ClCG01G009880 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G009880
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr01: 14215686 .. 14216453 (+)
RNA-Seq ExpressionClCG01G009880
SyntenyClCG01G009880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTATTTTGGTGATGTTGAATCCTCCCTGTAACTGTGGGTCTAAAGCACGTGCATCTGTAGTTAAGCATGTGCTTTGTTCACTGATTAAGGCAGGAATTAGACTGTCTTTGTTGGCTGGTGCCTTAACAGGTAAGGGTCCTACCAAACTCTTGGCCCACTCCAGCCATTTGCTCTGTTGACTGAGCTAGCTAAGCTTACTATTTTATTCTCTCAATCCCTTTTCTTCTTCTTTATACATAATGATGTTATCCAATTTGAAGATAATATCTTTCTTTATTTTGGAAGCAGTAAACAAATTACTGTTTCCTATGTTCTTAGCTATGATGGATTTGACTTGACCTAATATTATTAGTCTACTGGTGGAGTGGTGAGAATCAAATAGATGATCAGAACTTTTGGGCAAATTATGGGTTTCCTTTTTCCCTGCCTAACCCTTTTGTATCCTAGCTGGTTTCATGATGAAATTAGTGACCAGTGCAGTATCTAATCATGAAAGCTGTACAAATCTGTGAGAGGGGGCCTTGTATCTTATATTTAAGATTTAAAGAACAAATAGCAGAAAGATTATTAGCCTCCCCGGTCTAATCAACCAGCCTTAAGGAGATGGTTTACTAACGTTTTAGGACAACGACATTCTTAACGTTGAAGCAAGAACTAAGCAGATGGTGGATACTTCTTCCCTGCTGTTTTATCAACAGGATATCCCAGAGAAGAGATGCACATTAATGGCTCACGGAGCTAAGTTGGGGGTTTATGTTCCCTAA

mRNA sequence

ATGCCTATTTTGGTGATGTTGAATCCTCCCTGTAACTGTGGGTCTAAAGCACGTGCATCTGTAGTTAAGCATGTGCTTTGTTCACTGATTAAGGCAGGAATTAGACTGTCTTTGTTGGCTGGTGCCTTAACAGGTAAGGTCTACTGGTGGAGTGGTGAGAATCAAATAGATGATCAGAACTTTTGGGCAAATTATGGGTTTCCTTTTTCCCTGCCTAACCCTTTTGACAACGACATTCTTAACGTTGAAGCAAGAACTAAGCAGATGGTGGATACTTCTTCCCTGCTGTTTTATCAACAGGATATCCCAGAGAAGAGATGCACATTAATGGCTCACGGAGCTAAGTTGGGGGTTTATGTTCCCTAA

Coding sequence (CDS)

ATGCCTATTTTGGTGATGTTGAATCCTCCCTGTAACTGTGGGTCTAAAGCACGTGCATCTGTAGTTAAGCATGTGCTTTGTTCACTGATTAAGGCAGGAATTAGACTGTCTTTGTTGGCTGGTGCCTTAACAGGTAAGGTCTACTGGTGGAGTGGTGAGAATCAAATAGATGATCAGAACTTTTGGGCAAATTATGGGTTTCCTTTTTCCCTGCCTAACCCTTTTGACAACGACATTCTTAACGTTGAAGCAAGAACTAAGCAGATGGTGGATACTTCTTCCCTGCTGTTTTATCAACAGGATATCCCAGAGAAGAGATGCACATTAATGGCTCACGGAGCTAAGTTGGGGGTTTATGTTCCCTAA

Protein sequence

MPILVMLNPPCNCGSKARASVVKHVLCSLIKAGIRLSLLAGALTGKVYWWSGENQIDDQNFWANYGFPFSLPNPFDNDILNVEARTKQMVDTSSLLFYQQDIPEKRCTLMAHGAKLGVYVP
Homology
[Close]
BLAST of ClCG01G009880 vs. NCBI nr
Match: KGN66828.1 (hypothetical protein Csa_006838 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-09
Identity = 36/39 (92.31%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 6  MLNPPCNCGSKARASVVKHVLCSLIKAGIRLSLLAGALT 45
          MLNPPCNCGSK RASVVKHVLCSLIKA IRL LLAGALT
Sbjct: 1  MLNPPCNCGSKPRASVVKHVLCSLIKARIRLYLLAGALT 39

[Close]
BLAST of ClCG01G009880 vs. ExPASy TrEMBL
Match: A0A0A0LYG4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699570 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.5e-10
Identity = 36/39 (92.31%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 6  MLNPPCNCGSKARASVVKHVLCSLIKAGIRLSLLAGALT 45
          MLNPPCNCGSK RASVVKHVLCSLIKA IRL LLAGALT
Sbjct: 1  MLNPPCNCGSKPRASVVKHVLCSLIKARIRLYLLAGALT 39

The following BLAST results are available for this feature:
BLAST of ClCG01G009880 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66828.11.8e-0992.31hypothetical protein Csa_006838 [Cucumis sativus][more]
BLAST of ClCG01G009880 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG01G009880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYG48.5e-1092.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G699570 PE=4 SV=1[more]
BLAST of ClCG01G009880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G009880.2ClCG01G009880.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane