ClCG01G010580 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G010580
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr01: 16236928 .. 16238091 (+)
RNA-Seq ExpressionClCG01G010580
SyntenyClCG01G010580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGACCCCAATACCTCCATCGTGGCCATTCTCGATACTTCCACAGCCATTAAGAGATTATCTGATAGTGAGGAATGTGATGTAGAGGTTTGCCACATTCCTCCACCGAAGGCGAAATTGAAGACGAAGTCGAAGATGCCAGCAAAACAAGAGGCACCTCGACGTACAACCTAGAGGCGGAGAGAAGTCACACCATATACCCCTGTGGATGCAAAGAGGGCGAGGAAGTATATGGCTCTGAGTAGAGTGATCTACAATCCGACACATCTCGTGCCCCAAGACGTCTTGAATGCATTCATGCAATGGTGAAAGCTGATGATGTCGAACCACGTGTACTAGGTATGGGGGCACTGTTCCAGCCCAAGATGACCACCTGAGAGGTTTTCTGGGAGTTGGTGACGAACAGCCAATGGGTACATTGCAACGTAATAATTATCCTCATCGCTCTATGTTGTTTGTTAGTGATCATTACCAATAAATATTGCTAACAAAATATAACATTGCAGGTGCTCGAAGGCATACTAGATTTCTTGAGGAAGAAGTTCATTGCACATCCAGAACTATGTATCTATTGCTTCACCATATTTCCTATACGGTATGTTTCCATACTATTGAACTACAAAATTATTTTATATAATGCACTAAGATTTTGTATTTCAACTATACAACGGCACCTAAACCTGCATACTGAGTGATATCTTGTTCAAAGCTATCTACGATAAGAGTGAGGAAAAGGTCACTGAAATCTGGTTGAATGAGGATGCACTAACGGAGTTGGTGTTCGGGTTAGCACCATATTCGATTCTGTGGGCGGATGTTGATTACGTATATAGCACAATTAATATAGAACACTGGATCCTTCTGGTGTTCGACATTAACCTCGGAGAGGTCATCCTATATAACTCATACCTGACGTATGTCTCCCAGAAGGACATCTTGATCGCCCTGCCACCTCTGATATACACACTATCGTCTTTGTGTGATTTCTACAAGATGAGGGATCGCAAACCACACATTGTTGCTGCCCCTTGGAGTTTGTACCGTACAGATACCGGCAATATCCAAGGTAGCAAGACTCTAAATTGTAGTATTTTTTTTTTCTTAAATTTTTTGAGTATCTAGTTACGGGAACCCCGATCAAGAGTTCCCTAACTCAGGATAA

mRNA sequence

ATGTTGACCCCAATACCTCCATCGTGGCCATTCTCGATACTTCCACAGCCATTAAGAGATTATCTGATAGTGAGGAATGTGATAGGTTTGCCACATTCCTCCACCGAAGGCGAAATTGAAGACGAAGTCGAAGATGCCAGCAAAACAAGAGGCACCTCGACGTACAACCTAGAGGCGGAGAGAAGTCACACCATATACCCCTGTGGATGCAAAGAGGGCGAGGAAAGTGATCTACAATCCGACACATCTCGTGCCCCAAGACGTCTTGAATGCATTCATGCAATGGTGAAAGCTGATGATGTCGAACCACGTGTACTAGCCCAAGATGACCACCTGAGAGGTTTTCTGGGAGTTGGTGACGAACAGCCAATGGGTACATTGCAACGTAATAATTATCCTCATCGCTCTATGTTGTTTGTGCTCGAAGGCATACTAGATTTCTTGAGGAAGAAGTTCATTGCACATCCAGAACTATGTATCTATTGCTTCACCATATTTCCTATACGTGATATCTTGTTCAAAGCTATCTACGATAAGAGTGAGGAAAAGGTCACTGAAATCTGGTTGAATGAGGATGCACTAACGGAGTTGGTGTTCGGGTTAGCACCATATTCGATTCTGTGGGCGGATGTTGATTACGTATATAGCACAATTAATATAGAACACTGGATCCTTCTGGTGTTCGACATTAACCTCGGAGAGGTCATCCTATATAACTCATACCTGACGTATGTCTCCCAGAAGGACATCTTGATCGCCCTGCCACCTCTGATATACACACTATCGTCTTTGTGTGATTTCTACAAGATGAGGGATCGCAAACCACACATTGTTGCTGCCCCTTGGAGTTTGTACCGTACAGATACCGGCAATATCCAAGTATCTAGTTACGGGAACCCCGATCAAGAGTTCCCTAACTCAGGATAA

Coding sequence (CDS)

ATGTTGACCCCAATACCTCCATCGTGGCCATTCTCGATACTTCCACAGCCATTAAGAGATTATCTGATAGTGAGGAATGTGATAGGTTTGCCACATTCCTCCACCGAAGGCGAAATTGAAGACGAAGTCGAAGATGCCAGCAAAACAAGAGGCACCTCGACGTACAACCTAGAGGCGGAGAGAAGTCACACCATATACCCCTGTGGATGCAAAGAGGGCGAGGAAAGTGATCTACAATCCGACACATCTCGTGCCCCAAGACGTCTTGAATGCATTCATGCAATGGTGAAAGCTGATGATGTCGAACCACGTGTACTAGCCCAAGATGACCACCTGAGAGGTTTTCTGGGAGTTGGTGACGAACAGCCAATGGGTACATTGCAACGTAATAATTATCCTCATCGCTCTATGTTGTTTGTGCTCGAAGGCATACTAGATTTCTTGAGGAAGAAGTTCATTGCACATCCAGAACTATGTATCTATTGCTTCACCATATTTCCTATACGTGATATCTTGTTCAAAGCTATCTACGATAAGAGTGAGGAAAAGGTCACTGAAATCTGGTTGAATGAGGATGCACTAACGGAGTTGGTGTTCGGGTTAGCACCATATTCGATTCTGTGGGCGGATGTTGATTACGTATATAGCACAATTAATATAGAACACTGGATCCTTCTGGTGTTCGACATTAACCTCGGAGAGGTCATCCTATATAACTCATACCTGACGTATGTCTCCCAGAAGGACATCTTGATCGCCCTGCCACCTCTGATATACACACTATCGTCTTTGTGTGATTTCTACAAGATGAGGGATCGCAAACCACACATTGTTGCTGCCCCTTGGAGTTTGTACCGTACAGATACCGGCAATATCCAAGTATCTAGTTACGGGAACCCCGATCAAGAGTTCCCTAACTCAGGATAA

Protein sequence

MLTPIPPSWPFSILPQPLRDYLIVRNVIGLPHSSTEGEIEDEVEDASKTRGTSTYNLEAERSHTIYPCGCKEGEESDLQSDTSRAPRRLECIHAMVKADDVEPRVLAQDDHLRGFLGVGDEQPMGTLQRNNYPHRSMLFVLEGILDFLRKKFIAHPELCIYCFTIFPIRDILFKAIYDKSEEKVTEIWLNEDALTELVFGLAPYSILWADVDYVYSTINIEHWILLVFDINLGEVILYNSYLTYVSQKDILIALPPLIYTLSSLCDFYKMRDRKPHIVAAPWSLYRTDTGNIQVSSYGNPDQEFPNSG
Homology
BLAST of ClCG01G010580 vs. NCBI nr
Match: XP_038902498.1 (uncharacterized protein LOC120089158 [Benincasa hispida])

HSP 1 Score: 92.8 bits (229), Expect = 5.5e-15
Identity = 51/153 (33.33%), Postives = 87/153 (56.86%), Query Frame = 0

Query: 141 LEGILDFLRKKFIAHPELCIYCFTIFPI--------RDILFKAIYDKSEEKVTEIWLNED 200
           L  I +F+++KF   P++C+  FTI PI        RD ++K + +KS  +    W++E 
Sbjct: 166 LNVIFEFMKEKFYRQPDMCMARFTILPIGITSHLNSRDGVYKHMKNKSTLEAAVAWVDE- 225

Query: 201 ALTELVFGLAPYSILWADVDYVYSTINI-EHWILLVFDINLGEVILYNSYLTYVSQKDIL 260
            L + V G   + + W DVD++Y+T NI +HW+L+ FD+N G + +++S  +  S+K + 
Sbjct: 226 TLPDYVMG--KFDVKWLDVDFIYTTTNIDQHWMLVAFDLNRGRLFVFDSLPSMTSKKKLE 285

Query: 261 IALPPLIYTLSSLCDFYKMRDRKPHIVAAPWSL 285
             L  L YTL SL  +  ++  KP I  + W +
Sbjct: 286 SFLESLTYTLPSLLHYCDLKCSKPDIETSQWKI 315

BLAST of ClCG01G010580 vs. NCBI nr
Match: XP_038899753.1 (uncharacterized protein LOC120086987 [Benincasa hispida] >XP_038899754.1 uncharacterized protein LOC120086987 [Benincasa hispida])

HSP 1 Score: 77.8 bits (190), Expect = 1.8e-10
Identity = 44/149 (29.53%), Postives = 75/149 (50.34%), Query Frame = 0

Query: 147 FLRKKFIAHPELCIYCFTIFPI--------RDILFKAIYDKSEEKVTEIWLNEDALTELV 206
           F+++K    P++C++ FTI  I           +F+ I +K+  +    W +ED     V
Sbjct: 48  FMKEKLYTQPDMCMHKFTILSIGVTSHLNAHGGVFRRIKNKTLLEAALAWEDEDTYKNYV 107

Query: 207 FGLAPYSILWADVDYVYSTINI-EHWILLVFDINLGEVILYNSYLTYVSQKDILIALPPL 266
            G   + + WADVD++Y+ +NI EHWI+L  DIN G + +++S  +Y     ++  L PL
Sbjct: 108 IG--KFDVKWADVDFIYTAMNISEHWIVLAMDINRGHIFVFDSLPSYTPMTKLVNWLEPL 167

Query: 267 IYTLSSLCDFYKMRDRKPHIVAAPWSLYR 287
             T+ SL  +  +   K  +    W   R
Sbjct: 168 TVTVPSLLHYCDVDRSKSDLSTVRWKTSR 194

BLAST of ClCG01G010580 vs. NCBI nr
Match: XP_038881126.1 (uncharacterized protein LOC120072727 [Benincasa hispida])

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-09
Identity = 45/117 (38.46%), Postives = 69/117 (58.97%), Query Frame = 0

Query: 163 FTIFPI--------RDILFKAIYDKSEEKVTEIWLNEDALTELVFGLAPYSILWADVDYV 222
           FTI PI        R+ ++K I +KS      +W  E   T L + +  + I W+DVD+V
Sbjct: 6   FTILPIGVTSHLNARNGVYKHIKNKSTFHAAVVWEEE---TYLDYVMGKFDIKWSDVDFV 65

Query: 223 YSTINI-EHWILLVFDINLGEVILYNSYLTYVSQKDILIALPPLIYTLSSL---CDF 268
           Y+T NI +HW+L+ FD+N G++ +++S  +  S+K++   L PL YTL SL   CDF
Sbjct: 66  YTTTNINQHWMLIAFDLNGGQLFVFDSLPSMTSKKELESCLEPLTYTLQSLLHYCDF 119

BLAST of ClCG01G010580 vs. NCBI nr
Match: XP_038875042.1 (uncharacterized protein LOC120067568 [Benincasa hispida])

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-07
Identity = 34/106 (32.08%), Postives = 63/106 (59.43%), Query Frame = 0

Query: 189 LNEDALTELVFGLAPYSILWADVDYVYSTINI-EHWILLVFDINLGEVILYNSYLTYVSQ 248
           + ++ L + V G   + + W+DVD+VY+T NI +HW+L+ F++N  ++ +++S  +  S+
Sbjct: 1   MGDEMLPDYVMG--KFDVKWSDVDFVYTTTNIDQHWMLIAFNLNRDQLFVFDSLPSMTSK 60

Query: 249 KDILIALPPLIYTLSSLCDFYKMRDRKPHIVAAPWSLYRTDTGNIQ 294
           K +   L PL YTL SL  +  ++  KP I  + W + +  + N Q
Sbjct: 61  KKLESFLEPLTYTLPSLLHYCDLKRWKPDIKTSRWKISQPTSTNTQ 104

BLAST of ClCG01G010580 vs. NCBI nr
Match: XP_038874902.1 (uncharacterized protein LOC120067405 [Benincasa hispida])

HSP 1 Score: 60.1 bits (144), Expect = 3.9e-05
Identity = 35/110 (31.82%), Postives = 56/110 (50.91%), Query Frame = 0

Query: 188 WLNEDALTELVFGLAPYSILWADVDYVYSTINI-EHWILLVFDINLGEVILYNSYLTYVS 247
           W +ED   + V G   + I WADVD+VY+ +NI +HW++L  DI  G + +++S  +Y  
Sbjct: 51  WEDEDTYKDYVTG--KFDIKWADVDFVYTAMNISDHWMVLAMDIYRGHIFVFDSLSSYTP 110

Query: 248 QKDILIALPPLIYTLSSLCDFYKMRDRKPHIVAAPWSLYRTDTGNIQVSS 297
              ++  L  L  T+ SL  +  +   K  +    W + R    NIQ  S
Sbjct: 111 MTKLVNWLELLTVTVLSLLHYCDVDRSKSDLYTVRWKISRPMNVNIQHGS 158

BLAST of ClCG01G010580 vs. ExPASy TrEMBL
Match: A0A6J1DN69 (uncharacterized protein LOC111022140 OS=Momordica charantia OX=3673 GN=LOC111022140 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.7e-04
Identity = 32/90 (35.56%), Postives = 48/90 (53.33%), Query Frame = 0

Query: 208 WADVDYVYSTINI-EHWILLVFDINLGEVILYNSYLTYVSQKDILIALPPLIYTLSSL-- 267
           W DVD VYS + I +HW+L+  D+   E+ +Y+S   ++S   ++I L PL +T+ SL  
Sbjct: 15  WVDVDVVYSLLLIRDHWVLVAIDMTQSEIFVYDSLPGHISTSKLMIDLRPLSHTIPSLLY 74

Query: 268 -CDFYKMRDRKPHIVAAPWSLYRTDTGNIQ 294
            C      D K  +   PW +YR  T   Q
Sbjct: 75  ACGLMDTADCK--LRKTPWHVYRPTTDTRQ 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038902498.15.5e-1533.33uncharacterized protein LOC120089158 [Benincasa hispida][more]
XP_038899753.11.8e-1029.53uncharacterized protein LOC120086987 [Benincasa hispida] >XP_038899754.1 unchara... [more]
XP_038881126.11.5e-0938.46uncharacterized protein LOC120072727 [Benincasa hispida][more]
XP_038875042.11.1e-0732.08uncharacterized protein LOC120067568 [Benincasa hispida][more]
XP_038874902.13.9e-0531.82uncharacterized protein LOC120067405 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DN694.7e-0435.56uncharacterized protein LOC111022140 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G010580.1ClCG01G010580.1mRNA