Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACTACAGTGCCAACCTCGACTAAAACTCCAGCTGTTATCTAGGATTTTTCGGCCTCCGATTTCGACAAATGCTCTTCTAAATCCAGTGCTCTCGACTCCATTGCAAAATGTTTATCCTCCTTTTCGACTTGCTACTCCACCTTTCCAACAATTGGTACAATATAATCCTCCATTTTATAACCCACCACCACCTTTTCAGCCTTACCAGTAACATCCCTTTTTTCAACGACCTAATTTCCCTCCTCAACAATTTTATCCCTAATCTCAGCCTCCATTTCATGCCACATTTCAACCTACTCTTCCCCAACCTCTATCAGTCAAGCTAAATGATACAAACTTTCTTTTGGGAAAGAATCAACTTCTGAATGCGGTTATGGCAAATGGGCTTGAAGGTTTTCTTTATGAAACTATTATGTGTCCTCAATTTCTGAATCACGCTCAGACTCAGTTAAATCCAAATTACACTACTTGGCACAGGTATAATCGTTACATAATGTGTTGGCAATATTCCTCTCTATCTAAAGAGTAAAATGGGTGAGATAGTTTCTCTAAACACTACTTTTGATATATGGAATGCTCTTAGCCGTTCATATGATTCTAAGACTACATCACGAATAATGGGCCTTAAAACTCAACTTCATAAAATTAAAAAGGATAGGTTATCTGTATCTCAATATCTATCTCAGATTAAGGATGTTGCTGATAAATTTTACTATTGGTGAACCAATTTCTTATAGAGGAGATCACTTAGCTCATATTCTAGATGGATTGAGTAGTGAATACAATGCTTTTGTTACATCTATTCAGAATAGAACTGATAACCCATCTTTAGAAGACGTAAGGAGTTTGTTACTTGCTTATGAGGCTTGA
mRNA sequence
ATGTTACTACAGTGCCAACCTCGACTAAAACTCCAGCTGTTATCTAGGATTTTTCGGCCTCCGATTTCGACAAATGCTCTTCTAAATCCAGTGCTCTCGACTCCATTGCAAAATGTTTATCCTCCTTTTCGACTTGCTACTCCACCTTTCCAACAATTGCCTCCATTTCATGCCACATTTCAACCTACTCTTCCCCAACCTCTATCAGTCAAGCTAAATGATACAAACTTTCTTTTGGGAAAGAATCAACTTCTGAATGCGGTTATGGCAAATGGGCTTGAAGGTTTTCTTTATGAAACTATTATGTGTCCTCAATTTCTGAATCACGCTCAGACTCAGTTAAATCCAAATTACACTACTTGGCACAGATTAAGGATGTTGCTGATAAATTTTACTATTGGTGAACCAATTTCTTATAGAGGAGATCACTTAGCTCATATTCTAGATGGATTGAGTAGTGAATACAATGCTTTTGTTACATCTATTCAGAATAGAACTGATAACCCATCTTTAGAAGACGTAAGGAGTTTGTTACTTGCTTATGAGGCTTGA
Coding sequence (CDS)
ATGTTACTACAGTGCCAACCTCGACTAAAACTCCAGCTGTTATCTAGGATTTTTCGGCCTCCGATTTCGACAAATGCTCTTCTAAATCCAGTGCTCTCGACTCCATTGCAAAATGTTTATCCTCCTTTTCGACTTGCTACTCCACCTTTCCAACAATTGCCTCCATTTCATGCCACATTTCAACCTACTCTTCCCCAACCTCTATCAGTCAAGCTAAATGATACAAACTTTCTTTTGGGAAAGAATCAACTTCTGAATGCGGTTATGGCAAATGGGCTTGAAGGTTTTCTTTATGAAACTATTATGTGTCCTCAATTTCTGAATCACGCTCAGACTCAGTTAAATCCAAATTACACTACTTGGCACAGATTAAGGATGTTGCTGATAAATTTTACTATTGGTGAACCAATTTCTTATAGAGGAGATCACTTAGCTCATATTCTAGATGGATTGAGTAGTGAATACAATGCTTTTGTTACATCTATTCAGAATAGAACTGATAACCCATCTTTAGAAGACGTAAGGAGTTTGTTACTTGCTTATGAGGCTTGA
Protein sequence
MLLQCQPRLKLQLLSRIFRPPISTNALLNPVLSTPLQNVYPPFRLATPPFQQLPPFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLYETIMCPQFLNHAQTQLNPNYTTWHRLRMLLINFTIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLAYEA
Homology
BLAST of ClCG01G009600 vs. NCBI nr
Match:
XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])
HSP 1 Score: 146.7 bits (369), Expect = 1.9e-31
Identity = 99/217 (45.62%), Postives = 110/217 (50.69%), Query Frame = 0
Query: 40 YPPFRLATPPFQQLP--PFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFL 99
+PP TP F P PF A PTLPQPL+VKLND NFLL KNQLLNAV+ANGL G+L
Sbjct: 3 FPP---PTPNFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRGYL 62
Query: 100 YETIM-CPQFLNHAQTQLNPNYTTWHRLRMLLINF------------------------- 159
TIM PQFL+H Q Q NP Y W R LL+ +
Sbjct: 63 DGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIWSS 122
Query: 160 ---------------------------------------------TIGEPISYRGDHLAH 184
+GEP+SYR DHLAH
Sbjct: 123 LTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYR-DHLAH 182
BLAST of ClCG01G009600 vs. NCBI nr
Match:
GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa])
HSP 1 Score: 96.7 bits (239), Expect = 2.3e-16
Identity = 72/235 (30.64%), Postives = 105/235 (44.68%), Query Frame = 0
Query: 20 PPISTNALLNPVLSTPLQNVYPPFRLATPPFQQLPPFHATFQPTLPQPLSVKLNDTNFLL 79
PP NP+ S+ + N P L T P + P++ QPL+VKL+D N+++
Sbjct: 12 PPAPPPPTSNPLPSSSIPNPNPQI-LNTSPLPNM--------PSINQPLAVKLDDHNYII 71
Query: 80 GKNQLLNAVMANGLEGFLYETIMC-PQFLNHAQTQLNPNYTTWHRLRMLLINF------- 139
K QLLN V+ANGLE FL + +C P+FL+ Q Q NP + +W R L++++
Sbjct: 72 WKEQLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINE 131
Query: 140 ------------------------------------------------------------ 184
Sbjct: 132 SMLGQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCN 191
BLAST of ClCG01G009600 vs. NCBI nr
Match:
RVX04814.1 (hypothetical protein CK203_024917 [Vitis vinifera])
HSP 1 Score: 96.3 bits (238), Expect = 2.9e-16
Identity = 52/123 (42.28%), Postives = 75/123 (60.98%), Query Frame = 0
Query: 62 PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLY-ETIMCPQFLNHAQTQLNPNYTT 121
P+L QPLS+KL++TN LL NQL+N ++ANGLE F+ + P++L+ A+ Q+NP +
Sbjct: 34 PSLSQPLSIKLDETNLLLWNNQLINVIIANGLEDFINPDQSNPPKYLDAARRQVNPKFVQ 93
Query: 122 WHRLRMLLINFTIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLA 181
W RL + L I +GL +Y++FVTSI NR D PS ++V SLL
Sbjct: 94 WERLNR---------------NKLTRIPEGLPEKYDSFVTSIHNRYDRPSFQEVHSLLHP 141
Query: 182 YEA 184
YE+
Sbjct: 154 YES 141
BLAST of ClCG01G009600 vs. NCBI nr
Match:
RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])
HSP 1 Score: 95.1 bits (235), Expect = 6.6e-16
Identity = 65/192 (33.85%), Postives = 89/192 (46.35%), Query Frame = 0
Query: 62 PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFL-YETIMCPQFLNHAQTQLNPNYTT 121
P+L Q LS+KL++TN LL K+QLLN ++ANGLE F+ + P++L+ A Q+NP +
Sbjct: 34 PSLSQSLSIKLDETNLLLRKSQLLNVIIANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQ 93
Query: 122 WHRLRMLLINF------------------------------------------------- 181
W RL L++++
Sbjct: 94 WDRLNQLVMSWIYSSLTPGMVGQIVEYSTARDIWASLNDEYESPSIATVMSLNSQLQRIK 153
Query: 182 ---------------------TIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPS 183
TIGEP+SYR D L IL+GL EY+ FVTSI NR+D PS
Sbjct: 154 KIDIPLSEYLSRLKFVFDEFATIGEPLSYR-DKLTRILEGLPEEYDNFVTSIHNRSDRPS 213
BLAST of ClCG01G009600 vs. NCBI nr
Match:
PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale])
HSP 1 Score: 89.0 bits (219), Expect = 4.7e-14
Identity = 67/228 (29.39%), Postives = 96/228 (42.11%), Query Frame = 0
Query: 29 NPVLSTP---LQNVYPPFRLATPPFQQLPPFHATFQPTLPQPLSVKLNDTNFLLGKNQLL 88
NP + P + NV A PP LP P++ QP ++KL+ N+L+ KNQLL
Sbjct: 15 NPTIQMPPTNIPNVQDQIIGAQPPLPPLP-----ILPSMNQPFTIKLDADNYLIWKNQLL 74
Query: 89 NAVMANGLEGFLYETIMC-PQFLNHAQTQLNPNYTTWHRLRMLLINF------------- 148
N ++ANGLE F+ + C P+F + A+ +N Y W R L++++
Sbjct: 75 NVIIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQGVMGQI 134
Query: 149 ---------------------------------------------------------TIG 183
+G
Sbjct: 135 VGYASAFEIWEALNQIYTSSSLAKITELRAKLQNLRKDGLTAIEYIQKHKNICNTLAAVG 194
BLAST of ClCG01G009600 vs. ExPASy TrEMBL
Match:
A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)
HSP 1 Score: 146.7 bits (369), Expect = 9.2e-32
Identity = 99/217 (45.62%), Postives = 110/217 (50.69%), Query Frame = 0
Query: 40 YPPFRLATPPFQQLP--PFHATFQPTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFL 99
+PP TP F P PF A PTLPQPL+VKLND NFLL KNQLLNAV+ANGL G+L
Sbjct: 3 FPP---PTPNFLAQPPNPFSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIANGLRGYL 62
Query: 100 YETIM-CPQFLNHAQTQLNPNYTTWHRLRMLLINF------------------------- 159
TIM PQFL+H Q Q NP Y W R LL+ +
Sbjct: 63 DGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLETTHDIWSS 122
Query: 160 ---------------------------------------------TIGEPISYRGDHLAH 184
+GEP+SYR DHLAH
Sbjct: 123 LTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSYR-DHLAH 182
BLAST of ClCG01G009600 vs. ExPASy TrEMBL
Match:
A0A803NL56 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 99.4 bits (246), Expect = 1.7e-17
Identity = 70/241 (29.05%), Postives = 108/241 (44.81%), Query Frame = 0
Query: 20 PPISTNALLNPVLSTPLQNVYPPFRLATPPFQ------QLPPFHATFQPTLPQPLSVKLN 79
P + + NP+ + + N P A PP LPP ++F Q +SVKL+
Sbjct: 11 PQMEDENIQNPIQNPTITNTQNPNTTAAPPISASSSSPSLPPNFSSFN----QTISVKLD 70
Query: 80 DTNFLLGKNQLLNAVMANGLEGFLYETIMC-PQFLNHAQTQLNPNYTTWHRLRMLLINF- 139
DTN+L+ + Q+ N ++ANGLEG++ T+ C QF N +Q++P +TTWHR LL+++
Sbjct: 71 DTNYLVWRMQMQNIIIANGLEGYIDGTVACSAQFPNSTSSQVDPAFTTWHRYNQLLMSWL 130
Query: 140 ------------------------------------------------------------ 184
Sbjct: 131 YASLSDSMLGQIVGFTTATEIWVSLERTYSATSFARSFDFRMALQNLKKDRLNASAYLQK 190
BLAST of ClCG01G009600 vs. ExPASy TrEMBL
Match:
A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)
HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 72/235 (30.64%), Postives = 105/235 (44.68%), Query Frame = 0
Query: 20 PPISTNALLNPVLSTPLQNVYPPFRLATPPFQQLPPFHATFQPTLPQPLSVKLNDTNFLL 79
PP NP+ S+ + N P L T P + P++ QPL+VKL+D N+++
Sbjct: 12 PPAPPPPTSNPLPSSSIPNPNPQI-LNTSPLPNM--------PSINQPLAVKLDDHNYII 71
Query: 80 GKNQLLNAVMANGLEGFLYETIMC-PQFLNHAQTQLNPNYTTWHRLRMLLINF------- 139
K QLLN V+ANGLE FL + +C P+FL+ Q Q NP + +W R L++++
Sbjct: 72 WKEQLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINE 131
Query: 140 ------------------------------------------------------------ 184
Sbjct: 132 SMLGQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCN 191
BLAST of ClCG01G009600 vs. ExPASy TrEMBL
Match:
A0A438J785 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_024917 PE=4 SV=1)
HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 52/123 (42.28%), Postives = 75/123 (60.98%), Query Frame = 0
Query: 62 PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFLY-ETIMCPQFLNHAQTQLNPNYTT 121
P+L QPLS+KL++TN LL NQL+N ++ANGLE F+ + P++L+ A+ Q+NP +
Sbjct: 34 PSLSQPLSIKLDETNLLLWNNQLINVIIANGLEDFINPDQSNPPKYLDAARRQVNPKFVQ 93
Query: 122 WHRLRMLLINFTIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPSLEDVRSLLLA 181
W RL + L I +GL +Y++FVTSI NR D PS ++V SLL
Sbjct: 94 WERLNR---------------NKLTRIPEGLPEKYDSFVTSIHNRYDRPSFQEVHSLLHP 141
Query: 182 YEA 184
YE+
Sbjct: 154 YES 141
BLAST of ClCG01G009600 vs. ExPASy TrEMBL
Match:
A0A438GC62 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_210 PE=4 SV=1)
HSP 1 Score: 95.1 bits (235), Expect = 3.2e-16
Identity = 65/192 (33.85%), Postives = 89/192 (46.35%), Query Frame = 0
Query: 62 PTLPQPLSVKLNDTNFLLGKNQLLNAVMANGLEGFL-YETIMCPQFLNHAQTQLNPNYTT 121
P+L Q LS+KL++TN LL K+QLLN ++ANGLE F+ + P++L+ A Q+NP +
Sbjct: 34 PSLSQSLSIKLDETNLLLRKSQLLNVIIANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQ 93
Query: 122 WHRLRMLLINF------------------------------------------------- 181
W RL L++++
Sbjct: 94 WDRLNQLVMSWIYSSLTPGMVGQIVEYSTARDIWASLNDEYESPSIATVMSLNSQLQRIK 153
Query: 182 ---------------------TIGEPISYRGDHLAHILDGLSSEYNAFVTSIQNRTDNPS 183
TIGEP+SYR D L IL+GL EY+ FVTSI NR+D PS
Sbjct: 154 KIDIPLSEYLSRLKFVFDEFATIGEPLSYR-DKLTRILEGLPEEYDNFVTSIHNRSDRPS 213
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022155181.1 | 1.9e-31 | 45.62 | uncharacterized protein LOC111022315 [Momordica charantia] | [more] |
GFY85402.1 | 2.3e-16 | 30.64 | hypothetical protein Acr_04g0001400 [Actinidia rufa] | [more] |
RVX04814.1 | 2.9e-16 | 42.28 | hypothetical protein CK203_024917 [Vitis vinifera] | [more] |
RVW69807.1 | 6.6e-16 | 33.85 | Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | [more] |
PON47862.1 | 4.7e-14 | 29.39 | hypothetical protein TorRG33x02_321990 [Trema orientale] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DQX7 | 9.2e-32 | 45.62 | uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A803NL56 | 1.7e-17 | 29.05 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A7J0EGI5 | 1.1e-16 | 30.64 | Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1 | [more] |
A0A438J785 | 1.4e-16 | 42.28 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_024917 PE=4 SV=1 | [more] |
A0A438GC62 | 3.2e-16 | 33.85 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... | [more] |
Match Name | E-value | Identity | Description | |