ClCG01G022740 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G022740
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr01: 36246085 .. 36248225 (-)
RNA-Seq Expression	ClCG01G022740
Synteny	ClCG01G022740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGGCCTTTTCTCCTTGGAGTCATGTTGGAATGCTCACATTCCATCAACTACAGCGATAAAGACAGAGAACGAGAAGGAGAGGAGAGAGAGAAAGAGATGGAGAGAGAGGGGGAGAGCTAATAACAATTGCAGTGGGCAGAGAGCCTACAGAGACATATCAGTATCGAATATTGTTGCGGCAAAAGTACCGAAGGAAGGTGACTATGTTCAACGGTATGTCTTCTGTCTTTGCCTCTTTCACGGGCTTAAAAATATTTATGTTCCACTAAACTCCTTAACAATTCTCTACGGTTCCTAAATAGATTCATTCTTTTAAAAAAGCGAGGAATAAATTTCCTTTTGAACATTCTTAAAAAATAAAGTACAATTTTTTACAGGAAAGGATTATAAAAATTCAAACCCTTTCTCCGTTATGAATTTAACAGAAAAATGCTGCTGCAGGACTCCTGTGGGGTATTAGTCCAAAACCCCACTTAACAGAAACTGAGCCTTGTGGTTCAGAATAAAAGAAAGTCAACAGGTCAAAACACTTCTTTAGTTTTTTTATTTTGAATTTTGGCTTGTGTGCAGTGCACTGTTTCAAGGAAAAAAGAAATACACACCTACGATGAAATAGTGAGTACTGTTTAATGTTGACAATAAAATGATTTAGGGTAGGAATTAGAGATACAAGGATTAAAGCATTGTTTAAAATTCTAGGAATTAGAGGTGTGTTTTACTTCGAACCAAAAATTAGTATAGAATGCTGTCTATGGGAACAGATAGTTGTATTGATCAATCAAATCAGTGTTTGGCCATCTTATCCACTGATTTGTCTCCTATACCAGGCAAAATGGAGAAACTCGATTCATCTTGGTAACTTTATAGGATTTCTAGGTCTTATTGCTCTCACACGCTCTTTTCCATTGCCCTTTTACTTTTCCATTTAACCAATAATCTCTTTTTTGTCTCACTCCACCTCCTCATCTGTACACCTCTTTCTCTCTCTCTCTCCCCCATAGAATCTTGGGGTCTTTTGCCATCGCCCTCCCCACTGTGCAGAATTACATAATTCTGCAAAGGGAAATGAGGGTCATCCCTTGGCTAATGACTTGTCACTCTAGCCAACTATGTGACCCTTGTCTTCTCTTTCAATTACCTTTCTGTAGGGTCATTATCCTATAGAAAGTTGAGTCTTTAGATAATGGCCTGGTTTCAGCTATACTAAAGTCATCCACATGACATTATTTTCTCATGGTGGGGTCACTCTTCAGTTTTTCTTTCATTTTTTTTAATGCCACAAGCTGGGGATAGGATTTTTTTGGGTGGACCCCCAAATGCCACGTGTCTAGATCATAGGTGGGGGTGATACAGGGGTCTGATCCTCCCAATAAAGGCTTTGTTGATGATGTTCAGATTGGGGGTAGGGTATGGAAGGTCCATATTCCAAATTCTCCTTTTTTTCAAATCTCATTTGGCTACCATTAATGCCTTTGCCATTCCCTTGCAAGATCGTTTTCCCATTTGTACAAACGCCATTTGGTCTTCTTCTACCTTTTCTGCAGATTCTCTCTGCAACAACCGGTGCCTTATCAGAATTTTCTGTCATTTTATTACTTTCTCTCGCTCAGCGAATATCTATCTTCTATATTTTTGCTCTTTTGCTCCTTTCGCTATCTTTTGTCCATTTCACTTTCTATATAATAAAAGATAGGTTAAAATAAAATATGATTTTTGTCTATGTATTTTGAATTTCATTGCATTTTAGTCATGGTTCTTTCAAATTTCAAATTCAGATAAATTTAAGTATTAGTAATTTGAAGTTCATATTTTTAATCAAAGTTGATTGAATAATTATAATAATTTCCTAAGAAGAAAATTCGCAATGTAGGTGTCTTCTAAAATATATTGAAATATATTGAGGGAAGTCAATTAATCTTTTTTAAAAAAATGATTCATTGAAAATACAACAATTAAAAAAAATGAATTGCAAATTACAAAGACCAAAATGACATTTTAATTTCAACTTTATTATTATTTGTGCAAGTACTTCTAAGAATTGTTATGAACCAATGATATCATTTTGTTTTGCTATTTTGTTTTTCAGTAAAACAGATGGTAGAGGGTGGAGATTTTAAGATCAGACCTCAGTGGTAG

mRNA sequence

ATGATCGGCCTTTTCTCCTTGGAGTCATGTTGGAATGCTCACATTCCATCAACTACAGCGATAAAGACAGAGAACGAGAAGGAGAGGAGAGAGAGAAAGAGATGGAGAGAGAGGGGGAGAGCTAATAACAATTGCAGTGGGCAGAGAGCCTACAGAGACATATCAGTATCGAATATTGTTGCGGCAAAAGTACCGAAGGAAGGTGACTATGTTCAACGGCAAAATGGAGAAACTCGATTCATCTTGGGGTCTGATCCTCCCAATAAAGGCTTTGTTGATGATGTTCAGATTGGGGTAAAACAGATGGTAGAGGGTGGAGATTTTAAGATCAGACCTCAGTGGTAG

Coding sequence (CDS)

ATGATCGGCCTTTTCTCCTTGGAGTCATGTTGGAATGCTCACATTCCATCAACTACAGCGATAAAGACAGAGAACGAGAAGGAGAGGAGAGAGAGAAAGAGATGGAGAGAGAGGGGGAGAGCTAATAACAATTGCAGTGGGCAGAGAGCCTACAGAGACATATCAGTATCGAATATTGTTGCGGCAAAAGTACCGAAGGAAGGTGACTATGTTCAACGGCAAAATGGAGAAACTCGATTCATCTTGGGGTCTGATCCTCCCAATAAAGGCTTTGTTGATGATGTTCAGATTGGGGTAAAACAGATGGTAGAGGGTGGAGATTTTAAGATCAGACCTCAGTGGTAG

Protein sequence

MIGLFSLESCWNAHIPSTTAIKTENEKERRERKRWRERGRANNNCSGQRAYRDISVSNIVAAKVPKEGDYVQRQNGETRFILGSDPPNKGFVDDVQIGVKQMVEGGDFKIRPQW

Homology

[Close]

BLAST of ClCG01G022740 vs. NCBI nr
Match: KGN49203.1 (hypothetical protein Csa_002915 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 3.7e-09
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 33 KRWRERGRANNNCSGQRAYRDISVSNIVAAKVPKEGDYVQR 74
          +R R+RGRAN+NCSGQRAYRDIS+SNIVAAKV KEGDYVQR
Sbjct: 38 ERERKRGRANSNCSGQRAYRDISISNIVAAKVTKEGDYVQR 78

[Close]

BLAST of ClCG01G022740 vs. NCBI nr
Match: KAA0052708.1 (hypothetical protein E6C27_scaffold120G003210 [Cucumis melo var. makuwa] >TYK13116.1 hypothetical protein E5676_scaffold255G007260 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-04
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 47  GQRAYRDISVSNIVAAKVPKEGDYVQR-----QNGETRFILGSD-PPNKGFVDDVQ 97
           GQRAYRDIS+SNIVAAKV KEGDYVQR     Q+ ++  IL +D  P  G V+ ++
Sbjct: 105 GQRAYRDISISNIVAAKVTKEGDYVQRNWCIDQSNQSLAILSTDLSPIPGKVEKLE 160

[Close]

BLAST of ClCG01G022740 vs. ExPASy TrEMBL
Match: A0A0A0KI11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517110 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-09
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 33 KRWRERGRANNNCSGQRAYRDISVSNIVAAKVPKEGDYVQR 74
          +R R+RGRAN+NCSGQRAYRDIS+SNIVAAKV KEGDYVQR
Sbjct: 38 ERERKRGRANSNCSGQRAYRDISISNIVAAKVTKEGDYVQR 78

[Close]

BLAST of ClCG01G022740 vs. ExPASy TrEMBL
Match: A0A5D3CRT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007260 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-04
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 47  GQRAYRDISVSNIVAAKVPKEGDYVQR-----QNGETRFILGSD-PPNKGFVDDVQ 97
           GQRAYRDIS+SNIVAAKV KEGDYVQR     Q+ ++  IL +D  P  G V+ ++
Sbjct: 105 GQRAYRDISISNIVAAKVTKEGDYVQRNWCIDQSNQSLAILSTDLSPIPGKVEKLE 160

The following BLAST results are available for this feature:

BLAST of ClCG01G022740 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49203.1	3.7e-09	85.37	hypothetical protein Csa_002915 [Cucumis sativus]	[more]
KAA0052708.1	2.1e-04	57.14	hypothetical protein E6C27_scaffold120G003210 [Cucumis melo var. makuwa] >TYK131...	[more]

BLAST of ClCG01G022740 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG01G022740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI11	1.8e-09	85.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517110 PE=4 SV=1	[more]
A0A5D3CRT7	1.0e-04	57.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of ClCG01G022740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G022740.2	ClCG01G022740.2	mRNA