAAATGAAGTCCGGCGACCGGAGCTTGTATCCAGGGCCTTTCTTTAGTCCTCAAACTCCGGCGTCGAGGAGCGAACTCAGAAACAACTTCTTCAAAACACTTACCATCGGCATCGGTGGCAGCTCCTCCTCCTCCTCCACCAACAAGAACAGCTGA Protein sequence MSERADRQNSKEKDGGKMKSGDRSLYPGPFFSPQTPASRSELRNNFFKTLTIGIGGSSSSSSTNKNS
Homology
BLAST of ClCG02G000380 vs. NCBI nr
Match: KAE8651988.1 (hypothetical protein Csa_016955 [Cucumis sativus]) HSP 1 Score: 58.5 bits (140), Expect = 2.5e-05 Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 0
Query: 1 MSERADRQNSKEKDGGKMKSGDR-------SLYPGPFFSPQTPASRSELRNNFFKTLTIG 60
MSER+D+Q SK+KDG KMKSG + YPG +S Q PASRS L+N F T G
Sbjct: 6 MSERSDKQKSKDKDGEKMKSGAERKSKPCTTPYPGYSYSSQYPASRSALKNQFLSTGNFG 65
Query: 61 IGGSSSSSSTNK 66
I ++SSS+TNK
Sbjct: 66 I-AANSSSTTNK 76
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAE8651988.1 | 2.5e-05 | 52.78 | hypothetical protein Csa_016955 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..20 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..43 |
Relationships
The following mRNA feature(s) are a part of this gene:
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