ClCG01G025560 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G025560
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	glycine-rich RNA-binding protein 4, mitochondrial
Location	CG_Chr01: 38623124 .. 38629872 (-)
RNA-Seq Expression	ClCG01G025560
Synteny	ClCG01G025560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAACTGCATAATTGCGATAATTTTATAATAATTTTAGCTTTAATGCATATAAACTATAGACAACCATTTAAAATATATGAAATTACATTACTTAAATTGTGTGTAAACCAAAACAAACAACAATTATTTATGTATATTAATTTGTATAAATTATAATTAACGTAGGTACTTTATTTTTCCCAAATAATTTACATAGATGGTTTTAAAGGATGGCAAGTAATTCTATCTATTAATCTTGATTTAGAATCTTATAGCTTATAGGTTTAAAAATGTTATTTAATATGAAATAAATTGGTATGTTGATGATATTTTGAGGGACGGTGGTGAGAATGAGCTAGTTTGGTCCTAGAGAAGTAACCCTTATATTAGCCATTAGCTACCCTAAGATTTGGACAAATGAAATCATTTAATGATGAATTTGACCCAACCACGATCCTAACCCACTACCACTTGTTTTTCCTCTTGTCTGGATCTTTTTATTTAATGAGTATTACTTAACCATGATTTACATGTGTTGGTCTTTCTTTTTTGTCAGAAGTTCAAATCTTTATACTTTTTTTTTTTTCTTTTTTGACATATGTAGGGATGGGGAATTGAACTCTAACTTCGAGGTTGATAATCAAGCACAATGCTAGTTGAGCTAACCATAAACGTTGAGGAGTTTGTGGTATTTACTTTTGGTTAGAAATTCAAATCTCTATACTTTTTTTTTTTCTTTTTTTACATATGTGGGAGAGAGAGAATTGAATATTTGACTTCGAGTTGGTAATCAAATACTATGTCAGTTGAACTATGCTCATTTAGGCCATTCTCCATAAGATTATGTGTGTGAGGTTGGAAGATTTGAACTCAAAATATATCAGGACAACTCGATTTAGCAAAAAATGGAGTTCACCAACAAGATTATGTGTGTGAGATTGGAGGGAAAACAAAAAGATTGAGCACCTTTCTTCTTTTATAGTGGGCCTTGCTAGTTGCTGTTATTTACTTCAGTCTTTTATTTAGATTATATCCTTTATCTTTTATGATATCATTCATTGTTGTTAAATTATGTAATGTAATAAATGATGTGTAATATACTTCTCAATTTGTAAACCATAATTAAAGGCTAAAAAATAATGTTTTTGAACAAGACATTTTATATAATTTAACATTGAAATTTTGTGAACGAAAACTGTATAACGTATTTTTGAAGCATGAAAATAGAATAAAGTTTTGTATTATTGTTAGGAAGATATTTTATGTAACTTAACCTTTAAATTTTGTGAACGAAAATAGAATAACGTTTTTACATTATTGTTAGGAAGAAAGTTTGGATGAAAAATCAAAATTGTTAGGGGCTATGAAAATAAGAAACCGCGAATTTGGGGTTTTGAGGAACGAACGAACGAACGAAGCTCCACGGCGTCGACTGGGCAGATTTGAGCTCCAACATGTGGGCGGCCACCGTCTCCTTCCCTTCAATTTCAAATCTTCGGGGACCCATTCTTCTGAATAATCGATTGGACGGTTCAAAGCGCCTATCTCTGAATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGCAGACTCATGGTTAGAAGTAAATTCACTTGCCTCTTCCTTTCGTCTTGCTCTGCATTTTACCACCCCTTTTACTTGATTTCCTTGATTTCCCACTTCGAAATTTCCCCCCCAATTTAATGTGTTCGCTGTGATGTCAAATTTTCTGTTGCTCCTCTAGGTTGTTCCTGTTTCTTTCCTTTTGTCTTAGCTTGTTTGGTTGCTGTCTCGTTTCTTCTTGGGTTTGCCCTATTGTTATTTATGCTATTTTTGTGCCTTTGGTTTATTTTTCAATGCTTGTTTCTGCTGAAAGTTTATGCTGTTGTCTGCCTGACTACTCTAATCAGCGGTTTTTTTTATACCAATGAGGAAATTTATACAGCTAGCTAGGTTTGAAGGGTCAAAAGCGAACAATATGCGAGTTGTTTTAAGAAGGGAAGGTACCATGAAAGTTCTGCGTGGTTCATTATATATGACCGAGCGAGTTATCGATATTCAATGACATTGAATTGAAAATTTCCAAAGTTTATTAAGGATTGTTGAATGAGTTGTAAGAAAGAAATTGACCCCAAACGAAAGAGGGCGGGATGATAAATTATCCCCCTGCCCAAGAAAGGGGAAACTACAAGAAAGTCCTTCAATCTAAACTAATAAACCCATCGGCAGGTGAAATAGTCTATGAAATTGTAAACTCCAAGCAATGAGATAAGACCAGGACTTTGACCATGTGCCTGTCTAGAAAGAAAATCAACCGTATATAAACAGGTATAGTTATAGAAAAATCCTGGTGACAGTGTTCAAAGAAATTTTTAGTTGAATTGATTTAGTTTGAAACTCTTATATTCATGCTTCTGTGTGAAGGTGACCAGAGACACAAACTTGGTTGTCTTGCTGATGGAAGTTATAACCCCTTCAGATTCTTAGCATAGTCTATGACTCTATTTGGCCTACAGAACTTTTAGATAGATAAATTCAGAAGGATAATTTTCTTTCATGAAGGTTATATTACATGTCAATCTGGTCAAATTTGATTACCGAAAATGGGATTAAAAAGTAAAAGCATAATAATGTTGACACCTTAGATGTCCACTAGCATACAGATAATGATGTTTAACGCAAGTGATGTGGAGTGGATAGTAAAGCATTTATGGAATACTGGAACTCATGTATTGATAATTATGTGGACTTTTGAGTTTCGACACGGATCTTTTCTTCTTTTCATGGTAATACTTTTACTTTTAACTTTTAAGAATATGGCCAGAAAGGATTAATAATTTATTTCAAGTGAGAAAAAAAAAAGGTGTTTAGGTGGACTGTGGCTCTTGGTGTATATCTATGAAAATTTTCCAGCTATTCGCATTAGCCTTTTCTTGGAGTTTCCAGTCAACTTCCTTTCCTCTATTTTATTGGTATGTGTTGTCTTGCAATATATACGACTTTCACCTTCTATAATGTTATCAATTTTCTTTTTTTTTTTTTTTTTTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTTTTTTTTTTTTTTTTTTTTTTGGTTGTGGAAACAGAAACATTTCATTGATGAAAGAAATAGGTGATTACAAGAAATAGTGTAACGTAATACTAGTGAAAGTAAAAAGTCGACAGAAAACAATGACAATAGGAAAAGAACCTTTCCAAACCGTCTTTTGAAGTAAACTTATTGAAATTATTTTACTTATTATTGTTGGAAAGCAGACTTTCAATAATTTGTGAGAGAAGTTTTAGATGGCATTGTACACTTCTAATACACATGCCTTCTGGAAACAATTTTTTCCTCATGAGTTTTCTTCTGCTATTTTATTGTTCTCGTATTTTTCTTATAATTTGTGAGAGAAGTTTTAGATGGCATTGTACACTTCTAATACACATTCCTTCTGAAAACAATTTTTTCCTCATGAGTTTTCTTCTGCTATTTTATTGTTCTCGTATTTTTCTTGATGTTTTGTGAAGTCTTTTGGAATCTCATTATGTCGAGATTTTAAGAAGCCTTGTGTAGGAGGTTATTGCAATATCAAATCCTTGGAATTCATTTTCTTGAGCACCTATGAGCGTCCAAATGCTGCTTCCATTGAGTTGCTTTCTTAAAAAAATATATTTGCAGATTTACCATACTCCACCAATGAGAGTCGGCTGCAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGGTAATTGCATTTCTTGTTGCCTAATCTCCAGCCAAGTCCAATAAGCCTTTTAATCTTGTTGCTTCACTTATCAACCCATGGCAGTGTTAGTAGCTAAAGACCGATTAACAAAAAGACCCAAAGGTTATGCGTTTATTCAATACACTTGCCAAGACGATGCAATGCTTGCTCTGGAAAATATGGATTGCAAGGTTAAACTTCACCTAGTTCTGTATTTTCTAGATAAGGTAACTCATGCTTGAAAGTTAATGTAGTTTCTGTGTCTCTCAAAACCAGAAATTTGATGGAAGGATGATCTATGTGGAACTCGCAAAACCTGGTAGTGATTCCTTTGGAGGATATCCAAGAACCTCCGGACCCCCAGAAGAGCGGCCTAAAGTGGAGCTAGAAGAGGTGGAAGATTGTTGGTATTGATCTTCTTCTTACTAAGATACACAATATATAGGACACCGATGGCTTTAACAGTTAATGATAGTTGTGCCCAATGAGATTCAGATCAATCCCAAAGAATCTGTGAGTGCTGAAGTGTTTTCTAAGATGGATTAATTACATTTATTTTCATAGTTTCAAGCTTTAGATGCTGATGCCATTCTGCAACTCTTCTCCTGTATTTTGTTACTGGAACAGATATCTATTTGTAAGTACACTGTTTATGACACTTAATGCATCTTCTAGTGCATATTGCTTTATGTAGCTTTGCAATTGAGATTATGGAAAATGCGGAAATTCGTAATGCAAATACCTTTACAATGTCTTTTTTTTTTTCTTTCTTTCTCTTTCCTGATCCAATAACCTGTGTCCAAATTTAAAGTGTATTGTGGTTTTTCAATCGGTTCTTATTTCTTGACTTGCACTCAACTTTTGGTATGATAATGCAAGAAGCGGCCCAGGGACACCTACACAGAGATTGCGTATTTGAATTTTTAAGCGAGCTTAATAAGAAAAATCTTTGATATCTCTAAAGTGCAGGTGTTGGGCATGTGTGTGTATATATATATAACTTTTACAATCAAAGAACCAATGAGTTTCATTTCTTGCATTATACTCATGATCTACTTTAGCTTTCAGATTTTTGGTAGAAGTCAAGGCTTAAATTAACGTAGGTGATCAATTTCTCCTATATATCTTCCACTTCTAGACAGGGGTCACAGTTCAACCACACATAGTGCTTTGTTCTATCTTCTCAAAAAGGAGACAATTTTAAAGTAGCTTTTATTTAACTTTTGAAGCTTGAATACATTACTTTTGGTCCAGCGGCTGTTGTTTGTCCTTCAATACTATTTAACTTTTGATGCTTGATCAATGGATAGTTCTATACAGTTAGCCATTTCTTCGACTCAAAAGAAGATAACAAAAGAATAGGCAACACCAAAATCTAGTTTTATTGCTTACTGACTGCAACTAATTTCATCTATCAATCTCAACTCTTGGAAATTGGTAGCATCTTCTAAAGAAGTCAATCCATGTGATCGTTTTTATTGCTTACCTGATTCACTTTTAAGTCTACTGCTTCTTGATCTGTGCAATTTTACTTGACATTACACAATATGTTCTATAGAATCCTTGGACTTGAGCCGATGCCTGCAAGTGGGGCAAGAAGAGTGAGACAGCAGCCATTTATCAATGCAAGTGACATGGTACCTGTGAGCACAGTTTGGCAACACCCGTATTTTATCCCCATTTGAGAAATCGACGAGGCAGATAGCACAGGCTGAAGTTGATGAAGGCGACGTCGGTGAGCCAGAATTCGTGTAAGTTGAAGTCGGCAGGGCAACCATGTCTTGCTTCTTCATGCCTGAGTTCAGTCCCCTTAAAGCCACCCAGTGGACTGTTTGTCTAAGGGTGTGATTGGCGCATTGAAGTATACATATCAGCATGGTATTTAGACCAAGTGTGCAAACAACGGCGCAAACGACTGCAACCACTATGACAATGAGGTTGAAATTGCCACCTTGTTCTTGCTCGCGAGCATCTGGGATAGATACACTTGGTGATGGATTAAGGGAAGGAGAGGAGGAAGGTTCCATGAACGAAGAACGGAGCATTTTTGGCGAGCTGAAGCGGCTGAGAAGAAAGCAAGATAAACACACATGTGAAACAAGTTGAGGTGAAGAAACATAAGATCTGGAGGAGGGCATATGATCAAATTAGATATTTGTGGACAGAGAGCTAGGTGGGTTCAATTCAACATGGAGGGTGAGAATGTGATGGGAAGTAGTGGGGTTATTTGAAAAATGAATCAACCTCTTTTTTTCTTTTGTTTGTGCGCTACAAACAGAAAAGTCAGTCTCATTGTCCCCTCACTTTCTTTCATCCTTAGCACCAAAGAAAATCAATCAATTTCCCCATGTGGCTATTTTCACTCGGGACAACAGAACCTGATATAGAGTTATAACACATTTCAAGACCAGCTTTCATGTATTTTTGTACTCTAAGAAGTAAGTAGAGTGAGATCAAATTATGCAAACTCAAAGTGAAACTTCTCACATCAACGCTACGACTAGCATTTGAAGTTGTAAGCAAGAGACGGGTTATCAGTTCAAAGACGTCTGCAAAGGGGAGTGCAATGTATATCATTTTTGGGTTCATTGGTGAGGGCAAAGGCATATGAATGGGTACAAAGTTCAATCTCCAAATTATGTGGTTCTAGTTTACTCAACTACTGACCTCTTCATCGTTATTGACTATAAAAGGATTGTATTCACTTCATCACTATTTTAATCCATTCTTTATTCTGTATGCATACCAAAACTATTCCTTTCAACTGCTGTGTATGATGATTGTCTACAAATCTAAGATAAATTTGATAACTTG

mRNA sequence

CTAAACTGCATAATTGCGATAATTTTATAATAATTTTAGCTTTAATGCATATAAACTATAGACAACCATTTAAAATATATGAAATTACATTACTTAAATTGTGTGTAAACCAAAACAAACAACAATTATTTATGTATATTAATTTGTATAAATTATAATTAACGTAGGTACTTTATTTTTCCCAAATAATTTACATAGATGGTTTTAAAGGATGGCAAGTAATTCTATCTATTAATCTTGATTTAGAATCTTATAGCTTATAGGTTTAAAAATGTTATTTAATATGAAATAAATTGGTATGTTGATGATATTTTGAGGGACGGTGGTGAGAATGAGCTAGTTTGGTCCTAGAGAAGTAACCCTTATATTAGCCATTAGCTACCCTAAGATTTGGACAAATGAAATCATTTAATGATGAATTTGACCCAACCACGATCCTAACCCACTACCACTTGTTTTTCCTCTTGTCTGGATCTTTTTATTTAATGAGTATTACTTAACCATGATTTACATGTGTTGGTCTTTCTTTTTTGTCAGAAGTTCAAATCTTTATACTTTTTTTTTTTTCTTTTTTGACATATGTAGGGATGGGGAATTGAACTCTAACTTCGAGGTTGATAATCAAGCACAATGCTAGTTGAGCTAACCATAAACGTTGAGGAGTTTGTGGTATTTACTTTTGGTTAGAAATTCAAATCTCTATACTTTTTTTTTTTCTTTTTTTACATATGTGGGAGAGAGAGAATTGAATATTTGACTTCGAGTTGGTAATCAAATACTATGTCAGTTGAACTATGCTCATTTAGGCCATTCTCCATAAGATTATGTGTGTGAGGTTGGAAGATTTGAACTCAAAATATATCAGGACAACTCGATTTAGCAAAAAATGGAGTTCACCAACAAGATTATGTGTGTGAGATTGGAGGGAAAACAAAAAGATTGAGCACCTTTCTTCTTTTATAGTGGGCCTTGCTAGTTGCTGTTATTTACTTCAGTCTTTTATTTAGATTATATCCTTTATCTTTTATGATATCATTCATTGTTGTTAAATTATGTAATGTAATAAATGATGTGTAATATACTTCTCAATTTGTAAACCATAATTAAAGGCTAAAAAATAATGTTTTTGAACAAGACATTTTATATAATTTAACATTGAAATTTTGTGAACGAAAACTGTATAACGTATTTTTGAAGCATGAAAATAGAATAAAGTTTTGTATTATTGTTAGGAAGATATTTTATGTAACTTAACCTTTAAATTTTGTGAACGAAAATAGAATAACGTTTTTACATTATTGTTAGGAAGAAAGTTTGGATGAAAAATCAAAATTGTTAGGGGCTATGAAAATAAGAAACCGCGAATTTGGGGTTTTGAGGAACGAACGAACGAACGAAGCTCCACGGCGTCGACTGGGCAGATTTGAGCTCCAACATGTGGGCGGCCACCGTCTCCTTCCCTTCAATTTCAAATCTTCGGGGACCCATTCTTCTGAATAATCGATTGGACGGTTCAAAGCGCCTATCTCTGAATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGCAGACTCATGTCTTTTGGAATCTCATTATGTCGAGATTTTAAGAAGCCTTGTGTAGGAGATTTACCATACTCCACCAATGAGAGTCGGCTGCAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGTGTTAGTAGCTAAAGACCGATTAACAAAAAGACCCAAAGGTTATGCGTTTATTCAATACACTTGCCAAGACGATGCAATGCTTGCTCTGGAAAATATGGATTGCAAGAAATTTGATGGAAGGATGATCTATGTGGAACTCGCAAAACCTGGTAGTGATTCCTTTGGAGGATATCCAAGAACCTCCGGACCCCCAGAAGAGCGGCCTAAAGTGGAGCTAGAAGAGGTGGAAGATTGTTGGTATTGATCTTCTTCTTACTAAGATACACAATATATAGGACACCGATGGCTTTAACAGTTAATGATAGTTGTGCCCAATGAGATTCAGATCAATCCCAAAGAATCTGTGAGTGCTGAAGTGTTTTCTAAGATGGATTAATTACATTTATTTTCATAGTTTCAAGCTTTAGATGCTGATGCCATTCTGCAACTCTTCTCCTGTATTTTGTTACTGGAACAGATATCTATTTAATCCTTGGACTTGAGCCGATGCCTGCAAGTGGGGCAAGAAGAGTGAGACAGCAGCCATTTATCAATGCAAGTGACATGGTACCTGTGAGCACAGTTTGGCAACACCCGTATTTTATCCCCATTTGAGAAATCGACGAGGCAGATAGCACAGGCTGAAGTTGATGAAGGCGACGTCGGTGAGCCAGAATTCGTGTAAGTTGAAGTCGGCAGGGCAACCATGTCTTGCTTCTTCATGCCTGAGTTCAGTCCCCTTAAAGCCACCCAGTGGACTGTTTGTCTAAGGGTGTGATTGGCGCATTGAAGTATACATATCAGCATGGTATTTAGACCAAGTGTGCAAACAACGGCGCAAACGACTGCAACCACTATGACAATGAGGTTGAAATTGCCACCTTGTTCTTGCTCGCGAGCATCTGGGATAGATACACTTGGTGATGGATTAAGGGAAGGAGAGGAGGAAGGTTCCATGAACGAAGAACGGAGCATTTTTGGCGAGCTGAAGCGGCTGAGAAGAAAGCAAGATAAACACACATGTGAAACAAGTTGAGGTGAAGAAACATAAGATCTGGAGGAGGGCATATGATCAAATTAGATATTTGTGGACAGAGAGCTAGGTGGGTTCAATTCAACATGGAGGGTGAGAATGTGATGGGAAGTAGTGGGGTTATTTGAAAAATGAATCAACCTCTTTTTTTCTTTTGTTTGTGCGCTACAAACAGAAAAGTCAGTCTCATTGTCCCCTCACTTTCTTTCATCCTTAGCACCAAAGAAAATCAATCAATTTCCCCATGTGGCTATTTTCACTCGGGACAACAGAACCTGATATAGAGTTATAACACATTTCAAGACCAGCTTTCATGTATTTTTGTACTCTAAGAAGTAAGTAGAGTGAGATCAAATTATGCAAACTCAAAGTGAAACTTCTCACATCAACGCTACGACTAGCATTTGAAGTTGTAAGCAAGAGACGGGTTATCAGTTCAAAGACGTCTGCAAAGGGGAGTGCAATGTATATCATTTTTGGGTTCATTGGTGAGGGCAAAGGCATATGAATGGGTACAAAGTTCAATCTCCAAATTATGTGGTTCTAGTTTACTCAACTACTGACCTCTTCATCGTTATTGACTATAAAAGGATTGTATTCACTTCATCACTATTTTAATCCATTCTTTATTCTGTATGCATACCAAAACTATTCCTTTCAACTGCTGTGTATGATGATTGTCTACAAATCTAAGATAAATTTGATAACTTG

Coding sequence (CDS)

ATGTGGGCGGCCACCGTCTCCTTCCCTTCAATTTCAAATCTTCGGGGACCCATTCTTCTGAATAATCGATTGGACGGTTCAAAGCGCCTATCTCTGAATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGCAGACTCATGTCTTTTGGAATCTCATTATGTCGAGATTTTAAGAAGCCTTGTGTAGGAGATTTACCATACTCCACCAATGAGAGTCGGCTGCAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGTGTTAGTAGCTAAAGACCGATTAACAAAAAGACCCAAAGGTTATGCGTTTATTCAATACACTTGCCAAGACGATGCAATGCTTGCTCTGGAAAATATGGATTGCAAGAAATTTGATGGAAGGATGATCTATGTGGAACTCGCAAAACCTGGTAGTGATTCCTTTGGAGGATATCCAAGAACCTCCGGACCCCCAGAAGAGCGGCCTAAAGTGGAGCTAGAAGAGGTGGAAGATTGTTGGTATTGA

Protein sequence

MWAATVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLMSFGISLCRDFKKPCVGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVELAKPGSDSFGGYPRTSGPPEERPKVELEEVEDCWY

Homology

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BLAST of ClCG01G025560 vs. NCBI nr
Match: XP_038883016.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa hispida])

HSP 1 Score: 279.3 bits (713), Expect = 2.3e-71
Identity = 142/181 (78.45%), Postives = 149/181 (82.32%), Query Frame = 0


Query: 1   MWAATVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLM------------ 60
           MWAATVSFPSISNLRGPIL NNR DGSKR SLN RASF DYPLASRL+            
Sbjct: 1   MWAATVSFPSISNLRGPILPNNRTDGSKRPSLNFRASFSDYPLASRLLVRTSLNFEGSNL 60

Query: 61  -SFGISLCRDFKKPCVGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQY 120
            S  + L R+       DLPYST ESRLQEEFSNFGEIAEVL+AKD+LTKRPKGYAFIQY
Sbjct: 61  NSMRVVLRRE-------DLPYSTKESRLQEEFSNFGEIAEVLLAKDQLTKRPKGYAFIQY 120

Query: 121 TCQDDAMLALENMDCKKFDGRMIYVELAKPGSDSFGGYPRTSGPPEERPKVELEEVEDCW 169
           TCQDDAMLALENMDCKKFDGRMIYVELAKPGS SFGGYPRTSGPP+ERPKVEL+EV DCW
Sbjct: 121 TCQDDAMLALENMDCKKFDGRMIYVELAKPGSSSFGGYPRTSGPPKERPKVELQEVADCW 174

[Close]

BLAST of ClCG01G025560 vs. NCBI nr
Match: XP_038883015.1 (glycine-rich RNA-binding protein GRP2A isoform X2 [Benincasa hispida])

HSP 1 Score: 278.9 bits (712), Expect = 2.9e-71
Identity = 144/190 (75.79%), Postives = 151/190 (79.47%), Query Frame = 0


Query: 1   MWAATVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRL----------MSF 60
           MWAATVSFPSISNLRGPIL NNR DGSKR SLN RASF DYPLASRL          +SF
Sbjct: 1   MWAATVSFPSISNLRGPILPNNRTDGSKRPSLNFRASFSDYPLASRLLVRSKFTFLFLSF 60

Query: 61  GISLCRDFKKP--CVG----------DLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKR 120
            +    +   P  CV           DLPYST ESRLQEEFSNFGEIAEVL+AKD+LTKR
Sbjct: 61  QLIFHLEISPPICCVHCDVNFSVAPLDLPYSTKESRLQEEFSNFGEIAEVLLAKDQLTKR 120

Query: 121 PKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVELAKPGSDSFGGYPRTSGPPEERPKV 169
           PKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVELAKPGS SFGGYPRTSGPP+ERPKV
Sbjct: 121 PKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVELAKPGSSSFGGYPRTSGPPKERPKV 180

[Close]

BLAST of ClCG01G025560 vs. NCBI nr
Match: XP_038883014.1 (UBP1-associated proteins 1B isoform X1 [Benincasa hispida])

HSP 1 Score: 271.2 bits (692), Expect = 6.1e-69
Identity = 144/210 (68.57%), Postives = 151/210 (71.90%), Query Frame = 0


Query: 1   MWAATVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRL----------MSF 60
           MWAATVSFPSISNLRGPIL NNR DGSKR SLN RASF DYPLASRL          +SF
Sbjct: 1   MWAATVSFPSISNLRGPILPNNRTDGSKRPSLNFRASFSDYPLASRLLVRSKFTFLFLSF 60

Query: 61  GISLCRDFKKP--CV------------------------------GDLPYSTNESRLQEE 120
            +    +   P  CV                               DLPYST ESRLQEE
Sbjct: 61  QLIFHLEISPPICCVHCDVNFSVAPLASLNFEGSNLNSMRVVLRREDLPYSTKESRLQEE 120

Query: 121 FSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVELAKPG 169
           FSNFGEIAEVL+AKD+LTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVELAKPG
Sbjct: 121 FSNFGEIAEVLLAKDQLTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVELAKPG 180

[Close]

BLAST of ClCG01G025560 vs. NCBI nr
Match: XP_022977992.1 (small RNA-binding protein 11, chloroplastic [Cucurbita maxima])

HSP 1 Score: 262.7 bits (670), Expect = 2.2e-66
Identity = 135/170 (79.41%), Postives = 141/170 (82.94%), Query Frame = 0


Query: 1   MWAATVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLMSFGISLCRDFKK 60
           MWAATVSFPS+SNLRGPI LNNRLD SKR SLNLRASF DYPLASRLM            
Sbjct: 1   MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLM------------ 60

Query: 61  PCVGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENM 120
             V +LPYSTNE+RLQEEFSNFGEIAEVL+AKDRLTK PKGYAFIQYT QDDAMLALENM
Sbjct: 61  --VRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENM 120

Query: 121 DCKKFDGRMIYVELAKPGSDSFGGYPRTSGPPEER--PKVELEEVEDCWY 169
           DCKKFDGR IYVELAKPGS SFGGYP TSGPP+ER  PK+  EEV DCWY
Sbjct: 121 DCKKFDGRTIYVELAKPGSGSFGGYPVTSGPPKERPIPKLVPEEVADCWY 156

[Close]

BLAST of ClCG01G025560 vs. NCBI nr
Match: XP_008439484.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 262.3 bits (669), Expect = 2.8e-66
Identity = 130/168 (77.38%), Postives = 137/168 (81.55%), Query Frame = 0


Query: 1   MWAATVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLMSFGISLCRDFKK 60
           MWA TVS PSISNLRGP+  NN L  S R SLNLRASFFDYPLASRLM            
Sbjct: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLM------------ 60

Query: 61  PCVGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENM 120
             V +LPYSTNESRLQEEFSNFGEIAEVL+AKDR TKRPKGYAFIQYTCQDDAMLALENM
Sbjct: 61  --VRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENM 120

Query: 121 DCKKFDGRMIYVELAKPGSDSFGGYPRTSGPPEERPKVELEEVEDCWY 169
           DCK FDGR IYVE+AKPGS SFGGYPRTSGPP+ERP VE E++ DCWY
Sbjct: 121 DCKIFDGRTIYVEIAKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY 154

[Close]

BLAST of ClCG01G025560 vs. ExPASy Swiss-Prot
Match: Q9DED4 (Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-13
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 57  DFKKPCVGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLA 116
           D  K  +G L + TNE  L++ FS +G+I+EV+V KDR TKR +G+ F+ +   DDA  A
Sbjct: 3   DEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDA 62

Query: 117 LENMDCKKFDGRMIYVELA-KPGSDSFGGY 146
           +  M+ K  DGR I V+ A K   D  GGY
Sbjct: 63  MMAMNGKAVDGRQIRVDQAGKSSGDRRGGY 92

[Close]

BLAST of ClCG01G025560 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-13
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 63  VGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDC 122
           V  L + T E  L++ F  FG +  + +  D++  RPKG+AF++Y  +++AM A++ M  
Sbjct: 81  VSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHG 140

Query: 123 KKFDGRMIYVELAKPGSDSFGGYPRTSGP-PEERPK 158
           K  DGR+I+VE AK  SD     PR   P P+ +P+
Sbjct: 141 KFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKPR 176

[Close]

BLAST of ClCG01G025560 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.5e-13
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 63  VGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDC 122
           VG L + T++S L++ F++FGE+ E  V  DR T R +G+ F+ ++C+D A  A++ MD 
Sbjct: 39  VGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDG 98

Query: 123 KKFDGRMIYVELAKPGS----DSFGG 145
           K+ +GR I V LA   S     SFGG
Sbjct: 99  KELNGRQIRVNLATERSSAPRSSFGG 124

[Close]

BLAST of ClCG01G025560 vs. ExPASy Swiss-Prot
Match: P60826 (Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-12
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 54  LCRDFKKPCVGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDA 113
           +  D  K  VG L + TNE  L++ FS +G+I+EV+V KDR T+R +G+ F+ +   DDA
Sbjct: 1   MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query: 114 MLALENMDCKKFDGRMIYVELAKPGSDS 142
             A+  M+ K  DGR I V+ A   SD+
Sbjct: 61  KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88

[Close]

BLAST of ClCG01G025560 vs. ExPASy Swiss-Prot
Match: Q14011 (Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-12
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 54  LCRDFKKPCVGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDA 113
           +  D  K  VG L + TNE  L++ FS +G+I+EV+V KDR T+R +G+ F+ +   DDA
Sbjct: 1   MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60

Query: 114 MLALENMDCKKFDGRMIYVELAKPGSDS 142
             A+  M+ K  DGR I V+ A   SD+
Sbjct: 61  KDAMMAMNGKSVDGRQIRVDQAGKSSDN 88

[Close]

BLAST of ClCG01G025560 vs. ExPASy TrEMBL
Match: A0A6J1IJY1 (small RNA-binding protein 11, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111478117 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.1e-66
Identity = 135/170 (79.41%), Postives = 141/170 (82.94%), Query Frame = 0


Query: 1   MWAATVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLMSFGISLCRDFKK 60
           MWAATVSFPS+SNLRGPI LNNRLD SKR SLNLRASF DYPLASRLM            
Sbjct: 1   MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLM------------ 60

Query: 61  PCVGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENM 120
             V +LPYSTNE+RLQEEFSNFGEIAEVL+AKDRLTK PKGYAFIQYT QDDAMLALENM
Sbjct: 61  --VRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENM 120

Query: 121 DCKKFDGRMIYVELAKPGSDSFGGYPRTSGPPEER--PKVELEEVEDCWY 169
           DCKKFDGR IYVELAKPGS SFGGYP TSGPP+ER  PK+  EEV DCWY
Sbjct: 121 DCKKFDGRTIYVELAKPGSGSFGGYPVTSGPPKERPIPKLVPEEVADCWY 156

[Close]

BLAST of ClCG01G025560 vs. ExPASy TrEMBL
Match: A0A1S3AYG0 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484270 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.4e-66
Identity = 130/168 (77.38%), Postives = 137/168 (81.55%), Query Frame = 0


Query: 1   MWAATVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLMSFGISLCRDFKK 60
           MWA TVS PSISNLRGP+  NN L  S R SLNLRASFFDYPLASRLM            
Sbjct: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLM------------ 60

Query: 61  PCVGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENM 120
             V +LPYSTNESRLQEEFSNFGEIAEVL+AKDR TKRPKGYAFIQYTCQDDAMLALENM
Sbjct: 61  --VRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENM 120

Query: 121 DCKKFDGRMIYVELAKPGSDSFGGYPRTSGPPEERPKVELEEVEDCWY 169
           DCK FDGR IYVE+AKPGS SFGGYPRTSGPP+ERP VE E++ DCWY
Sbjct: 121 DCKIFDGRTIYVEIAKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY 154

[Close]

BLAST of ClCG01G025560 vs. ExPASy TrEMBL
Match: A0A0A0KL21 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526430 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.0e-65
Identity = 130/172 (75.58%), Postives = 138/172 (80.23%), Query Frame = 0


Query: 1   MWAATVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLMSFGISLCRDFKK 60
           MWA TVSFPS+SNLRGPI  NNRL  S R+SLNLRASFFDYPLASRLM            
Sbjct: 1   MWATTVSFPSVSNLRGPIFPNNRLVASNRISLNLRASFFDYPLASRLM------------ 60

Query: 61  PCVGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENM 120
             V +LPYSTNESRLQEEFSNFGEIAEVL+AKDR TKRPKGYAFIQYTCQDDAMLALE M
Sbjct: 61  --VRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETM 120

Query: 121 DCKKFDGRMIYVELAKPGSDSFGGYPRTSGPPEERP----KVELEEVEDCWY 169
           DCK FDGRMIYVE+A PGS SFGGYPR SGPP+ERP     V+ E+V DCWY
Sbjct: 121 DCKIFDGRMIYVEIATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 158

[Close]

BLAST of ClCG01G025560 vs. ExPASy TrEMBL
Match: A0A6J1EGU7 (small RNA-binding protein 11, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433254 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.4e-65
Identity = 133/170 (78.24%), Postives = 140/170 (82.35%), Query Frame = 0


Query: 1   MWAATVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLMSFGISLCRDFKK 60
           MWAATVSFPS+SNLRGPI L+NRLD SKR SLNLRASF DYPLASRLM            
Sbjct: 1   MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLM------------ 60

Query: 61  PCVGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENM 120
             V +LPYSTNE+RLQEEFSNFGEIAEVL+AKDRLTK PKGYAFIQYT QDDAMLALENM
Sbjct: 61  --VRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENM 120

Query: 121 DCKKFDGRMIYVELAKPGSDSFGGYPRTSGPPEER--PKVELEEVEDCWY 169
           DCKKFDGR IYVELAKPGS SF GYP TSGPP+ER  PK+  EEV DCWY
Sbjct: 121 DCKKFDGRTIYVELAKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY 156

[Close]

BLAST of ClCG01G025560 vs. ExPASy TrEMBL
Match: A0A6J1CXC0 (glycine-rich RNA-binding protein 4, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111015686 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.9e-64
Identity = 124/168 (73.81%), Postives = 140/168 (83.33%), Query Frame = 0


Query: 1   MWAATVSFPSISNLRGPILLNNRLDGSKRLSLNLRASFFDYPLASRLMSFGISLCRDFKK 60
           MWA+TVSFP + N R PILL+N   G+ R SLNLRASFFDYPLASR+M            
Sbjct: 1   MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVM------------ 60

Query: 61  PCVGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENM 120
             V +LPYST+E RLQEEFS+FGE+AEVL+AKDR+TKRP+GYAFIQYTCQDDAMLALENM
Sbjct: 61  --VRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENM 120

Query: 121 DCKKFDGRMIYVELAKPGSDSFGGYPRTSGPPEERPKVELEEVEDCWY 169
           D KKFDGR IYVE+A+PGSDSFGGYPRTSGPP+ERPK+ELEEV DCWY
Sbjct: 121 DGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPKLELEEVADCWY 154

[Close]

BLAST of ClCG01G025560 vs. TAIR 10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 155.6 bits (392), Expect = 3.5e-38
Identity = 83/172 (48.26%), Postives = 110/172 (63.95%), Query Frame = 0


Query: 1   MWAATVSFPSISNLRGPILLNNRLDGSKRLSL-NLRASFFDYPLASRLMSFGISLCRDFK 60
           MW+AT+SFPS       +  ++ L   + L    ++AS F+YPLAS++M           
Sbjct: 1   MWSATLSFPSF------VASSSSLPNYRNLRFPKIKASLFNYPLASKIM----------- 60

Query: 61  KPCVGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALEN 120
              V +LP+ST+E  L+ EFS FGEIAEV + KD   KR KGYAFIQ+T QDDA LA+E 
Sbjct: 61  ---VRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 120

Query: 121 MDCKKFDGRMIYVELAKPGSDSFGGYPRTSGPPEERPKVE---LEEVEDCWY 169
           MD + ++GRMIY+++AKPG   F G PRTSGPPE+  + E    +EV DCWY
Sbjct: 121 MDRRMYNGRMIYIDIAKPGKRDFQGLPRTSGPPEKSDEPEEAANDEVADCWY 152

[Close]

BLAST of ClCG01G025560 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-14
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 63  VGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDC 122
           V  L + T E  L++ F  FG +  + +  D++  RPKG+AF++Y  +++AM A++ M  
Sbjct: 81  VSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHG 140

Query: 123 KKFDGRMIYVELAKPGSDSFGGYPRTSGP-PEERPK 158
           K  DGR+I+VE AK  SD     PR   P P+ +P+
Sbjct: 141 KFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKPR 176

[Close]

BLAST of ClCG01G025560 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 75.1 bits (183), Expect = 6.0e-14
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 63  VGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDC 122
           VG L + T++S L++ F++FGE+ E  V  DR T R +G+ F+ ++C+D A  A++ MD 
Sbjct: 39  VGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDG 98

Query: 123 KKFDGRMIYVELAKPGS----DSFGG 145
           K+ +GR I V LA   S     SFGG
Sbjct: 99  KELNGRQIRVNLATERSSAPRSSFGG 124

[Close]

BLAST of ClCG01G025560 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 75.1 bits (183), Expect = 6.0e-14
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 63  VGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDC 122
           VG L + T++S L++ F++FGE+ E  V  DR T R +G+ F+ ++C+D A  A++ MD 
Sbjct: 39  VGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDG 98

Query: 123 KKFDGRMIYVELAKPGS----DSFGG 145
           K+ +GR I V LA   S     SFGG
Sbjct: 99  KELNGRQIRVNLATERSSAPRSSFGG 124

[Close]

BLAST of ClCG01G025560 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 71.2 bits (173), Expect = 8.7e-13
Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 63  VGDLPYSTNESRLQEEFSNFGEIAEVLVAKDRLTKRPKGYAFIQYTCQDDAMLALENMDC 122
           +G L + T E  L E FS  G++ E  +  DR++ R KG+ F+ +   D+A  AL   + 
Sbjct: 38  IGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNG 97

Query: 123 KKFDGRMIYVELAKPGSD--SFGGYPRTSGPPE 154
           ++ +GR I+V+ AK        GGYP   GPP+
Sbjct: 98  QQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPD 130

The following BLAST results are available for this feature:

BLAST of ClCG01G025560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883016.1	2.3e-71	78.45	organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa h...	[more]
XP_038883015.1	2.9e-71	75.79	glycine-rich RNA-binding protein GRP2A isoform X2 [Benincasa hispida]	[more]
XP_038883014.1	6.1e-69	68.57	UBP1-associated proteins 1B isoform X1 [Benincasa hispida]	[more]
XP_022977992.1	2.2e-66	79.41	small RNA-binding protein 11, chloroplastic [Cucurbita maxima]	[more]
XP_008439484.1	2.8e-66	77.38	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]

BLAST of ClCG01G025560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9DED4	2.9e-13	44.44	Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 S...	[more]
Q9FX45	2.9e-13	37.50	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9LIS2	8.5e-13	41.86	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
P60826	1.9e-12	42.05	Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 ...	[more]
Q14011	1.9e-12	42.05	Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1	[more]

BLAST of ClCG01G025560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IJY1	1.1e-66	79.41	small RNA-binding protein 11, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A1S3AYG0	1.4e-66	77.38	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0KL21	2.0e-65	75.58	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526430 PE=4 SV...	[more]
A0A6J1EGU7	3.4e-65	78.24	small RNA-binding protein 11, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1CXC0	4.9e-64	73.81	glycine-rich RNA-binding protein 4, mitochondrial OS=Momordica charantia OX=3673...	[more]

BLAST of ClCG01G025560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20030.1	3.5e-38	48.26	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	2.1e-14	37.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	6.0e-14	41.86	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	6.0e-14	41.86	glycine-rich RNA-binding protein 4	[more]
AT5G06210.1	8.7e-13	35.48	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 60..133 e-value: 1.2E-21 score: 87.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 63..130 e-value: 3.4E-17 score: 62.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 59..137 score: 17.25057
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 56..158 e-value: 2.3E-24 score: 88.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..161
None	No IPR available	PANTHER	PTHR13952:SF19	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1	coord: 62..165
None	No IPR available	PANTHER	PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	coord: 62..165
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 62..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G025560.2	ClCG01G025560.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding