ClCG01G008940 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G008940
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionProline-rich protein HaeIII subfamily 1-like
LocationCG_Chr01: 11013367 .. 11014393 (-)
RNA-Seq ExpressionClCG01G008940
SyntenyClCG01G008940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAAATCCAAAAGAGAGTACTTGACTTCATTCCACCTTTCAACTTGGGAATACTATCAAAACCCGTTATTCATACTCCCTCGTTAATAAATGAATTGGGGGACCACATTATAAAGTAGCATATTCATTTCTCATGGGGGAAACCCAAGAAAGTACCTGACTTGGCTCCGCCTTTTAGCTTGAGAATATTATTGAAAGACGTATGTACTCTGTCGTCTGGGCTGAGTCAAAGAACTTCAAGCAATCCACTTCCCTCCTTGCATGTCCCATCCATCATTTTACATAAGGAGTTTAGGATCAACATTGGAATATTACCAAAAGGTGTGCAAATTTCTTCGTTTGGGTCGAGTGACAGAACCTCAGATTATCCACCACCTCCATCACGTGCTCCTTCCATTATTTGAAAGAAAAAATCTTAATAAGTTTAATTTTTGGATGTATCCTAGAGCACCTATTCCACTCTTTACTGGAACAGGAAAGGTACCATTATGAGTACTTAATCAACCCTAGTTTTGTCGTTATCTCACTCTTTTGAGGACTCATTTTAATTGCTCCATCATCTTCATTTTTGTGGAACAATTTAAACATTTATTGTACATTGATTTCACCATAAAAGTGCTATTTTTCCTAGCTTAATTCAAGATTGTTTGTTGATTTTGTCATGTTATTCCTTGAATTTTAGGTTTTGAGCATTAAGAGGTAGAGTAGACCATTGAAGTCAAAACAAGACAAAAATGAACCAAAACGGAGCTCGAAAGCATTAACCATGCAGAGAGAGAAGAAAAATGACCAAAATGCCCTTGTGGAGCGTTGCTAGTGTGTGCCTTGCACTGTGCTCTACATTATTAACCGAAGAGCAAAAATTTCATAGAGCGTTACGATGTTGTAGGGGAGTGCAGCAACACTCCGGAGATTGATGAGAAATGGCAAAGCGCACTCGCACGCAAGAGCGCAGCGCACAACGTCGTTACACTCAAGATCGGCGCTACAACTTATATGGGCAACACTGTCCCCTCGATATAA

mRNA sequence

ATGGGGAAAATCCAAAAGAGAGTACTTGACTTCATTCCACCTTTCAACTTGGGAATACTATCAAAACCCGTTATTCATACTCCCTCGTTAATAAATGAATTGGGGGACCACATTATAAACTTGAGAATATTATTGAAAGACGTATGTACTCTGTCGTCTGGGCTGAGTCAAAGAACTTCAAGCAATCCACTTCCCTCCTTGCATGTCCCATCCATCATTTTACATAAGGAGTTTAGGATCAACATTGGAATATTACCAAAAGGTGTGCAAATTTCTTCGTTTGGGTCGAGTGACAGAACCTCAGATTATCCACCACCTCCATCACGGGAGTGCAGCAACACTCCGGAGATTGATGAGAAATGGCAAAGCGCACTCGCACGCAAGAGCGCAGCGCACAACGTCGTTACACTCAAGATCGGCGCTACAACTTATATGGGCAACACTGTCCCCTCGATATAA

Coding sequence (CDS)

ATGGGGAAAATCCAAAAGAGAGTACTTGACTTCATTCCACCTTTCAACTTGGGAATACTATCAAAACCCGTTATTCATACTCCCTCGTTAATAAATGAATTGGGGGACCACATTATAAACTTGAGAATATTATTGAAAGACGTATGTACTCTGTCGTCTGGGCTGAGTCAAAGAACTTCAAGCAATCCACTTCCCTCCTTGCATGTCCCATCCATCATTTTACATAAGGAGTTTAGGATCAACATTGGAATATTACCAAAAGGTGTGCAAATTTCTTCGTTTGGGTCGAGTGACAGAACCTCAGATTATCCACCACCTCCATCACGGGAGTGCAGCAACACTCCGGAGATTGATGAGAAATGGCAAAGCGCACTCGCACGCAAGAGCGCAGCGCACAACGTCGTTACACTCAAGATCGGCGCTACAACTTATATGGGCAACACTGTCCCCTCGATATAA

Protein sequence

MGKIQKRVLDFIPPFNLGILSKPVIHTPSLINELGDHIINLRILLKDVCTLSSGLSQRTSSNPLPSLHVPSIILHKEFRINIGILPKGVQISSFGSSDRTSDYPPPPSRECSNTPEIDEKWQSALARKSAAHNVVTLKIGATTYMGNTVPSI
Homology
BLAST of ClCG01G008940 vs. NCBI nr
Match: XP_038882352.1 (uncharacterized protein LOC120073615 [Benincasa hispida])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-11
Identity = 52/120 (43.33%), Postives = 64/120 (53.33%), Query Frame = 0

Query: 6   KRVLDFIPPFNLGILSKPVIHTPSLINELGD-------HI----------INLRILLKDV 65
           KR+ D  PPFNLGILSK     PS +++          H+          IN R+L K  
Sbjct: 67  KRIPDLAPPFNLGILSKEERVPPSGLSQSTSDNPPPPPHVISIILHKESRINFRVLSKGN 126

Query: 66  CTLSSGLSQRTSSNPLPSLHVPSIILHKEFRINIGILPKGVQISSFGSSDRTSDYPPPPS 109
               SG SQRTS +P P  H  S+ILHK+  IN GILPK + I   G S R S+YP PP+
Sbjct: 127 RIPPSGPSQRTSESPPPPPHALSVILHKKPGINFGILPKSMHIPPSGPSKRFSNYPSPPT 186

BLAST of ClCG01G008940 vs. NCBI nr
Match: KAA0040932.1 (proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK10605.1 proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-11
Identity = 52/103 (50.49%), Postives = 58/103 (56.31%), Query Frame = 0

Query: 6   KRVLDFIPPFNLGILSKPVIHTPSLINELGDHIINLRILLKDVCTLSSGLSQRTSSNPLP 65
           K++ D  PPF+LGILSK  I TP                        SGLSQ TS+NP P
Sbjct: 66  KKIPDLAPPFSLGILSKG-IRTP-----------------------PSGLSQGTSNNP-P 125

Query: 66  SLHVPSIILHKEFRINIGILPKGVQISSFGSSDRTSDYPPPPS 109
           S HV  IILHKE  +N GILPKGV+I   G S RTSD PPP S
Sbjct: 126 SPHVAPIILHKESMVNFGILPKGVRIPPSGPSRRTSDPPPPLS 143

BLAST of ClCG01G008940 vs. NCBI nr
Match: KAA0038012.1 (hypothetical protein E6C27_scaffold36G002040 [Cucumis melo var. makuwa] >TYK02206.1 hypothetical protein E5676_scaffold2454G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 9.0e-11
Identity = 54/119 (45.38%), Postives = 60/119 (50.42%), Query Frame = 0

Query: 6   KRVLDFIPPFNLGILSKPVIHTPSLINELGDHI------------------------INL 65
           KRV D  PPF+LGIL+   + TP   NELG  I                         +L
Sbjct: 115 KRVPDLAPPFSLGILNNH-LRTPPSENELGHSITKHPKSHIRFSWPKPKRVPDLAPPFSL 174

Query: 66  RILLKDVCTLSSGLSQRTSSNPLPSLHVPSIILHKEFRINIGILPKGVQISSFGSSDRT 101
            IL KDV T  SG SQRT  NP    HV  IILHK+ RI  GILPKGV + S G S RT
Sbjct: 175 GILSKDVRTPPSGSSQRTLDNPSLPPHVVPIILHKKSRIEFGILPKGVHVPSSGPSVRT 232

BLAST of ClCG01G008940 vs. NCBI nr
Match: KAA0037987.1 (hypothetical protein E6C27_scaffold36G001740 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-10
Identity = 53/119 (44.54%), Postives = 63/119 (52.94%), Query Frame = 0

Query: 6   KRVLDFIPPFNLGILSKPVIHTPSLINELG--------DHI----------------INL 65
           KRV D  PPF+LGIL+  + + PS  NELG        +HI                 +L
Sbjct: 122 KRVPDLAPPFSLGILNNHLRNPPS-ENELGHSITKHPKNHIRFSWPKPKRVPDLAPPFSL 181

Query: 66  RILLKDVCTLSSGLSQRTSSNPLPSLHVPSIILHKEFRINIGILPKGVQISSFGSSDRT 101
            ILLKDV T   G SQRT  NP P  H   IILHK+ +I  GILPKGV++   G S RT
Sbjct: 182 GILLKDVRTPPFGSSQRTLDNPSPPPHAVPIILHKKSKIKFGILPKGVRVPPSGPSVRT 239

BLAST of ClCG01G008940 vs. NCBI nr
Match: XP_031744003.1 (abl interactor homolog [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-09
Identity = 50/96 (52.08%), Postives = 56/96 (58.33%), Query Frame = 0

Query: 12  IPPFNLGILSKPVIHTPSLINELGDHIINLRILLKDVCTLSSGLSQRTSSNPLPSLHVPS 71
           IPPF     S      PS++    +  +N  ILLK V T SSG SQR S +P PS   PS
Sbjct: 76  IPPFGPSQRSSDSTPPPSIVLH-KESRMNFGILLKGVRTHSSGSSQRFSDSP-PS-PPPS 135

Query: 72  IILHKEFRINIGILPKGVQISSFGSSDRTSDYPPPP 108
           I+LHKE RI  GILPKGV   S G S R SD PPPP
Sbjct: 136 IVLHKEPRIKFGILPKGVPTHSSGPSRRFSDSPPPP 168

BLAST of ClCG01G008940 vs. ExPASy TrEMBL
Match: A0A5D3CGG1 (Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00020 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.8e-12
Identity = 52/103 (50.49%), Postives = 58/103 (56.31%), Query Frame = 0

Query: 6   KRVLDFIPPFNLGILSKPVIHTPSLINELGDHIINLRILLKDVCTLSSGLSQRTSSNPLP 65
           K++ D  PPF+LGILSK  I TP                        SGLSQ TS+NP P
Sbjct: 66  KKIPDLAPPFSLGILSKG-IRTP-----------------------PSGLSQGTSNNP-P 125

Query: 66  SLHVPSIILHKEFRINIGILPKGVQISSFGSSDRTSDYPPPPS 109
           S HV  IILHKE  +N GILPKGV+I   G S RTSD PPP S
Sbjct: 126 SPHVAPIILHKESMVNFGILPKGVRIPPSGPSRRTSDPPPPLS 143

BLAST of ClCG01G008940 vs. ExPASy TrEMBL
Match: A0A5D3BVE5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2454G00110 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.4e-11
Identity = 54/119 (45.38%), Postives = 60/119 (50.42%), Query Frame = 0

Query: 6   KRVLDFIPPFNLGILSKPVIHTPSLINELGDHI------------------------INL 65
           KRV D  PPF+LGIL+   + TP   NELG  I                         +L
Sbjct: 115 KRVPDLAPPFSLGILNNH-LRTPPSENELGHSITKHPKSHIRFSWPKPKRVPDLAPPFSL 174

Query: 66  RILLKDVCTLSSGLSQRTSSNPLPSLHVPSIILHKEFRINIGILPKGVQISSFGSSDRT 101
            IL KDV T  SG SQRT  NP    HV  IILHK+ RI  GILPKGV + S G S RT
Sbjct: 175 GILSKDVRTPPSGSSQRTLDNPSLPPHVVPIILHKKSRIEFGILPKGVHVPSSGPSVRT 232

BLAST of ClCG01G008940 vs. ExPASy TrEMBL
Match: A0A5A7T8R0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001740 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 9.7e-11
Identity = 53/119 (44.54%), Postives = 63/119 (52.94%), Query Frame = 0

Query: 6   KRVLDFIPPFNLGILSKPVIHTPSLINELG--------DHI----------------INL 65
           KRV D  PPF+LGIL+  + + PS  NELG        +HI                 +L
Sbjct: 122 KRVPDLAPPFSLGILNNHLRNPPS-ENELGHSITKHPKNHIRFSWPKPKRVPDLAPPFSL 181

Query: 66  RILLKDVCTLSSGLSQRTSSNPLPSLHVPSIILHKEFRINIGILPKGVQISSFGSSDRT 101
            ILLKDV T   G SQRT  NP P  H   IILHK+ +I  GILPKGV++   G S RT
Sbjct: 182 GILLKDVRTPPFGSSQRTLDNPSPPPHAVPIILHKKSKIKFGILPKGVRVPPSGPSVRT 239

BLAST of ClCG01G008940 vs. ExPASy TrEMBL
Match: A0A6J1HRH7 (actin cytoskeleton-regulatory complex protein PAN1-like OS=Cucurbita maxima OX=3661 GN=LOC111467141 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 40/74 (54.05%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 39  INLRILLKDVCTLSSGLSQRTSSNPLPSLHVPSIILHKEFRINIGILPKGVQISSFGSSD 98
           INL +L + V    SG SQRTS  P P  H  S+IL+K+ +IN G+LPKGV I   G S 
Sbjct: 280 INLGMLPRGVPIPPSGPSQRTSDYPPPPPHASSVILNKQSKINFGMLPKGVPIPPSGPSQ 339

Query: 99  RTSDYPPPPSRECS 113
           RTS YPPPP R  S
Sbjct: 340 RTSXYPPPPPRASS 353

BLAST of ClCG01G008940 vs. ExPASy TrEMBL
Match: A0A5D3BP86 (Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold109G00050 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.0e-05
Identity = 42/96 (43.75%), Postives = 48/96 (50.00%), Query Frame = 0

Query: 12  IPPFNLGILSKPVIHTPSLINELGDHIINLRILLKDVCTLSSGLSQRTSSNPLPSLHVPS 71
           IPP      S     +PS+I    +  IN  IL K      SG SQR S +PLP    PS
Sbjct: 86  IPPSGPSQRSSDSPPSPSMILP-KESRINFGILPKGSRIPPSGPSQRFSDSPLP----PS 145

Query: 72  IILHKEFRINIGILPKGVQISSFGSSDRTSDYPPPP 108
             LHK   +  G+LPKG  I   G S RTSD PPPP
Sbjct: 146 TFLHKGSNMIFGMLPKGHHIPPSGPSKRTSDNPPPP 176

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038882352.11.4e-1143.33uncharacterized protein LOC120073615 [Benincasa hispida][more]
KAA0040932.11.8e-1150.49proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK1060... [more]
KAA0038012.19.0e-1145.38hypothetical protein E6C27_scaffold36G002040 [Cucumis melo var. makuwa] >TYK0220... [more]
KAA0037987.12.0e-1044.54hypothetical protein E6C27_scaffold36G001740 [Cucumis melo var. makuwa][more]
XP_031744003.11.7e-0952.08abl interactor homolog [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CGG18.8e-1250.49Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194... [more]
A0A5D3BVE54.4e-1145.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T8R09.7e-1144.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6J1HRH71.4e-0954.05actin cytoskeleton-regulatory complex protein PAN1-like OS=Cucurbita maxima OX=3... [more]
A0A5D3BP868.0e-0543.75Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G008940.1ClCG01G008940.1mRNA