ClCG01G012740 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G012740
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr01: 25592384 .. 25592852 (-)
RNA-Seq Expression	ClCG01G012740
Synteny	ClCG01G012740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATCCTTACTATTTCCGTTAAGGAATGCGGCTTAATTGAACAGTTAGCAAATCTGTACCCCTAGCGGCCTATTCTCTAGTAGCTGATTCTAGACCGACCAGCCGATTCAATTGCAGCTACTTCGAAAAAATAGCCTATTATGGCTATGTAAAGGGACCGGCTTCCCGGAAAGGTTAATGCCCTAAGATTGGACTCATCCCCAGTTTCCACAGATGGAGGGGCGAACTCCTCAACAAAAGAGGGCTCCTACTAGCTCTCCCCCCGTAAGAACCGCACGTGCGAGTTCCCCCGTATACGGCTCAAATGGCGAAGGCCCTTTCCTTCGCGCTTGGTAAGCGCTTCGCTTTAGCCAAGCTTACTGCTAGCCTATCGGCGTCAGCCAAGCTTCGACTGCGACTGCTCGTTGCTTCTGGCCGCCTATTGATTTTAGGTGGAGGACGACAGTTCACATTATTTTCTGCGTAA

mRNA sequence

ATGCGATCCTTACTATTTCCCTACTTCGAAAAAATAGCCTATTATGGCTATGTAAAGGGACCGGCTTCCCGGAAAGAACCGCACGTGCGAGTTCCCCCGTATACGGCTCAAATGGCGAAGGCCCTTTCCTTCGCGCTTGGTAAGCGCTTCGCTTTAGCCAAGCTTACTGCTAGCCTATCGGCGTCAGCCAAGCTTCGACTGCGACTGCTCGTTGCTTCTGGCCGCCTATTGATTTTAGGTGGAGGACGACAGTTCACATTATTTTCTGCGTAA

Coding sequence (CDS)

ATGCGATCCTTACTATTTCCCTACTTCGAAAAAATAGCCTATTATGGCTATGTAAAGGGACCGGCTTCCCGGAAAGAACCGCACGTGCGAGTTCCCCCGTATACGGCTCAAATGGCGAAGGCCCTTTCCTTCGCGCTTGGTAAGCGCTTCGCTTTAGCCAAGCTTACTGCTAGCCTATCGGCGTCAGCCAAGCTTCGACTGCGACTGCTCGTTGCTTCTGGCCGCCTATTGATTTTAGGTGGAGGACGACAGTTCACATTATTTTCTGCGTAA

Protein sequence

MRSLLFPYFEKIAYYGYVKGPASRKEPHVRVPPYTAQMAKALSFALGKRFALAKLTASLSASAKLRLRLLVASGRLLILGGGRQFTLFSA

Homology

[Close]

BLAST of ClCG01G012740 vs. NCBI nr
Match: CAD1835928.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 84.7 bits (208), Expect = 4.4e-13
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 20 GPASRKEPHVRVPPYTAQMAKALSFALGKRFALAKLTASLSASAKLRLRLLVASGRLL 78
          G  S  EPHVRVPP+TAQ+AKALSFALGKRFA+AKLTASLSA AKLR RLLVASGRL+
Sbjct: 39 GQKSGIEPHVRVPPHTAQVAKALSFALGKRFAVAKLTASLSARAKLRPRLLVASGRLI 96

[Close]

BLAST of ClCG01G012740 vs. NCBI nr
Match: TMX00936.1 (hypothetical protein EJD97_025590 [Solanum chilense])

HSP 1 Score: 82.0 bits (201), Expect = 2.8e-12
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 24 RKEPHVRVPPYTAQMAKALSFALGKRFALAKLTASLSASAKLRLRLLVASGRLL 78
          R EPHVRVPP+TAQ+AKALSFALGKRFA+AKLT+SLSA AKLR RLLV SGRL+
Sbjct: 37 RTEPHVRVPPHTAQVAKALSFALGKRFAVAKLTSSLSAIAKLRPRLLVTSGRLI 90

[Close]

BLAST of ClCG01G012740 vs. NCBI nr
Match: KAF3973006.1 (hypothetical protein CMV_003550 [Castanea mollissima])

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 29 VRVPPYTAQMAKALSFALGKRFALAKLTASLSASAKLRLRLLVASGRL 77
          +RVPP+TAQ AKALSFALGKRFA+AKLTASLSA AKLR RLLVASGRL
Sbjct: 1  MRVPPHTAQAAKALSFALGKRFAVAKLTASLSARAKLRPRLLVASGRL 48

[Close]

BLAST of ClCG01G012740 vs. NCBI nr
Match: PHU15029.1 (hypothetical protein BC332_16234 [Capsicum chinense])

HSP 1 Score: 71.6 bits (174), Expect = 3.8e-09
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 29 VRVPPYTAQMAKALSFALGKRFALAKLTASLSASAKLRLRLLVASGRLL 78
          +RVPPYTAQMAK LSFALGKRF +AKLTA+LSA AKLR RLL+A GRL+
Sbjct: 1  MRVPPYTAQMAKTLSFALGKRFVVAKLTANLSAKAKLRPRLLIAFGRLI 49

[Close]

BLAST of ClCG01G012740 vs. NCBI nr
Match: PHT34151.1 (hypothetical protein CQW23_25951 [Capsicum baccatum])

HSP 1 Score: 58.2 bits (139), Expect = 4.4e-05
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 36 AQMAKALSFALGKRFALAKLTASLSASAKLRLRLLVASGRLLI 79
          AQ+AKALSFALGKRFA+A+LTASLSA AKLR RLLVA GR ++
Sbjct: 2  AQVAKALSFALGKRFAVAELTASLSARAKLRPRLLVAFGRFIL 44

[Close]

BLAST of ClCG01G012740 vs. ExPASy TrEMBL
Match: A0A6V7PYZ9 (Uncharacterized protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS19139 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.1e-13
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 20 GPASRKEPHVRVPPYTAQMAKALSFALGKRFALAKLTASLSASAKLRLRLLVASGRLL 78
          G  S  EPHVRVPP+TAQ+AKALSFALGKRFA+AKLTASLSA AKLR RLLVASGRL+
Sbjct: 39 GQKSGIEPHVRVPPHTAQVAKALSFALGKRFAVAKLTASLSARAKLRPRLLVASGRLI 96

[Close]

BLAST of ClCG01G012740 vs. ExPASy TrEMBL
Match: A0A6N2C2A2 (Uncharacterized protein OS=Solanum chilense OX=4083 GN=EJD97_025590 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 45/54 (83.33%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 24 RKEPHVRVPPYTAQMAKALSFALGKRFALAKLTASLSASAKLRLRLLVASGRLL 78
          R EPHVRVPP+TAQ+AKALSFALGKRFA+AKLT+SLSA AKLR RLLV SGRL+
Sbjct: 37 RTEPHVRVPPHTAQVAKALSFALGKRFAVAKLTSSLSAIAKLRPRLLVTSGRLI 90

[Close]

BLAST of ClCG01G012740 vs. ExPASy TrEMBL
Match: K4CCK7 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.9e-10
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 26  EPHVRVPPYTAQMAKALSFALGKRFALAKLTASLSASAKLRLRLLVASGRLL 78
           +PHVRVPP+TAQ+AKALS ALGK F LA LTASLSA AKLR RLLVASG L+
Sbjct: 65  QPHVRVPPHTAQVAKALSIALGKSFTLANLTASLSARAKLRPRLLVASGHLI 116

[Close]

BLAST of ClCG01G012740 vs. ExPASy TrEMBL
Match: A0A7N2MTH6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.9e-10
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 29 VRVPPYTAQMAKALSFALGKRFALAKLTASLSASAKLRLRLLVASGRL 77
          +RVPP+TAQ AKALSFALGKRFA+AKLTASLSA AKLR RLLVASGRL
Sbjct: 1  MRVPPHTAQAAKALSFALGKRFAVAKLTASLSARAKLRPRLLVASGRL 48

[Close]

BLAST of ClCG01G012740 vs. ExPASy TrEMBL
Match: A0A2G3C8F2 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_16234 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-09
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 29 VRVPPYTAQMAKALSFALGKRFALAKLTASLSASAKLRLRLLVASGRLL 78
          +RVPPYTAQMAK LSFALGKRF +AKLTA+LSA AKLR RLL+A GRL+
Sbjct: 1  MRVPPYTAQMAKTLSFALGKRFVVAKLTANLSAKAKLRPRLLIAFGRLI 49

The following BLAST results are available for this feature:

BLAST of ClCG01G012740 vs. NCBI nr


Match Name	E-value	Identity	Description
CAD1835928.1	4.4e-13	82.76	unnamed protein product [Ananas comosus var. bracteatus]	[more]
TMX00936.1	2.8e-12	83.33	hypothetical protein EJD97_025590 [Solanum chilense]	[more]
KAF3973006.1	1.0e-09	87.50	hypothetical protein CMV_003550 [Castanea mollissima]	[more]
PHU15029.1	3.8e-09	79.59	hypothetical protein BC332_16234 [Capsicum chinense]	[more]
PHT34151.1	4.4e-05	79.07	hypothetical protein CQW23_25951 [Capsicum baccatum]	[more]

BLAST of ClCG01G012740 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG01G012740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6V7PYZ9	2.1e-13	82.76	Uncharacterized protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS...	[more]
A0A6N2C2A2	1.4e-12	83.33	Uncharacterized protein OS=Solanum chilense OX=4083 GN=EJD97_025590 PE=4 SV=1	[more]
K4CCK7	4.9e-10	78.85	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]
A0A7N2MTH6	4.9e-10	87.50	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2G3C8F2	1.9e-09	79.59	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_16234 PE=4 SV=1	[more]

BLAST of ClCG01G012740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G012740.1	ClCG01G012740.1	mRNA