ClCG01G013610 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G013610
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionMuDRA-like transposase
LocationCG_Chr01: 26908350 .. 26909554 (-)
RNA-Seq ExpressionClCG01G013610
SyntenyClCG01G013610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAATACCAATCCATGGGATGAGACATGTAGTACACAACAACATTCTGGTCGATAGAGGGTTCATAATTCTAAAGTGGATGGACCCACAGACAATGTTGTTAATTGGAATGGTGGAGGTGATTGGCATGAGAATATCAAATAGGATATTGGGTGTGATCTACTTGTAAATGAGTCTATGCTTATTAGAGTGTCCGATATGCATCCGACACCAAATGTGCCTCCTATCTTCAATTCGCTACTAGAAACTCCAATTTCTGCACAATGAGTTTGGTTATCTCGTTGGAAATGTGCATACATCTGTTGGTTGTGGTACTTTCAAAGTTGGACCTTTTGTTATGCAGCCACATTCCTCGTCTGGTACGAATGTAGAGGTAGGGCAAATCTCTTTCTCAAAGGATGATATGCAAATGATGTTGTTGTTGCTAGCTATCAAGGAGAATTTTGAGACGTAGATTCGAAAGTCAAATAAGAAATTGTATAGTGTGAGGTGTAACCACGAGATGTGTGAATGGGCTGTACGAGTGACGAAGATGGAAGGATGTGACATATTCAAGATTATAAAATATACGACTGTCTACATGTGCTTTATTGAAGTTTTGAACCACGATCACCGTCAAGCAAGTGCATTTGTAGTTGATCAACTTATAAAGGACAAGTTTGGTGGGTCGTGCTGAGAAACCACGATCACCGATGTTCATGTGCTCATGTAGTTGGCATCCTGGTGCTCATGCTGTTGAAGACATTTGTGTGTTCATGCAGTCGGCGTTTGGGTGCTTGTGTAGTCGCCAACGTTTGTTTGCTCGTGTTGTCGTCGGTTAGATGGAGGAGGTGCAGTTGACTTCTTGGTTTCAAAAGGGAAAGCGGGAGAACTAATTAGGCCGTATTTGTTTTTTTTTTTTTTCAAAAAACTAAGGGGGAAATGCAAAATTAGGGTGGGTGGGGGGGTGGGGGGGGGGGGTGAAAGGANTTATTGAAGTTTTGAACCACGATCACCGTCAAGCAAGTGCATTTGTAGTTGATCAACTTATAAAGGACAAGTTTGGTGGGTCGTGCTGAGAAACCACGATCACCGATGTTCATGTGCTCATGTAGTTGGCATCCTGGTGCTCATGCTGTTGAAGACATTTGTGTGTTCATGCAGTCGGCGTTTGGGTGCTTGTGTAGTCGCCAACGTTTGTTTGCTCGTGTTGTCGTCGGTTAG

mRNA sequence

ATGACAATACCAATCCATGGGATGAGACATGTAGTACACAACAACATTCTGGTCGATAGAGGGTTCATAATTCTAAAGTGGATGGACCCACAGACAATGTTGTTAATTGGAATGGTGGAGAAACTCCAATTTCTGCACAATGAGTTTGGTTATCTCGTTGGAAATGTGCATACATCTGTTGGTTGTGGTACTTTCAAAGTTGGACCTTTTGTTATGCAGCCACATTCCTCGTCTGGTACGAATGTAGAGGTAGGGCAAATCTCTTTCTCAAAGGATGATATGCAAATGATGTTGTTGTTGCTAGCTATCAAGGAGAATTTTGAGACTGTGAGGTGTAACCACGAGATGTGTGAATGGGCTGTACGAGTGACGAAGATGGAAGGATGTGACATATTCAAGATTATAAAATATACGACTGTCTACATGTGCTTTATTGAAGTTTTGAACCACGATCACCGTCAAGCAAGTGCATTTAAACCACGATCACCGATGTTCATGTGCTCATGTAGTTGGCATCCTGGTGCTCATGCTGTTGAAGACATTTGTGTGTTCATGCAGTCGGCGTTTGGGTGCTTGTGTAATGGAGGAGGTGCAGTTGACTTCTTGGTTTCAAAAGGGAAAGCGGGAGAACTAATTAGGCCGACAAGTTTGGTGGGTCGTGCTGAGAAACCACGATCACCGATGTTCATGTGCTCATGTAGTTGGCATCCTGGTGCTCATGCTGTTGAAGACATTTGTGTGTTCATGCAGTCGGCGTTTGGGTGCTTGTGTAGTCGCCAACGTTTGTTTGCTCGTGTTGTCGTCGGTTAG

Coding sequence (CDS)

ATGACAATACCAATCCATGGGATGAGACATGTAGTACACAACAACATTCTGGTCGATAGAGGGTTCATAATTCTAAAGTGGATGGACCCACAGACAATGTTGTTAATTGGAATGGTGGAGAAACTCCAATTTCTGCACAATGAGTTTGGTTATCTCGTTGGAAATGTGCATACATCTGTTGGTTGTGGTACTTTCAAAGTTGGACCTTTTGTTATGCAGCCACATTCCTCGTCTGGTACGAATGTAGAGGTAGGGCAAATCTCTTTCTCAAAGGATGATATGCAAATGATGTTGTTGTTGCTAGCTATCAAGGAGAATTTTGAGACTGTGAGGTGTAACCACGAGATGTGTGAATGGGCTGTACGAGTGACGAAGATGGAAGGATGTGACATATTCAAGATTATAAAATATACGACTGTCTACATGTGCTTTATTGAAGTTTTGAACCACGATCACCGTCAAGCAAGTGCATTTAAACCACGATCACCGATGTTCATGTGCTCATGTAGTTGGCATCCTGGTGCTCATGCTGTTGAAGACATTTGTGTGTTCATGCAGTCGGCGTTTGGGTGCTTGTGTAATGGAGGAGGTGCAGTTGACTTCTTGGTTTCAAAAGGGAAAGCGGGAGAACTAATTAGGCCGACAAGTTTGGTGGGTCGTGCTGAGAAACCACGATCACCGATGTTCATGTGCTCATGTAGTTGGCATCCTGGTGCTCATGCTGTTGAAGACATTTGTGTGTTCATGCAGTCGGCGTTTGGGTGCTTGTGTAGTCGCCAACGTTTGTTTGCTCGTGTTGTCGTCGGTTAG

Protein sequence

MTIPIHGMRHVVHNNILVDRGFIILKWMDPQTMLLIGMVEKLQFLHNEFGYLVGNVHTSVGCGTFKVGPFVMQPHSSSGTNVEVGQISFSKDDMQMMLLLLAIKENFETVRCNHEMCEWAVRVTKMEGCDIFKIIKYTTVYMCFIEVLNHDHRQASAFKPRSPMFMCSCSWHPGAHAVEDICVFMQSAFGCLCNGGGAVDFLVSKGKAGELIRPTSLVGRAEKPRSPMFMCSCSWHPGAHAVEDICVFMQSAFGCLCSRQRLFARVVVG
Homology
BLAST of ClCG01G013610 vs. NCBI nr
Match: XP_038902336.1 (uncharacterized protein LOC120088970 [Benincasa hispida])

HSP 1 Score: 97.4 bits (241), Expect = 1.9e-16
Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 0

Query: 68  GPFVMQPHSSSGTNVEVGQISFSKDDMQMMLLLLAIKENFE-----------TVRCNHEM 127
           G  +M   SSS T+VEV QI  SK D++M L +L I  NFE           TV+C  + 
Sbjct: 31  GKLIMPGTSSSETDVEVDQIFLSKSDLKMRLSILCINNNFEYKVRKSTKSLFTVKCIEDN 90

Query: 128 CEWAVRVTKMEGCDIFKIIKYTTVYMCFIEVLNHDHRQAS 157
           C+W++R  K+ GCDIFKI+KY   + CFI +LNHDHRQA+
Sbjct: 91  CKWSLRAVKISGCDIFKIMKYMRSHTCFIGILNHDHRQAT 130

BLAST of ClCG01G013610 vs. NCBI nr
Match: XP_038902318.1 (uncharacterized protein LOC120088954 [Benincasa hispida])

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-13
Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 0

Query: 54  GNVHTSVGCGTFKVGPFVMQPHSSSGTNVEVGQISFSKDDMQMMLLLLAIKENFE----- 113
           G +++   C   + G  +M   SSS T+VEVGQI  SK D++M L +L I  NFE     
Sbjct: 85  GRLNSMSSC---RKGELIMSGTSSSETDVEVGQIFLSKIDLKMRLSILYIINNFEYKVRK 144

Query: 114 ------TVRCNHEMCEWAVRVTKMEGCDIFKIIKYTTVYMCFIEVLNHDHRQASA 158
                 TV+C  + C+W +   K+  CDIFKI K+   + C I +LNHDHRQA+A
Sbjct: 145 STKSLFTVKCIEDNCKWILHAVKIPECDIFKITKHIRSHTCSIGILNHDHRQATA 196

BLAST of ClCG01G013610 vs. NCBI nr
Match: XP_038905828.1 (uncharacterized protein LOC120091780 [Benincasa hispida] >XP_038905829.1 uncharacterized protein LOC120091780 [Benincasa hispida])

HSP 1 Score: 85.9 bits (211), Expect = 5.9e-13
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 0

Query: 71  VMQPHSSSG-TNVEVGQISFSKDDMQMMLLLLAIKENFE-----------TVRCNHEMCE 130
           +M   SS G  +VEVGQ+  SK +++M L +L+I +NFE           T++C  + C+
Sbjct: 118 IMPDTSSFGIEDVEVGQLFLSKKNLKMRLSILSINKNFEFKVGKSTKSLFTIKCIGKTCK 177

Query: 131 WAVRVTKMEGCDIFKIIKYTTVYMCFIEVLNHDHRQASA 158
           W++R  KMEG DIFKI KY + + C I +LNHDHRQ +A
Sbjct: 178 WSLRAVKMEGSDIFKITKYCSSHTCSIGILNHDHRQVTA 216

BLAST of ClCG01G013610 vs. NCBI nr
Match: KAA0068206.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 5.5e-11
Identity = 43/116 (37.07%), Postives = 61/116 (52.59%), Query Frame = 0

Query: 54  GNVHTSVGCGTFKVGPFVMQPHSSSGTNVEVGQISFSKDDMQMMLLLLAIKENFE----- 113
           G VH S      K    V    SS+   ++VGQI F K D+ M L +LA+K+NF+     
Sbjct: 207 GKVHYSSSSRKLKTKGSVWSEESSTSEELDVGQIFFCKRDLSMRLSVLAMKKNFQFVVKK 266

Query: 114 ------TVRCNHEMCEWAVRVTKMEGCDIFKIIKYTTVYMCFIEVLNHDHRQASAF 159
                  VRC    C W +R  +++  +IFKI KY  V+ C ++ LN DHRQA ++
Sbjct: 267 STKEVLFVRCIDNKCGWRLRAVRLKDSNIFKIKKYVKVHSCSLKFLNRDHRQAKSW 322

BLAST of ClCG01G013610 vs. NCBI nr
Match: XP_038889297.1 (uncharacterized protein LOC120079207 [Benincasa hispida])

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-10
Identity = 45/117 (38.46%), Postives = 64/117 (54.70%), Query Frame = 0

Query: 72  MQPHSSSGTNVEVGQISFSKDDMQMMLLLLAIKENFE-----------TVRCNHEMCEWA 131
           M   S S  +V++G I  SK D++M L +LAI+ NF+            V C  E C+W 
Sbjct: 45  MPGQSYSSEDVQIGDIFLSKKDLKMRLSMLAIRGNFQFRLKKSTTTLYKVICLVEECKWR 104

Query: 132 VRVTKMEGCDIFKIIKYTTVYMCFIEVLNHDHRQASAF----KPRSPMFMCSCSWHP 174
           +R  K++ C+IFKI KY  V+ C  E+L +DHRQAS++       S     SCS+ P
Sbjct: 105 IRAVKLKICEIFKIFKYDNVHTCRNEILTNDHRQASSWVLGHLISSKFEDVSCSYRP 161

BLAST of ClCG01G013610 vs. ExPASy TrEMBL
Match: A0A5A7VNP6 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001920 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.7e-11
Identity = 43/116 (37.07%), Postives = 61/116 (52.59%), Query Frame = 0

Query: 54  GNVHTSVGCGTFKVGPFVMQPHSSSGTNVEVGQISFSKDDMQMMLLLLAIKENFE----- 113
           G VH S      K    V    SS+   ++VGQI F K D+ M L +LA+K+NF+     
Sbjct: 207 GKVHYSSSSRKLKTKGSVWSEESSTSEELDVGQIFFCKRDLSMRLSVLAMKKNFQFVVKK 266

Query: 114 ------TVRCNHEMCEWAVRVTKMEGCDIFKIIKYTTVYMCFIEVLNHDHRQASAF 159
                  VRC    C W +R  +++  +IFKI KY  V+ C ++ LN DHRQA ++
Sbjct: 267 STKEVLFVRCIDNKCGWRLRAVRLKDSNIFKIKKYVKVHSCSLKFLNRDHRQAKSW 322

BLAST of ClCG01G013610 vs. ExPASy TrEMBL
Match: A0A2I7YUI4 (MuDRA-like transposase OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-10
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 0

Query: 76  SSSGTNVEVGQISFSKDDMQMMLLLLAIKENFE-----------TVRCNHEMCEWAVRVT 135
           SS+    +VGQI FSK D+ M L +LA+K+NF+            VRC    C W +R  
Sbjct: 228 SSTSEEFDVGQIFFSKKDLSMRLSVLAMKKNFQFVVKKSTKEVLFVRCIDNKCGWRLRAM 287

Query: 136 KMEGCDIFKIIKYTTVYMCFIEVLNHDHRQASAF 159
           +++  +IFKI KY  V+ C ++VLN DHRQA ++
Sbjct: 288 RLKDSNIFKIKKYVKVHSCSLDVLNRDHRQAKSW 321

BLAST of ClCG01G013610 vs. ExPASy TrEMBL
Match: A0A6N0C346 (MURA transposase OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-10
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 0

Query: 76  SSSGTNVEVGQISFSKDDMQMMLLLLAIKENFE-----------TVRCNHEMCEWAVRVT 135
           SS+    +VGQI FSK D+ M L +LA+K+NF+            VRC    C W +R  
Sbjct: 228 SSTSEEFDVGQIFFSKKDLSMRLSVLAMKKNFQFVVKKSTKEVLFVRCIDNKCGWRLRAM 287

Query: 136 KMEGCDIFKIIKYTTVYMCFIEVLNHDHRQASAF 159
           +++  +IFKI KY  V+ C ++VLN DHRQA ++
Sbjct: 288 RLKDSNIFKIKKYVKVHSCSLDVLNRDHRQAKSW 321

BLAST of ClCG01G013610 vs. ExPASy TrEMBL
Match: A0A6J1DPC2 (uncharacterized protein LOC111022579 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022579 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.8e-10
Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 0

Query: 76  SSSGTNVEVGQISFSKDDMQMMLLLLAIKENFE-----------TVRCNHEMCEWAVRVT 135
           SS+    +VGQI F K D+ M L ++A+K NFE            + C  E C+W +R  
Sbjct: 180 SSTNDEFDVGQIFFGKRDLSMKLSVMAMKRNFEFRVKKSTKELIYIVCVDENCKWRIRAL 239

Query: 136 KMEGCDIFKIIKYTTVYMCFIEVLNHDHRQASAF 159
           K+ G DIF+I KY  V+ C ++++N  HRQA A+
Sbjct: 240 KLGGSDIFRISKYVNVHSCSLDLMNRHHRQAKAW 273

BLAST of ClCG01G013610 vs. ExPASy TrEMBL
Match: A0A6J1DRN0 (uncharacterized protein LOC111022579 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022579 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.8e-10
Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 0

Query: 76  SSSGTNVEVGQISFSKDDMQMMLLLLAIKENFE-----------TVRCNHEMCEWAVRVT 135
           SS+    +VGQI F K D+ M L ++A+K NFE            + C  E C+W +R  
Sbjct: 180 SSTNDEFDVGQIFFGKRDLSMKLSVMAMKRNFEFRVKKSTKELIYIVCVDENCKWRIRAL 239

Query: 136 KMEGCDIFKIIKYTTVYMCFIEVLNHDHRQASAF 159
           K+ G DIF+I KY  V+ C ++++N  HRQA A+
Sbjct: 240 KLGGSDIFRISKYVNVHSCSLDLMNRHHRQAKAW 273

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038902336.11.9e-1648.00uncharacterized protein LOC120088970 [Benincasa hispida][more]
XP_038902318.11.2e-1341.74uncharacterized protein LOC120088954 [Benincasa hispida][more]
XP_038905828.15.9e-1344.44uncharacterized protein LOC120091780 [Benincasa hispida] >XP_038905829.1 unchara... [more]
KAA0068206.15.5e-1137.07MuDRA-like transposase [Cucumis melo var. makuwa][more]
XP_038889297.11.2e-1038.46uncharacterized protein LOC120079207 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VNP62.7e-1137.07MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2... [more]
A0A2I7YUI41.7e-1041.49MuDRA-like transposase OS=Cucumis sativus OX=3659 PE=4 SV=1[more]
A0A6N0C3461.7e-1041.49MURA transposase OS=Cucumis sativus OX=3659 PE=4 SV=1[more]
A0A6J1DPC23.8e-1039.36uncharacterized protein LOC111022579 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DRN03.8e-1039.36uncharacterized protein LOC111022579 isoform X1 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G013610.1ClCG01G013610.1mRNA