ClCG01G004970 (gene) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G004970
Type	gene
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	General transcription factor IIH subunit
Location	CG_Chr01: 5263727 .. 5267400 (+)
RNA-Seq Expression	ClCG01G004970
Synteny	ClCG01G004970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGCTCTTACTCTTTAGGGCTGAAATCATGAAATCATGGAAAGCTTAAAGTTGAAAAGAGGGTGAAAGCGCAGCAGCCTTAACAAGCCGTGGGTCACTGGGTGTTTTCCATGTCTTGGTTTTGAGGCTGAATCGCGCCGCCGCGGGTCTTGCTGTAGAGGACTCTAACACGCCGTCGTTCGTATCAGGTCAGTGGCGGTCGGGGCGCGCTGGTCTCGGTTTTCAAGGGCAGTTTCCGGCGGTTTATCTCCGCGCCGGTGTGAGTCTCGGGTTAGAGACTGTGAAGCACGCAGTGGGTTTCCCATTTTAGCAATCAAACGGTAACCTTGAGGTTGATATAAAGATTGTGGGTATATTTCAAGGTTGTTGATTTCTGTTGTGCTGGTGTTTTGGGCGTTTGAATCCGTTTTACTTCTTCATTGTCGATTCCTCATCACACCTACCTACTGTAACTCTTAGGTCCCCAAGTTGTGATTATTCTCTGTGTAGAGCTTGTTTTAGGTATTGGGGTTTCATCAATTTGATCTTGTTTCAAAACCTTCGAGCGTAGCTTCTGAAAAAGTCCTTAAATATGAACAATGGCGAAAATATGAGATTGAATGGGGAAGCCGATGAAGAAGACGATGATGACGATGCCAATGGTGGACTTGCTGCGTGGGAAAGGACTTACGCAGATGATAGGTCGTGGGAAGCCTTGCAAGAAGACGAGTCTGGACTCCTTCGCCCGATCGACAATAAGGCAATTTACCATGCTCAGTATCGAAGGCGCCTTCGCTCCCTTTCTTCCTTAGCAACCACTGCTCGAATTCAGAAGGGTCTTATTCGTTATCTCTATATCATCATTGACTTCTCTAGGGTACTCTTTTTCCTTCCATGACTCTATTACTACATTTGTTAATGTTCCGTCTGTTTGATTTATTAGGTTCTGTGTCTTTGCAATTGCTTCTAATCGTCTTTTTGAGAAAAGGGATTTGTTGTAATGTTCATCAGGTTAAATGCATAGTATCTCTGCTGAAATATTTCATAACCATCAAATTGGATTGGTAAATTTATAGTTTTGCTGTTCTTAGCTTACCCAATAGCTGTAATGTGGTCTAATATCGATGTCTTCCTACTTGTTTGTTCTCTGATTATGCTTGAAAGGGTCTGGAGAAGTATCTCCACAGTTATTCCATAGAGGATTGGTCCTCATTTAATCCAACCACTATGTAGTGAATGAAAGATGTGCTAACTTGAGTTTTGTTTAGAGCAAGTATGATTTCTGTTCATAGAAACTGTGAATGATAGTGGAGATGAAGAATTTTGAATGGATGGTGATGGAATAGAGGTTTTGCTTTTTTGATTTCTCTTATTTTGCTTGTCCCACCATGTGTAGGCAGCTACAGAAATGGATTTTCGACCAAGTCGAATGGCTGTTGTGGCAAAACATGTAGAGGCTTTTGTCAGGGAATTCTTTGACCAAAATCCACTCAGTCAGATTGGTTTGGTAACTATGAAAGATGGAGTTGCTCATTGCTTAACAGATCTTGGTGGAAGTCCTGAATCCCATGTTAAAGCATTAATGGGCAAACTGGAATGCTCAGGTGATGCATCCTTGCAGAACGGTCTGGAACTTGTCCACGGCTATCTGAATCAAATTCCATCATATGGGCATAGAGAAGTTTTAATCTTATACTCTGCTCTTAATTCTTGTGATCCTGGGGATATCATGGAGACAGTTCAGAAATGCAAAACTTCTAAAATAAGGTGTTCAGTAATTGGTCTTACTGCAGAAATTTTTATATGCAGACATCTCTGCCAAGAAACTGGTGGCTCATACTCTGTCGCATTGGATGAGGTGAGTTTAACAGAATGTGCGAATTTCCCAAAATAGAGAGAAATTGAAATGGCTATTTTTTTAGTTGGCCAGCTAATTGAACTGAGTACAGATTACAAAGGAAGCTTAACAAAGTACACAGTTATTGAAACAGAAGTTAGTAAAATTACTATAGCAAGATTTTATTTGATGTTTCTATATATGGAAGTTCTGTTTCCTAAATCTTTATGTAATACTTGCCTTTTATATACAGTCCCACTTCAAAGAGTTGCTATTGGAGCATGCACCCCCACCCCCAGCAATAGCAGACTCTGCAATGCCTAATTTAATCAAGATGGGCTTCCCACAAAGAGCAGCAGAGAGTTCTATTGCAATATGTTCATGTCACAAGGAAGCTAAAGCTGGAGGGGGCTATACTTGCCCTCGATGCAAAGCACGGGTTTGTGAGCTCCCCACAGAGTGTCGAATTTGTGGATTGACACTGATCTCCTCGCCCCATTTGGCTAGGTCATATCACCATCTCTTTCCAATTATACCATTTGATGAAGTCACTGATAAAGTACTTCATGATCCACGACATCAATCTCCAAAAGTTTGCTTTGGCTGCCAAGAAAGCCTCATGAATCCTGGTAAGAACTCAAATAAACATGATATTTGGAAGCTTTCAAATGAAACTTCTTTTTATGGCATTTGTTGTCTTCTAATAATATAATGCACATGTCTAATTAGTCAGAATTTTGTGTCAGAGGATATCTTAATATCGGATGAAGTGAAAATTAAGAAAAGATTTATCGTCTTTCCTACTGGGAGTTTGTTAATGCCCTGTGATGTTCAACTTCTGAATCAAAGAATGTTGTGTATAAGAAAACTTCCATGTTTCCTGTTCGTGCTTTGGTCATTTTTCAGTACTAATTGTGTACACCACCAGTACTGCAATCTGCTGAAACAGTGTTATCAATGGGAATCGATTTTGCCTTTTGTGTTGGGTGATTTCTTTTTATTATTCATTGTGCATATGTGATTCTGTTTAAGGCAATAGGAACTACTTGTACCTGTGACATGCAATTACGAATAAATATATGGATGATCTTTTGGCCCTTTGTAATTTGCTGATTTGAAATTTTGACCCTACAATTACTGTGTACTCATTCAAATGTGCTTTTCTAGGCACAGGTAATAGCCCAGGCATTCGTGTTTCTTGCCCAAAGTGCAAACAACACTTTTGTCTTGATTGTGATATTTATATTCACGAGAGCTTGCACAATTGTCCTGGCTGTGAGAGTTTTAGGCGTCCAAAATTGTTGACTTCTGACGAATGAACGTCTACTTTCGGATGCAACCATGTGGCCCCAACCGAATCCAAATTCAATCTTCAATCTGACCGTGACTCTGCTCTGTCTGTAATGAACTTTGTACCACTATTTATAAAGTTTCAAGCATGTCTACCAATGATGGTGAATTCAAGGCTCTCATTGTTACCGCGGAGTCGTCTTTCGTGTTTCTCGACAGCTCCTAAACCAACCTCAAAGAGATCCAAAGCTTGTGGCTTTCTGACACTTGATGGCATCGTTGAAATTGGCTAGAAGATTAATTTTTCAAGATGAAAGGCTGAAACTTACTTTCCTTCTGGGCTGCAGATGGCTGATATTACTTGGAGTGTTACCCAAAATTGACCCCCCAATGGACAATTTCCATTTTCATGAGATTTTGTAGGAACTTGATATTAATTCTTGTCTGACATTTCAGATGTATTTGACATTCATATTCTTTTAGTTAAGTTATTAAAAGAGCTTGTGCCAGAAACTTCAGTGTGCCTACTATTAACAATAAACAATTATATGTACCAATGTTGTAAATG

mRNA sequence

CTTGCTCTTACTCTTTAGGGCTGAAATCATGAAATCATGGAAAGCTTAAAGTTGAAAAGAGGGTGAAAGCGCAGCAGCCTTAACAAGCCGTGGGTCACTGGGTGTTTTCCATGTCTTGGTTTTGAGGCTGAATCGCGCCGCCGCGGGTCTTGCTGTAGAGGACTCTAACACGCCGTCGTTCGTATCAGGTCAGTGGCGGTCGGGGCGCGCTGGTCTCGGTTTTCAAGGGCAGTTTCCGGCGGTTTATCTCCGCGCCGGTGTGAGTCTCGGGTTAGAGACTGTGAAGCACGCAGTGGGTTTCCCATTTTAGCAATCAAACGGTAACCTTGAGGTTGATATAAAGATTGTGGGTATATTTCAAGGTTGTTGATTTCTGTTGTGCTGGTGTTTTGGGCGTTTGAATCCGTTTTACTTCTTCATTGTCGATTCCTCATCACACCTACCTACTGTAACTCTTAGGTCCCCAAGTTGTGATTATTCTCTGTGTAGAGCTTGTTTTAGGTATTGGGGTTTCATCAATTTGATCTTGTTTCAAAACCTTCGAGCGTAGCTTCTGAAAAAGTCCTTAAATATGAACAATGGCGAAAATATGAGATTGAATGGGGAAGCCGATGAAGAAGACGATGATGACGATGCCAATGGTGGACTTGCTGCGTGGGAAAGGACTTACGCAGATGATAGGTCGTGGGAAGCCTTGCAAGAAGACGAGTCTGGACTCCTTCGCCCGATCGACAATAAGGCAATTTACCATGCTCAGTATCGAAGGCGCCTTCGCTCCCTTTCTTCCTTAGCAACCACTGCTCGAATTCAGAAGGGTCTTATTCGTTATCTCTATATCATCATTGACTTCTCTAGGGCAGCTACAGAAATGGATTTTCGACCAAGTCGAATGGCTGTTGTGGCAAAACATGTAGAGGCTTTTGTCAGGGAATTCTTTGACCAAAATCCACTCAGTCAGATTGGTTTGGTAACTATGAAAGATGGAGTTGCTCATTGCTTAACAGATCTTGGTGGAAGTCCTGAATCCCATGTTAAAGCATTAATGGGCAAACTGGAATGCTCAGGTGATGCATCCTTGCAGAACGGTCTGGAACTTGTCCACGGCTATCTGAATCAAATTCCATCATATGGGCATAGAGAAGTTTTAATCTTATACTCTGCTCTTAATTCTTGTGATCCTGGGGATATCATGGAGACAGTTCAGAAATGCAAAACTTCTAAAATAAGGTGTTCAGTAATTGGTCTTACTGCAGAAATTTTTATATGCAGACATCTCTGCCAAGAAACTGGTGGCTCATACTCTGTCGCATTGGATGAGTCCCACTTCAAAGAGTTGCTATTGGAGCATGCACCCCCACCCCCAGCAATAGCAGACTCTGCAATGCCTAATTTAATCAAGATGGGCTTCCCACAAAGAGCAGCAGAGAGTTCTATTGCAATATGTTCATGTCACAAGGAAGCTAAAGCTGGAGGGGGCTATACTTGCCCTCGATGCAAAGCACGGGTTTGTGAGCTCCCCACAGAGTGTCGAATTTGTGGATTGACACTGATCTCCTCGCCCCATTTGGCTAGGTCATATCACCATCTCTTTCCAATTATACCATTTGATGAAGTCACTGATAAAGTACTTCATGATCCACGACATCAATCTCCAAAAGTTTGCTTTGGCTGCCAAGAAAGCCTCATGAATCCTGGCACAGGTAATAGCCCAGGCATTCGTGTTTCTTGCCCAAAGTGCAAACAACACTTTTGTCTTGATTGTGATATTTATATTCACGAGAGCTTGCACAATTGTCCTGGCTGTGAGAGTTTTAGGCGTCCAAAATTGTTGACTTCTGACGAATGAACGTCTACTTTCGGATGCAACCATGTGGCCCCAACCGAATCCAAATTCAATCTTCAATCTGACCGTGACTCTGCTCTGTCTGTAATGAACTTTGTACCACTATTTATAAAGTTTCAAGCATGTCTACCAATGATGGTGAATTCAAGGCTCTCATTGTTACCGCGGAGTCGTCTTTCGTGTTTCTCGACAGCTCCTAAACCAACCTCAAAGAGATCCAAAGCTTGTGGCTTTCTGACACTTGATGGCATCGTTGAAATTGGCTAGAAGATTAATTTTTCAAGATGAAAGGCTGAAACTTACTTTCCTTCTGGGCTGCAGATGGCTGATATTACTTGGAGTGTTACCCAAAATTGACCCCCCAATGGACAATTTCCATTTTCATGAGATTTTGTAGGAACTTGATATTAATTCTTGTCTGACATTTCAGATGTATTTGACATTCATATTCTTTTAGTTAAGTTATTAAAAGAGCTTGTGCCAGAAACTTCAGTGTGCCTACTATTAACAATAAACAATTATATGTACCAATGTTGTAAATG

Coding sequence (CDS)

ATGAACAATGGCGAAAATATGAGATTGAATGGGGAAGCCGATGAAGAAGACGATGATGACGATGCCAATGGTGGACTTGCTGCGTGGGAAAGGACTTACGCAGATGATAGGTCGTGGGAAGCCTTGCAAGAAGACGAGTCTGGACTCCTTCGCCCGATCGACAATAAGGCAATTTACCATGCTCAGTATCGAAGGCGCCTTCGCTCCCTTTCTTCCTTAGCAACCACTGCTCGAATTCAGAAGGGTCTTATTCGTTATCTCTATATCATCATTGACTTCTCTAGGGCAGCTACAGAAATGGATTTTCGACCAAGTCGAATGGCTGTTGTGGCAAAACATGTAGAGGCTTTTGTCAGGGAATTCTTTGACCAAAATCCACTCAGTCAGATTGGTTTGGTAACTATGAAAGATGGAGTTGCTCATTGCTTAACAGATCTTGGTGGAAGTCCTGAATCCCATGTTAAAGCATTAATGGGCAAACTGGAATGCTCAGGTGATGCATCCTTGCAGAACGGTCTGGAACTTGTCCACGGCTATCTGAATCAAATTCCATCATATGGGCATAGAGAAGTTTTAATCTTATACTCTGCTCTTAATTCTTGTGATCCTGGGGATATCATGGAGACAGTTCAGAAATGCAAAACTTCTAAAATAAGGTGTTCAGTAATTGGTCTTACTGCAGAAATTTTTATATGCAGACATCTCTGCCAAGAAACTGGTGGCTCATACTCTGTCGCATTGGATGAGTCCCACTTCAAAGAGTTGCTATTGGAGCATGCACCCCCACCCCCAGCAATAGCAGACTCTGCAATGCCTAATTTAATCAAGATGGGCTTCCCACAAAGAGCAGCAGAGAGTTCTATTGCAATATGTTCATGTCACAAGGAAGCTAAAGCTGGAGGGGGCTATACTTGCCCTCGATGCAAAGCACGGGTTTGTGAGCTCCCCACAGAGTGTCGAATTTGTGGATTGACACTGATCTCCTCGCCCCATTTGGCTAGGTCATATCACCATCTCTTTCCAATTATACCATTTGATGAAGTCACTGATAAAGTACTTCATGATCCACGACATCAATCTCCAAAAGTTTGCTTTGGCTGCCAAGAAAGCCTCATGAATCCTGGCACAGGTAATAGCCCAGGCATTCGTGTTTCTTGCCCAAAGTGCAAACAACACTTTTGTCTTGATTGTGATATTTATATTCACGAGAGCTTGCACAATTGTCCTGGCTGTGAGAGTTTTAGGCGTCCAAAATTGTTGACTTCTGACGAATGA

Protein sequence

MNNGENMRLNGEADEEDDDDDANGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHAQYRRRLRSLSSLATTARIQKGLIRYLYIIIDFSRAATEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTMKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHGYLNQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKAGGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVTDKVLHDPRHQSPKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLLTSDE

Homology

[Close]

BLAST of ClCG01G004970 vs. NCBI nr
Match: XP_038874496.1 (general transcription factor IIH subunit 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 863.2 bits (2229), Expect = 9.2e-247
Identity = 413/424 (97.41%), Postives = 419/424 (98.82%), Query Frame = 0


Query: 1   MNNGENMRLNGEADEEDDDDDANGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60
           MNNGEN RLNGEADEEDDDDDANGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH
Sbjct: 1   MNNGENRRLNGEADEEDDDDDANGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYIIIDFSRAATEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLRSLSSLATTARIQKGLIRYLYI+IDFSRAATEMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYIVIDFSRAATEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTMKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHGYL 180
           FFDQNPLSQIGLVT+KDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHG+L
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHGFL 180

Query: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240
           NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKAG 300
           GSYS+ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAK G
Sbjct: 241 GSYSIALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVTDKVLHDPRHQS 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEV+DKVLHDPR+Q 
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVLHDPRNQL 360

Query: 361 PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLL 420
           PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK  
Sbjct: 361 PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TSDE 425
           TSDE
Sbjct: 421 TSDE 424

[Close]

BLAST of ClCG01G004970 vs. NCBI nr
Match: KAA0055121.1 (general transcription factor IIH subunit 2 [Cucumis melo var. makuwa] >TYK20738.1 general transcription factor IIH subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 849.7 bits (2194), Expect = 1.1e-242
Identity = 408/424 (96.23%), Postives = 414/424 (97.64%), Query Frame = 0


Query: 1   MNNGENMRLNGEADEEDDDDDANGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60
           MNNGEN RLNGEADEEDDDDDAN GLAAWERTYADDRSWEALQEDESGLL PIDNKAIYH
Sbjct: 1   MNNGENRRLNGEADEEDDDDDAN-GLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYIIIDFSRAATEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLYI+IDFS+AATEMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTMKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHGYL 180
           FFDQNPLSQIGLVT+KDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVH YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180

Query: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240
           NQIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG
Sbjct: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKAG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAK G
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVTDKVLHDPRHQS 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEV+DKV HDPRHQ 
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360

Query: 361 PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLL 420
           PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFR PKL 
Sbjct: 361 PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLA 420

Query: 421 TSDE 425
           T DE
Sbjct: 421 TFDE 423

[Close]

BLAST of ClCG01G004970 vs. NCBI nr
Match: XP_004143721.1 (general transcription factor IIH subunit 2 [Cucumis sativus] >XP_031741116.1 general transcription factor IIH subunit 2 [Cucumis sativus] >KGN50372.1 hypothetical protein Csa_000481 [Cucumis sativus])

HSP 1 Score: 846.7 bits (2186), Expect = 8.9e-242
Identity = 406/424 (95.75%), Postives = 414/424 (97.64%), Query Frame = 0


Query: 1   MNNGENMRLNGEADEEDDDDDANGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60
           MNNGEN RLNGEADEEDDDDDAN GLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH
Sbjct: 1   MNNGENRRLNGEADEEDDDDDAN-GLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYIIIDFSRAATEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLYI+IDFS+AATEMDFRPSRMAVVAKHV+AFVRE
Sbjct: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVRE 120

Query: 121 FFDQNPLSQIGLVTMKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHGYL 180
           FFDQNPLSQIGLVT+KDG A+CLTDLGGSPESHVKALMGKLECSGDASLQNGLELVH YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180

Query: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240
           NQIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG
Sbjct: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKAG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAK G
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVTDKVLHDPRHQS 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEV+DKV HDPRHQ 
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360

Query: 361 PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLL 420
           PKVCFGCQESLMNP TGNSP IRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKL 
Sbjct: 361 PKVCFGCQESLMNPSTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLA 420

Query: 421 TSDE 425
           TSDE
Sbjct: 421 TSDE 423

[Close]

BLAST of ClCG01G004970 vs. NCBI nr
Match: XP_008467294.1 (PREDICTED: general transcription factor IIH subunit 2 [Cucumis melo])

HSP 1 Score: 846.7 bits (2186), Expect = 8.9e-242
Identity = 407/424 (95.99%), Postives = 413/424 (97.41%), Query Frame = 0


Query: 1   MNNGENMRLNGEADEEDDDDDANGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60
           MNNGEN RLNGEADEEDDDDDAN GLAAWERTYADDRSWEALQEDESGLL PIDNKAIYH
Sbjct: 1   MNNGENRRLNGEADEEDDDDDAN-GLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYIIIDFSRAATEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLYI+IDFS+AATEMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTMKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHGYL 180
           FFDQNPLSQIGLVT+KDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVH YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180

Query: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240
           NQIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG
Sbjct: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKAG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAK G
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVTDKVLHDPRHQS 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEV+DKV HDPRHQ 
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360

Query: 361 PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLL 420
           PKVCFGCQESLMNPGT NSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFR PKL 
Sbjct: 361 PKVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLA 420

Query: 421 TSDE 425
           T DE
Sbjct: 421 TFDE 423

[Close]

BLAST of ClCG01G004970 vs. NCBI nr
Match: XP_022949453.1 (general transcription factor IIH subunit 2 [Cucurbita moschata] >XP_023525764.1 general transcription factor IIH subunit 2 [Cucurbita pepo subsp. pepo] >KAG6607180.1 General transcription factor IIH subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 839.7 bits (2168), Expect = 1.1e-239
Identity = 399/424 (94.10%), Postives = 412/424 (97.17%), Query Frame = 0


Query: 1   MNNGENMRLNGEADEEDDDDDANGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60
           MNNGEN RLNGEA+EEDDDDDANGG+AAWERTYADDRSWEALQEDESGLLRPIDNKAI+H
Sbjct: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYIIIDFSRAATEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLRSLSSLATTARIQKGLIRYLY++IDFSRAA EMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTMKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHGYL 180
           FFDQNPLSQIGLVT+KDGVAH LTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV GYL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240
           NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKAG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAK G
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVTDKVLHDPRHQS 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEV+DK+ HDPRHQ 
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360

Query: 361 PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLL 420
           PKVCFGCQE+  NPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK  
Sbjct: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TSDE 425
           TSD+
Sbjct: 421 TSDD 424

[Close]

BLAST of ClCG01G004970 vs. ExPASy Swiss-Prot
Match: Q9ZVN9 (General transcription factor IIH subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GTF2H2 PE=1 SV=1)

HSP 1 Score: 662.5 bits (1708), Expect = 3.1e-189
Identity = 318/417 (76.26%), Postives = 355/417 (85.13%), Query Frame = 0


Query: 3   NGENMRLNGEADEEDDDDDANGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHAQ 62
           + +  R N E +EEDD+D    G+  WER Y DDRSWE LQEDESGLLRPIDN AIYHAQ
Sbjct: 2   SNQRKRSNDEREEEDDEDAE--GIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQ 61

Query: 63  YRRRLRSLSSLATTARIQKGLIRYLYIIIDFSRAATEMDFRPSRMAVVAKHVEAFVREFF 122
           YRRRLR LS+ A   RIQKGLIRYLYI+IDFSRAA EMDFRPSRMA++AKHVEAF+REFF
Sbjct: 62  YRRRLRMLSAAAAGTRIQKGLIRYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFF 121

Query: 123 DQNPLSQIGLVTMKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHGYLNQ 182
           DQNPLSQIGLV++K+GVAH LTDLGGSPE+H+KALMGKLE  GD+SLQN LELVH +LNQ
Sbjct: 122 DQNPLSQIGLVSIKNGVAHTLTDLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQ 181

Query: 183 IPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGS 242
           +PSYGHREVLILYSAL +CDPGDIMET+QKCK SK+RCSVIGL+AE+FIC+HLCQETGG 
Sbjct: 182 VPSYGHREVLILYSALCTCDPGDIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGL 241

Query: 243 YSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKAGGG 302
           YSVA+DE H K+LLLEHAPPPPAIA+ A+ NLIKMGFPQRAAE S+AICSCHKE K G G
Sbjct: 242 YSVAVDEVHLKDLLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAG 301

Query: 303 YTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVTD-KVLHDPRHQSP 362
           Y CPRCKARVC+LPTEC ICGLTL+SSPHLARSYHHLFPI PFDEV     L+D R +  
Sbjct: 302 YMCPRCKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLG 361

Query: 363 KVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK 419
           K CFGCQ+SL+  G GN P   V+C KCK +FCLDCDIYIHESLHNCPGCES  RPK
Sbjct: 362 KSCFGCQQSLI--GAGNKPVPCVTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPK 414

[Close]

BLAST of ClCG01G004970 vs. ExPASy Swiss-Prot
Match: Q2TBV5 (General transcription factor IIH subunit 2 OS=Bos taurus OX=9913 GN=GTF2H2 PE=2 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 4.3e-90
Identity = 164/396 (41.41%), Postives = 242/396 (61.11%), Query Frame = 0


Query: 29  WERTYADDRSWEALQEDESGLLRPIDNKAIYHAQYRRRLRSLSSLATTARIQKGLIRYLY 88
           WE  Y  +R+WE L+EDESG L+      ++ A+ +R            +++ G++R+LY
Sbjct: 11  WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEH------HGQVRLGMMRHLY 70

Query: 89  IIIDFSRAATEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTMKDGVAHCLTDLGG 148
           +++D SR   + D +P+R+    K +E FV E+FDQNP+SQIG++  K   A  LT+L G
Sbjct: 71  VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 130

Query: 149 SPESHVKALMGKLE--CSGDASLQNGLELVHGYLNQIPSYGHREVLILYSALNSCDPGDI 208
           +P  H+ +L   ++  C G+ SL N L +    L  +P +  REVLI++S+L +CDP +I
Sbjct: 131 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 190

Query: 209 METVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAI 268
            + ++  K +KIR S+IGL+AE+ +C  L +ETGG+Y V LDESH+KELL  H  PPPA 
Sbjct: 191 YDLIKSLKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPAS 250

Query: 269 ADSAMPNLIKMGFPQRA--------AESSIAICSCHKEAKAG---GGYTCPRCKARVCEL 328
           ++S   +LI+MGFPQ          A+ S ++       + G   GGY CP+C+A+ CEL
Sbjct: 251 SNSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCEL 310

Query: 329 PTECRICGLTLISSPHLARSYHHLFPIIPFDEVTDKVLHDPRHQSPKVCFGCQESLMNPG 388
           P EC+ICGLTL+S+PHLARSYHHLFP+  F E+  +      H   + C+ CQ  L +  
Sbjct: 311 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLE-----EHNGERFCYACQGELKDQH 370

Query: 389 TGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGC 412
                     C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 371 V-------YVCSVCQNVFCVDCDVFVHDSLHCCPGC 385

[Close]

BLAST of ClCG01G004970 vs. ExPASy Swiss-Prot
Match: Q13888 (General transcription factor IIH subunit 2 OS=Homo sapiens OX=9606 GN=GTF2H2 PE=1 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 1.7e-89
Identity = 165/396 (41.67%), Postives = 243/396 (61.36%), Query Frame = 0


Query: 29  WERTYADDRSWEALQEDESGLLRPIDNKAIYHAQYRRRLRSLSSLATTARIQKGLIRYLY 88
           WE  Y  +R+WE L+EDESG L+      ++ A+ +R            +++ G++R+LY
Sbjct: 11  WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEH------HGQVRLGMMRHLY 70

Query: 89  IIIDFSRAATEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTMKDGVAHCLTDLGG 148
           +++D SR   + D +P+R+    K +E FV E+FDQNP+SQIG++  K   A  LT+L G
Sbjct: 71  VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 130

Query: 149 SPESHVKALMGKLE--CSGDASLQNGLELVHGYLNQIPSYGHREVLILYSALNSCDPGDI 208
           +P  H+ +L   ++  C G+ SL N L +    L  +P +  REVLI++S+L +CDP +I
Sbjct: 131 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 190

Query: 209 METVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAI 268
            + ++  K +KIR SVIGL+AE+ +C  L +ETGG+Y V LDESH+KELL  H  PPPA 
Sbjct: 191 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPA- 250

Query: 269 ADSAMPNLIKMGFPQRA--------AESSIAICSCHKEAKAG---GGYTCPRCKARVCEL 328
           + S+  +LI+MGFPQ          A+ S ++       + G   GGY CP+C+A+ CEL
Sbjct: 251 SSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 310

Query: 329 PTECRICGLTLISSPHLARSYHHLFPIIPFDEVTDKVLHDPRHQSPKVCFGCQESLMNPG 388
           P EC+ICGLTL+S+PHLARSYHHLFP+  F E+  +      +   + C+GCQ  L +  
Sbjct: 311 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLE-----EYNGERFCYGCQGELKDQH 370

Query: 389 TGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGC 412
                     C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 371 V-------YVCAVCQNVFCVDCDVFVHDSLHCCPGC 385

[Close]

BLAST of ClCG01G004970 vs. ExPASy Swiss-Prot
Match: Q6P1K8 (General transcription factor IIH subunit 2-like protein OS=Homo sapiens OX=9606 GN=GTF2H2C PE=1 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 2.2e-89
Identity = 165/396 (41.67%), Postives = 243/396 (61.36%), Query Frame = 0


Query: 29  WERTYADDRSWEALQEDESGLLRPIDNKAIYHAQYRRRLRSLSSLATTARIQKGLIRYLY 88
           WE  Y  +R+WE L+EDESG L+      ++ A+ +R            +++ G++R+LY
Sbjct: 11  WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEH------HGQVRLGMMRHLY 70

Query: 89  IIIDFSRAATEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTMKDGVAHCLTDLGG 148
           +++D SR   + D +P+R+    K +E FV E+FDQNP+SQIG++  K   A  LT+L G
Sbjct: 71  VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 130

Query: 149 SPESHVKALMGKLE--CSGDASLQNGLELVHGYLNQIPSYGHREVLILYSALNSCDPGDI 208
           +P  H+ +L   ++  C G+ SL N L +    L  +P +  REVLI++S+L +CDP +I
Sbjct: 131 NPRKHITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 190

Query: 209 METVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAI 268
            + ++  K +KIR SVIGL+AE+ +C  L +ETGG+Y V LDESH+KELL  H  PPPA 
Sbjct: 191 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPA- 250

Query: 269 ADSAMPNLIKMGFPQRA--------AESSIAICSCHKEAKAG---GGYTCPRCKARVCEL 328
           + S+  +LI+MGFPQ          A+ S ++       + G   GGY CP+C+A+ CEL
Sbjct: 251 SSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCEL 310

Query: 329 PTECRICGLTLISSPHLARSYHHLFPIIPFDEVTDKVLHDPRHQSPKVCFGCQESLMNPG 388
           P EC+ICGLTL+S+PHLARSYHHLFP+  F E+  +      +   + C+GCQ  L +  
Sbjct: 311 PVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLE-----EYNGERFCYGCQGELKDQH 370

Query: 389 TGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGC 412
                     C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 371 V-------YVCAVCQNVFCVDCDVFVHDSLHCCPGC 385

[Close]

BLAST of ClCG01G004970 vs. ExPASy Swiss-Prot
Match: A0JN27 (General transcription factor IIH subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2h2 PE=1 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 4.8e-89
Identity = 165/397 (41.56%), Postives = 245/397 (61.71%), Query Frame = 0


Query: 29  WERTYADDRSWEALQEDESGLLRPIDNKAIYHAQYRRRLRSLSSLATTARIQKGLIRYLY 88
           WE  Y  +R+WE L+EDESG L+      ++ A+ +R            +++ G++R+LY
Sbjct: 11  WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEH------HGQVRLGMMRHLY 70

Query: 89  IIIDFSRAATEMDFRPSRMAVVAKHVEAFVREFFDQNPLSQIGLVTMKDGVAHCLTDLGG 148
           +++D SR   + D +P+R+    K +E FV E+FDQNP+SQIG++  K   A  LT+L G
Sbjct: 71  VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 130

Query: 149 SPESHVKALMGKLE--CSGDASLQNGLELVHGYLNQIPSYGHREVLILYSALNSCDPGDI 208
           +P  H+ +L   ++  C G+ SL N L +    L  +P +  REVLI++S+L +CDP +I
Sbjct: 131 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 190

Query: 209 METVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAI 268
            + ++  KT+KIR SVIGL+AE+ +C  L +ETGG+Y V LDE+H+KELL  H  PPPA 
Sbjct: 191 YDLIKTLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLARHVSPPPAS 250

Query: 269 ADSAMPNLIKMGFPQRA--------AESSIAICSC-HKEAKAG---GGYTCPRCKARVCE 328
           + S   +LI+MGFPQ          A+ S ++    +   + G   GGY CP+C+A+ CE
Sbjct: 251 SGSEC-SLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLGGYFCPQCRAKYCE 310

Query: 329 LPTECRICGLTLISSPHLARSYHHLFPIIPFDEVTDKVLHDPRHQSPKVCFGCQESLMNP 388
           LP EC+ICGLTL+S+PHLARSYHHLFP+  F E+  +      ++  + C+GCQ  L + 
Sbjct: 311 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLE-----EYKGERFCYGCQGELKDQ 370

Query: 389 GTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGC 412
                      C  C+  FC+DCD+++H+SLH CPGC
Sbjct: 371 HV-------YVCTVCRNVFCVDCDVFVHDSLHCCPGC 386

[Close]

BLAST of ClCG01G004970 vs. ExPASy TrEMBL
Match: A0A5A7UNG8 (General transcription factor IIH subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001400 PE=3 SV=1)

HSP 1 Score: 849.7 bits (2194), Expect = 5.1e-243
Identity = 408/424 (96.23%), Postives = 414/424 (97.64%), Query Frame = 0


Query: 1   MNNGENMRLNGEADEEDDDDDANGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60
           MNNGEN RLNGEADEEDDDDDAN GLAAWERTYADDRSWEALQEDESGLL PIDNKAIYH
Sbjct: 1   MNNGENRRLNGEADEEDDDDDAN-GLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYIIIDFSRAATEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLYI+IDFS+AATEMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTMKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHGYL 180
           FFDQNPLSQIGLVT+KDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVH YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180

Query: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240
           NQIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG
Sbjct: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKAG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAK G
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVTDKVLHDPRHQS 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEV+DKV HDPRHQ 
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360

Query: 361 PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLL 420
           PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFR PKL 
Sbjct: 361 PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLA 420

Query: 421 TSDE 425
           T DE
Sbjct: 421 TFDE 423

[Close]

BLAST of ClCG01G004970 vs. ExPASy TrEMBL
Match: A0A0A0KPM4 (General transcription factor IIH subunit OS=Cucumis sativus OX=3659 GN=Csa_5G169080 PE=3 SV=1)

HSP 1 Score: 846.7 bits (2186), Expect = 4.3e-242
Identity = 406/424 (95.75%), Postives = 414/424 (97.64%), Query Frame = 0


Query: 1   MNNGENMRLNGEADEEDDDDDANGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60
           MNNGEN RLNGEADEEDDDDDAN GLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH
Sbjct: 1   MNNGENRRLNGEADEEDDDDDAN-GLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYIIIDFSRAATEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLYI+IDFS+AATEMDFRPSRMAVVAKHV+AFVRE
Sbjct: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVRE 120

Query: 121 FFDQNPLSQIGLVTMKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHGYL 180
           FFDQNPLSQIGLVT+KDG A+CLTDLGGSPESHVKALMGKLECSGDASLQNGLELVH YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180

Query: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240
           NQIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG
Sbjct: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKAG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAK G
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVTDKVLHDPRHQS 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEV+DKV HDPRHQ 
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360

Query: 361 PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLL 420
           PKVCFGCQESLMNP TGNSP IRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKL 
Sbjct: 361 PKVCFGCQESLMNPSTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLA 420

Query: 421 TSDE 425
           TSDE
Sbjct: 421 TSDE 423

[Close]

BLAST of ClCG01G004970 vs. ExPASy TrEMBL
Match: A0A1S3CUH8 (General transcription factor IIH subunit OS=Cucumis melo OX=3656 GN=LOC103504674 PE=3 SV=1)

HSP 1 Score: 846.7 bits (2186), Expect = 4.3e-242
Identity = 407/424 (95.99%), Postives = 413/424 (97.41%), Query Frame = 0


Query: 1   MNNGENMRLNGEADEEDDDDDANGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60
           MNNGEN RLNGEADEEDDDDDAN GLAAWERTYADDRSWEALQEDESGLL PIDNKAIYH
Sbjct: 1   MNNGENRRLNGEADEEDDDDDAN-GLAAWERTYADDRSWEALQEDESGLLCPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYIIIDFSRAATEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLR+LSSLATTARIQKGLIRYLYI+IDFS+AATEMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTMKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHGYL 180
           FFDQNPLSQIGLVT+KDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVH YL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHSYL 180

Query: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240
           NQIPSYGHREVL+LYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG
Sbjct: 181 NQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKAG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAK G
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVTDKVLHDPRHQS 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEV+DKV HDPRHQ 
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQL 360

Query: 361 PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLL 420
           PKVCFGCQESLMNPGT NSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFR PKL 
Sbjct: 361 PKVCFGCQESLMNPGTRNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRHPKLA 420

Query: 421 TSDE 425
           T DE
Sbjct: 421 TFDE 423

[Close]

BLAST of ClCG01G004970 vs. ExPASy TrEMBL
Match: A0A6J1GC53 (General transcription factor IIH subunit OS=Cucurbita moschata OX=3662 GN=LOC111452792 PE=3 SV=1)

HSP 1 Score: 839.7 bits (2168), Expect = 5.3e-240
Identity = 399/424 (94.10%), Postives = 412/424 (97.17%), Query Frame = 0


Query: 1   MNNGENMRLNGEADEEDDDDDANGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60
           MNNGEN RLNGEA+EEDDDDDANGG+AAWERTYADDRSWEALQEDESGLLRPIDNKAI+H
Sbjct: 1   MNNGENRRLNGEAEEEDDDDDANGGMAAWERTYADDRSWEALQEDESGLLRPIDNKAIFH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYIIIDFSRAATEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLRSLSSLATTARIQKGLIRYLY++IDFSRAA EMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYVVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTMKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHGYL 180
           FFDQNPLSQIGLVT+KDGVAH LTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV GYL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHSLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240
           NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAE+FICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAELFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKAG 300
           GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRA ESSIAICSCHKEAK G
Sbjct: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAGESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVTDKVLHDPRHQS 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEV+DK+ HDPRHQ 
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKLFHDPRHQL 360

Query: 361 PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLL 420
           PKVCFGCQE+  NPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK  
Sbjct: 361 PKVCFGCQENFTNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TSDE 425
           TSD+
Sbjct: 421 TSDD 424

[Close]

BLAST of ClCG01G004970 vs. ExPASy TrEMBL
Match: A0A6J1DUE2 (General transcription factor IIH subunit OS=Momordica charantia OX=3673 GN=LOC111024539 PE=3 SV=1)

HSP 1 Score: 839.3 bits (2167), Expect = 6.9e-240
Identity = 401/424 (94.58%), Postives = 412/424 (97.17%), Query Frame = 0


Query: 1   MNNGENMRLNGEADEEDDDDDANGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60
           MNNGE  RLNGEADEEDDDDD NGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH
Sbjct: 1   MNNGEGSRLNGEADEEDDDDDGNGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYH 60

Query: 61  AQYRRRLRSLSSLATTARIQKGLIRYLYIIIDFSRAATEMDFRPSRMAVVAKHVEAFVRE 120
           AQYRRRLRSLSS+ATTARIQKGLIRYLYI+IDFSRAA EMDFRPSRMAVVAKHVEAFVRE
Sbjct: 61  AQYRRRLRSLSSIATTARIQKGLIRYLYIVIDFSRAAAEMDFRPSRMAVVAKHVEAFVRE 120

Query: 121 FFDQNPLSQIGLVTMKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHGYL 180
           FFDQNPLSQIGLVT+KDGVAHCLTDLGGSPESHVKALMGKLECSG+ASLQNGL+LV GYL
Sbjct: 121 FFDQNPLSQIGLVTIKDGVAHCLTDLGGSPESHVKALMGKLECSGEASLQNGLDLVCGYL 180

Query: 181 NQIPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240
           NQIPSYGHREVLILYSALNSCDPGDIMET+QKCKTSKIRCSVIGLTAEIFICRHLCQETG
Sbjct: 181 NQIPSYGHREVLILYSALNSCDPGDIMETIQKCKTSKIRCSVIGLTAEIFICRHLCQETG 240

Query: 241 GSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKAG 300
           GSYS+ALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAK G
Sbjct: 241 GSYSIALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVG 300

Query: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVTDKVLHDPRHQS 360
           GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEV+DKVL+DPRH+ 
Sbjct: 301 GGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVLNDPRHRL 360

Query: 361 PKVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKLL 420
           PKVCFGCQESLMN GTGNS GIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK  
Sbjct: 361 PKVCFGCQESLMNSGTGNSQGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPKSA 420

Query: 421 TSDE 425
            S+E
Sbjct: 421 ASNE 424

[Close]

BLAST of ClCG01G004970 vs. TAIR 10
Match: AT1G05055.1 (general transcription factor II H2 )

HSP 1 Score: 662.5 bits (1708), Expect = 2.2e-190
Identity = 318/417 (76.26%), Postives = 355/417 (85.13%), Query Frame = 0


Query: 3   NGENMRLNGEADEEDDDDDANGGLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHAQ 62
           + +  R N E +EEDD+D    G+  WER Y DDRSWE LQEDESGLLRPIDN AIYHAQ
Sbjct: 2   SNQRKRSNDEREEEDDEDAE--GIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQ 61

Query: 63  YRRRLRSLSSLATTARIQKGLIRYLYIIIDFSRAATEMDFRPSRMAVVAKHVEAFVREFF 122
           YRRRLR LS+ A   RIQKGLIRYLYI+IDFSRAA EMDFRPSRMA++AKHVEAF+REFF
Sbjct: 62  YRRRLRMLSAAAAGTRIQKGLIRYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFF 121

Query: 123 DQNPLSQIGLVTMKDGVAHCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHGYLNQ 182
           DQNPLSQIGLV++K+GVAH LTDLGGSPE+H+KALMGKLE  GD+SLQN LELVH +LNQ
Sbjct: 122 DQNPLSQIGLVSIKNGVAHTLTDLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQ 181

Query: 183 IPSYGHREVLILYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGS 242
           +PSYGHREVLILYSAL +CDPGDIMET+QKCK SK+RCSVIGL+AE+FIC+HLCQETGG 
Sbjct: 182 VPSYGHREVLILYSALCTCDPGDIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGL 241

Query: 243 YSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKAGGG 302
           YSVA+DE H K+LLLEHAPPPPAIA+ A+ NLIKMGFPQRAAE S+AICSCHKE K G G
Sbjct: 242 YSVAVDEVHLKDLLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAG 301

Query: 303 YTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVTD-KVLHDPRHQSP 362
           Y CPRCKARVC+LPTEC ICGLTL+SSPHLARSYHHLFPI PFDEV     L+D R +  
Sbjct: 302 YMCPRCKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLG 361

Query: 363 KVCFGCQESLMNPGTGNSPGIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK 419
           K CFGCQ+SL+  G GN P   V+C KCK +FCLDCDIYIHESLHNCPGCES  RPK
Sbjct: 362 KSCFGCQQSLI--GAGNKPVPCVTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPK 414

The following BLAST results are available for this feature:

BLAST of ClCG01G004970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874496.1	9.2e-247	97.41	general transcription factor IIH subunit 2 isoform X1 [Benincasa hispida]	[more]
KAA0055121.1	1.1e-242	96.23	general transcription factor IIH subunit 2 [Cucumis melo var. makuwa] >TYK20738....	[more]
XP_004143721.1	8.9e-242	95.75	general transcription factor IIH subunit 2 [Cucumis sativus] >XP_031741116.1 gen...	[more]
XP_008467294.1	8.9e-242	95.99	PREDICTED: general transcription factor IIH subunit 2 [Cucumis melo]	[more]
XP_022949453.1	1.1e-239	94.10	general transcription factor IIH subunit 2 [Cucurbita moschata] >XP_023525764.1 ...	[more]

BLAST of ClCG01G004970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVN9	3.1e-189	76.26	General transcription factor IIH subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GT...	[more]
Q2TBV5	4.3e-90	41.41	General transcription factor IIH subunit 2 OS=Bos taurus OX=9913 GN=GTF2H2 PE=2 ...	[more]
Q13888	1.7e-89	41.67	General transcription factor IIH subunit 2 OS=Homo sapiens OX=9606 GN=GTF2H2 PE=...	[more]
Q6P1K8	2.2e-89	41.67	General transcription factor IIH subunit 2-like protein OS=Homo sapiens OX=9606 ...	[more]
A0JN27	4.8e-89	41.56	General transcription factor IIH subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2...	[more]

BLAST of ClCG01G004970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UNG8	5.1e-243	96.23	General transcription factor IIH subunit OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0KPM4	4.3e-242	95.75	General transcription factor IIH subunit OS=Cucumis sativus OX=3659 GN=Csa_5G169...	[more]
A0A1S3CUH8	4.3e-242	95.99	General transcription factor IIH subunit OS=Cucumis melo OX=3656 GN=LOC103504674...	[more]
A0A6J1GC53	5.3e-240	94.10	General transcription factor IIH subunit OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1DUE2	6.9e-240	94.58	General transcription factor IIH subunit OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of ClCG01G004970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05055.1	2.2e-190	76.26	general transcription factor II H2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002035	von Willebrand factor, type A	SMART	SM00327	VWA_4	coord: 84..260 e-value: 6.1E-12 score: 55.7
IPR002035	von Willebrand factor, type A	PROSITE	PS50234	VWFA	coord: 86..225 score: 8.791193
IPR004595	TFIIH C1-like domain	SMART	SM01047	C1_4_2	coord: 363..413 e-value: 1.8E-20 score: 84.0
IPR004595	TFIIH C1-like domain	PFAM	PF07975	C1_4	coord: 364..413 e-value: 3.2E-19 score: 68.9
IPR007198	Ssl1-like	PFAM	PF04056	Ssl1	coord: 90..280 e-value: 8.6E-86 score: 286.7
IPR007198	Ssl1-like	CDD	cd01453	vWA_transcription_factor_IIH_type	coord: 82..264 e-value: 2.30308E-103 score: 302.712
IPR012170	TFIIH subunit Ssl1/p44	PIRSF	PIRSF015919	TFIIH_SSL1	coord: 1..414 e-value: 2.9E-162 score: 538.2
IPR012170	TFIIH subunit Ssl1/p44	TIGRFAM	TIGR00622	TIGR00622	coord: 302..413 e-value: 1.6E-37 score: 126.6
IPR036465	von Willebrand factor A-like domain superfamily	GENE3D	3.40.50.410	von Willebrand factor, type A domain	coord: 80..265 e-value: 5.9E-72 score: 243.2
IPR036465	von Willebrand factor A-like domain superfamily	SUPERFAMILY	53300	vWA-like	coord: 82..249
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 340..418 e-value: 4.7E-21 score: 76.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR12695	GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2	coord: 19..411
None	No IPR available	SUPERFAMILY	57889	Cysteine-rich domain	coord: 337..412
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 386..406

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G004970.1	ClCG01G004970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006281	DNA repair
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0000439	transcription factor TFIIH core complex
cellular_component	GO:0005675	transcription factor TFIIH holo complex
molecular_function	GO:0008270	zinc ion binding