ClCG01G009600 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G009600
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
LocationCG_Chr01: 13449676 .. 13450550 (+)
RNA-Seq ExpressionClCG01G009600
SyntenyClCG01G009600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACTACAGTGCCAACCTCGACTAAAACTCCAGCTGTTATCTAGGATTTTTCGGCCTCCGATTTCGACAAATGCTCTTCTAAATCCAGTGCTCTCGACTCCATTGCAAAATGTTTATCCTCCTTTTCGACTTGCTACTCCACCTTTCCAACAATTGGTACAATATAATCCTCCATTTTATAACCCACCACCACCTTTTCAGCCTTACCAGTAACATCCCTTTTTTCAACGACCTAATTTCCCTCCTCAACAATTTTATCCCTAATCTCAGCCTCCATTTCATGCCACATTTCAACCTACTCTTCCCCAACCTCTATCAGTCAAGCTAAATGATACAAACTTTCTTTTGGGAAAGAATCAACTTCTGAATGCGGTTATGGCAAATGGGCTTGAAGGTTTTCTTTATGAAACTATTATGTGTCCTCAATTTCTGAATCACGCTCAGACTCAGTTAAATCCAAATTACACTACTTGGCACAGGTATAATCGTTACATAATGTGTTGGCAATATTCCTCTCTATCTAAAGAGTAAAATGGGTGAGATAGTTTCTCTAAACACTACTTTTGATATATGGAATGCTCTTAGCCGTTCATATGATTCTAAGACTACATCACGAATAATGGGCCTTAAAACTCAACTTCATAAAATTAAAAAGGATAGGTTATCTGTATCTCAATATCTATCTCAGATTAAGGATGTTGCTGATAAATTTTACTATTGGTGAACCAATTTCTTATAGAGGAGATCACTTAGCTCATATTCTAGATGGATTGAGTAGTGAATACAATGCTTTTGTTACATCTATTCAGAATAGAACTGATAACCCATCTTTAGAAGACGTAAGGAGTTTGTTACTTGCTTATGAGGCTTGA

mRNA sequence

ATGTTACTACAGTGCCAACCTCGACTAAAACTCCAGCTGTTATCTAGGATTTTTCGGCCTCCGATTTCGACAAATGCTCTTCTAAATCCAGTGCTCTCGACTCCATTGCAAAATGTTTATCCTCCTTTTCGACTTGCTACTCCACCTTTCCAACAATTGCCTCCATTTCATGCCACATTTCAACCTACTCTTCCCCAACCTCTATCAGTCAAGCTAAATGATACAAACTTTCTTTTGGGAAAGAATCAACTTCTGAATGCGGTTATGGCAAATGGGCTTGAAGGTTTTCTTTATGAAACTATTATGTGTCCTCAATTTCTGAATCACGCTCAGACTCAGTTAAATCCAAATTACACTACTTGGCACAGATTAAGGATGTTGCTGATAAATTTTACTATTGGTGAACCAATTTCTTATAGAGGAGATCACTTAGCTCATATTCTAGATGGATTGAGTAGTGAATACAATGCTTTTGTTACATCTATTCAGAATAGAACTGATAACCCATCTTTAGAAGACGTAAGGAGTTTGTTACTTGCTTATGAGGCTTGA

Coding sequence (CDS)

ATGTTACTACAGTGCCAACCTCGACTAAAACTCCAGCTGTTATCTAGGATTTTTCGGCCTCCGATTTCGACAAATGCTCTTCTAAATCCAGTGCTCTCGACTCCATTGCAAAATGTTTATCCTCCTTTTCGACTTGCTACTCCACCTTTCCAACAATTGCCTCCATTTCATGCCACATTTCAACCTACTCTTCCCCAACCTCTATCAGTCAAGCTAAATGATACAAACTTTCTTTTGGGAAAGAATCAACTTCTGAATGCGGTTATGGCAAATGGGCTTGAAGGTTTTCTTTATGAAACTATTATGTGTCCTCAATTTCTGAATCACGCTCAGACTCAGTTAAATCCAAATTACACTACTTGGCACAGATTAAGGATGTTGCTGATAAATTTTACTATTGGTGAACCAATTTCTTATAGAGGAGATCACTTAGCTCATATTCTAGATGGATTGAGTAGTGAATACAATGCTTTTGTTACATCTATTCAGAATAGAACTGATAACCCATCTTTAGAAGACGTAAGGAGTTTGTTACTTGCTTATGAGGCTTGA

Protein sequence

MLLQCQPRLKLQLLSRIFRPPISTNALLNPVLSTPLQNVYPPFRLATPPFQQLPPFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIMCPQFLNHAQTQLNPNYTTWHRLRMLLINFTIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLAYEA
Homology
BLAST of ClCG01G009600 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-31
Identity = 99/217 (45.62%), Postives = 110/217 (50.69%), Query Frame = 0

Query: 40  YPPFRLATPPFQQLP--PFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFL 99
           +PP    TP F   P  PF A   PTLPQPL+VKLND NFLL KNQLLNAV+ANGL G+L
Sbjct: 3   FPP---PTPNFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRGYL 62

Query: 100 YETIM-CPQFLNHAQTQLNPNYTTWHRLRMLLINF------------------------- 159
             TIM  PQFL+H Q Q NP Y  W R   LL+ +                         
Sbjct: 63  DGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIWSS 122

Query: 160 ---------------------------------------------TIGEPISYRGDHLAH 184
                                                         +GEP+SYR DHLAH
Sbjct: 123 LTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYR-DHLAH 182

BLAST of ClCG01G009600 vs. NCBI nr
Match: GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa])

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-16
Identity = 72/235 (30.64%), Postives = 105/235 (44.68%), Query Frame = 0

Query: 20  PPISTNALLNPVLSTPLQNVYPPFRLATPPFQQLPPFHATFQPTLPQPLSVKLNDTNFLL 79
           PP       NP+ S+ + N  P   L T P   +        P++ QPL+VKL+D N+++
Sbjct: 12  PPAPPPPTSNPLPSSSIPNPNPQI-LNTSPLPNM--------PSINQPLAVKLDDHNYII 71

Query: 80  GKNQLLNAVMANGLEGFLYETIMC-PQFLNHAQTQLNPNYTTWHRLRMLLINF------- 139
            K QLLN V+ANGLE FL  + +C P+FL+  Q Q NP + +W R   L++++       
Sbjct: 72  WKEQLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINE 131

Query: 140 ------------------------------------------------------------ 184
                                                                       
Sbjct: 132 SMLGQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCN 191

BLAST of ClCG01G009600 vs. NCBI nr
Match: RVX04814.1 (hypothetical protein CK203_024917 [Vitis vinifera])

HSP 1 Score: 96.3 bits (238), Expect = 2.9e-16
Identity = 52/123 (42.28%), Postives = 75/123 (60.98%), Query Frame = 0

Query: 62  PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLY-ETIMCPQFLNHAQTQLNPNYTT 121
           P+L QPLS+KL++TN LL  NQL+N ++ANGLE F+  +    P++L+ A+ Q+NP +  
Sbjct: 34  PSLSQPLSIKLDETNLLLWNNQLINVIIANGLEDFINPDQSNPPKYLDAARRQVNPKFVQ 93

Query: 122 WHRLRMLLINFTIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLA 181
           W RL                 + L  I +GL  +Y++FVTSI NR D PS ++V SLL  
Sbjct: 94  WERLNR---------------NKLTRIPEGLPEKYDSFVTSIHNRYDRPSFQEVHSLLHP 141

Query: 182 YEA 184
           YE+
Sbjct: 154 YES 141

BLAST of ClCG01G009600 vs. NCBI nr
Match: RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 95.1 bits (235), Expect = 6.6e-16
Identity = 65/192 (33.85%), Postives = 89/192 (46.35%), Query Frame = 0

Query: 62  PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFL-YETIMCPQFLNHAQTQLNPNYTT 121
           P+L Q LS+KL++TN LL K+QLLN ++ANGLE F+  +    P++L+ A  Q+NP +  
Sbjct: 34  PSLSQSLSIKLDETNLLLRKSQLLNVIIANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQ 93

Query: 122 WHRLRMLLINF------------------------------------------------- 181
           W RL  L++++                                                 
Sbjct: 94  WDRLNQLVMSWIYSSLTPGMVGQIVEYSTARDIWASLNDEYESPSIATVMSLNSQLQRIK 153

Query: 182 ---------------------TIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPS 183
                                TIGEP+SYR D L  IL+GL  EY+ FVTSI NR+D PS
Sbjct: 154 KIDIPLSEYLSRLKFVFDEFATIGEPLSYR-DKLTRILEGLPEEYDNFVTSIHNRSDRPS 213

BLAST of ClCG01G009600 vs. NCBI nr
Match: PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale])

HSP 1 Score: 89.0 bits (219), Expect = 4.7e-14
Identity = 67/228 (29.39%), Postives = 96/228 (42.11%), Query Frame = 0

Query: 29  NPVLSTP---LQNVYPPFRLATPPFQQLPPFHATFQPTLPQPLSVKLNDTNFLLGKNQLL 88
           NP +  P   + NV      A PP   LP       P++ QP ++KL+  N+L+ KNQLL
Sbjct: 15  NPTIQMPPTNIPNVQDQIIGAQPPLPPLP-----ILPSMNQPFTIKLDADNYLIWKNQLL 74

Query: 89  NAVMANGLEGFLYETIMC-PQFLNHAQTQLNPNYTTWHRLRMLLINF------------- 148
           N ++ANGLE F+  +  C P+F + A+  +N  Y  W R   L++++             
Sbjct: 75  NVIIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQGVMGQI 134

Query: 149 ---------------------------------------------------------TIG 183
                                                                     +G
Sbjct: 135 VGYASAFEIWEALNQIYTSSSLAKITELRAKLQNLRKDGLTAIEYIQKHKNICNTLAAVG 194

BLAST of ClCG01G009600 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 9.2e-32
Identity = 99/217 (45.62%), Postives = 110/217 (50.69%), Query Frame = 0

Query: 40  YPPFRLATPPFQQLP--PFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFL 99
           +PP    TP F   P  PF A   PTLPQPL+VKLND NFLL KNQLLNAV+ANGL G+L
Sbjct: 3   FPP---PTPNFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRGYL 62

Query: 100 YETIM-CPQFLNHAQTQLNPNYTTWHRLRMLLINF------------------------- 159
             TIM  PQFL+H Q Q NP Y  W R   LL+ +                         
Sbjct: 63  DGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIWSS 122

Query: 160 ---------------------------------------------TIGEPISYRGDHLAH 184
                                                         +GEP+SYR DHLAH
Sbjct: 123 LTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYR-DHLAH 182

BLAST of ClCG01G009600 vs. ExPASy TrEMBL
Match: A0A803NL56 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-17
Identity = 70/241 (29.05%), Postives = 108/241 (44.81%), Query Frame = 0

Query: 20  PPISTNALLNPVLSTPLQNVYPPFRLATPPFQ------QLPPFHATFQPTLPQPLSVKLN 79
           P +    + NP+ +  + N   P   A PP         LPP  ++F     Q +SVKL+
Sbjct: 11  PQMEDENIQNPIQNPTITNTQNPNTTAAPPISASSSSPSLPPNFSSFN----QTISVKLD 70

Query: 80  DTNFLLGKNQLLNAVMANGLEGFLYETIMC-PQFLNHAQTQLNPNYTTWHRLRMLLINF- 139
           DTN+L+ + Q+ N ++ANGLEG++  T+ C  QF N   +Q++P +TTWHR   LL+++ 
Sbjct: 71  DTNYLVWRMQMQNIIIANGLEGYIDGTVACSAQFPNSTSSQVDPAFTTWHRYNQLLMSWL 130

Query: 140 ------------------------------------------------------------ 184
                                                                       
Sbjct: 131 YASLSDSMLGQIVGFTTATEIWVSLERTYSATSFARSFDFRMALQNLKKDRLNASAYLQK 190

BLAST of ClCG01G009600 vs. ExPASy TrEMBL
Match: A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 72/235 (30.64%), Postives = 105/235 (44.68%), Query Frame = 0

Query: 20  PPISTNALLNPVLSTPLQNVYPPFRLATPPFQQLPPFHATFQPTLPQPLSVKLNDTNFLL 79
           PP       NP+ S+ + N  P   L T P   +        P++ QPL+VKL+D N+++
Sbjct: 12  PPAPPPPTSNPLPSSSIPNPNPQI-LNTSPLPNM--------PSINQPLAVKLDDHNYII 71

Query: 80  GKNQLLNAVMANGLEGFLYETIMC-PQFLNHAQTQLNPNYTTWHRLRMLLINF------- 139
            K QLLN V+ANGLE FL  + +C P+FL+  Q Q NP + +W R   L++++       
Sbjct: 72  WKEQLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINE 131

Query: 140 ------------------------------------------------------------ 184
                                                                       
Sbjct: 132 SMLGQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCN 191

BLAST of ClCG01G009600 vs. ExPASy TrEMBL
Match: A0A438J785 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_024917 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 52/123 (42.28%), Postives = 75/123 (60.98%), Query Frame = 0

Query: 62  PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLY-ETIMCPQFLNHAQTQLNPNYTT 121
           P+L QPLS+KL++TN LL  NQL+N ++ANGLE F+  +    P++L+ A+ Q+NP +  
Sbjct: 34  PSLSQPLSIKLDETNLLLWNNQLINVIIANGLEDFINPDQSNPPKYLDAARRQVNPKFVQ 93

Query: 122 WHRLRMLLINFTIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLA 181
           W RL                 + L  I +GL  +Y++FVTSI NR D PS ++V SLL  
Sbjct: 94  WERLNR---------------NKLTRIPEGLPEKYDSFVTSIHNRYDRPSFQEVHSLLHP 141

Query: 182 YEA 184
           YE+
Sbjct: 154 YES 141

BLAST of ClCG01G009600 vs. ExPASy TrEMBL
Match: A0A438GC62 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_210 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.2e-16
Identity = 65/192 (33.85%), Postives = 89/192 (46.35%), Query Frame = 0

Query: 62  PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFL-YETIMCPQFLNHAQTQLNPNYTT 121
           P+L Q LS+KL++TN LL K+QLLN ++ANGLE F+  +    P++L+ A  Q+NP +  
Sbjct: 34  PSLSQSLSIKLDETNLLLRKSQLLNVIIANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQ 93

Query: 122 WHRLRMLLINF------------------------------------------------- 181
           W RL  L++++                                                 
Sbjct: 94  WDRLNQLVMSWIYSSLTPGMVGQIVEYSTARDIWASLNDEYESPSIATVMSLNSQLQRIK 153

Query: 182 ---------------------TIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPS 183
                                TIGEP+SYR D L  IL+GL  EY+ FVTSI NR+D PS
Sbjct: 154 KIDIPLSEYLSRLKFVFDEFATIGEPLSYR-DKLTRILEGLPEEYDNFVTSIHNRSDRPS 213

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155181.11.9e-3145.62uncharacterized protein LOC111022315 [Momordica charantia][more]
GFY85402.12.3e-1630.64hypothetical protein Acr_04g0001400 [Actinidia rufa][more]
RVX04814.12.9e-1642.28hypothetical protein CK203_024917 [Vitis vinifera][more]
RVW69807.16.6e-1633.85Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
PON47862.14.7e-1429.39hypothetical protein TorRG33x02_321990 [Trema orientale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DQX79.2e-3245.62uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A803NL561.7e-1729.05Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7J0EGI51.1e-1630.64Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1[more]
A0A438J7851.4e-1642.28Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_024917 PE=4 SV=1[more]
A0A438GC623.2e-1633.85Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G009600.1ClCG01G009600.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding