ClCG01G001300 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G001300
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionGlycine--tRNA ligase beta subunit
LocationCG_Chr01: 1203760 .. 1204185 (+)
RNA-Seq ExpressionClCG01G001300
SyntenyClCG01G001300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCTAGTATCGGTACTGGCGGAGATTCTAGAGGAGTACACGGCGGTGCTCGCGGCGGTGCTCCGGCAGCTCTTTTATTCCGCGCCATTTCCTCGCCGTGTCCGATTTCTCATTCTTCATAATCTCCCTTTCCCCGATCGCCCAAGTGGCTTATCGGCGTAGCGGCCATTTTTGTAAGCTTCCTCTTCTCTCCCTTCAATTGGTATGATTTGATAATTTCATCTCACGATTTTCTTCTTCTTATGGTTTGATCTGTTCTTCGTTTATCGATCTCTGGATTGTTGTTTTTATGGATTTCGAATTTGAGTCGAAGGTGAATTGGATTTTGGATCTCTGTTTTCCTCTGTTTCAGATTGGGGACTGACGGCTGAGCGGTCGCCCCAGATTCATCGGCGGATTTTTTTTTTTTTTTCTTTTTTAATT

mRNA sequence

ATGATGCTAGTATCGGTACTGGCGGAGATTCTAGAGGAGTACACGGCGGTGCTCGCGGCGGTGCTCCGGCAGCTCTTTTATTCCGCGCCATTTCCTCGCCGTGTCCGATTTCTCATTCTTCATAATCTCCCTTTCCCCGATCGCCCAAGTGGCTTATCGGCATTGGGGACTGACGGCTGAGCGGTCGCCCCAGATTCATCGGCGGATTTTTTTTTTTTTTTCTTTTTTAATT

Coding sequence (CDS)

ATGATGCTAGTATCGGTACTGGCGGAGATTCTAGAGGAGTACACGGCGGTGCTCGCGGCGGTGCTCCGGCAGCTCTTTTATTCCGCGCCATTTCCTCGCCGTGTCCGATTTCTCATTCTTCATAATCTCCCTTTCCCCGATCGCCCAAGTGGCTTATCGGCATTGGGGACTGACGGCTGA

Protein sequence

MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSALGTDG
Homology
BLAST of ClCG01G001300 vs. NCBI nr
Match: XP_008437471.1 (PREDICTED: uncharacterized protein LOC103482883 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA 55
          MMLVSVLAEILEEYT VL+ VLRQLFYSAPFPRRVRFLILHNLPF DRP+ LSA
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPRRVRFLILHNLPFADRPTALSA 54

BLAST of ClCG01G001300 vs. NCBI nr
Match: XP_038907007.1 (uncharacterized protein LOC120092849 [Benincasa hispida])

HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA 55
          MMLVSVLAEILEEYTAVL  VLRQLF+SAPFPRR+RFLILHNLPF DRPSG++A
Sbjct: 1  MMLVSVLAEILEEYTAVLVEVLRQLFHSAPFPRRIRFLILHNLPFVDRPSGVTA 54

BLAST of ClCG01G001300 vs. NCBI nr
Match: XP_011654666.1 (uncharacterized protein LOC105435431 [Cucumis sativus] >KGN49959.1 hypothetical protein Csa_000696 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 1.5e-14
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA 55
          MMLVSVLAEILEEYT VL+ VLRQLFYSAPFP RVRFLILHNLPF DRP+ L+A
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTALAA 54

BLAST of ClCG01G001300 vs. NCBI nr
Match: XP_022970120.1 (uncharacterized protein LOC111469109 [Cucurbita maxima])

HSP 1 Score: 79.7 bits (195), Expect = 9.2e-12
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA 55
          MMLVSVLAEILEEYT +L  VLRQLF+SAPFPRRVRFLILHNLPF +  S  S+
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSS 54

BLAST of ClCG01G001300 vs. NCBI nr
Match: KAG7017064.1 (hypothetical protein SDJN02_22176, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.7 bits (195), Expect = 9.2e-12
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA 55
          MMLVSVLAEILEEYT +L  VLRQLF+SAPFPRRVRFLILHNLPF +  S  S+
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSS 54

BLAST of ClCG01G001300 vs. ExPASy TrEMBL
Match: A0A1S3AUP0 (uncharacterized protein LOC103482883 OS=Cucumis melo OX=3656 GN=LOC103482883 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.7e-16
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA 55
          MMLVSVLAEILEEYT VL+ VLRQLFYSAPFPRRVRFLILHNLPF DRP+ LSA
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPRRVRFLILHNLPFADRPTALSA 54

BLAST of ClCG01G001300 vs. ExPASy TrEMBL
Match: A0A0A0KM75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146820 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.3e-15
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA 55
          MMLVSVLAEILEEYT VL+ VLRQLFYSAPFP RVRFLILHNLPF DRP+ L+A
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTALAA 54

BLAST of ClCG01G001300 vs. ExPASy TrEMBL
Match: A0A6J1I1Z0 (uncharacterized protein LOC111469109 OS=Cucurbita maxima OX=3661 GN=LOC111469109 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.5e-12
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA 55
          MMLVSVLAEILEEYT +L  VLRQLF+SAPFPRRVRFLILHNLPF +  S  S+
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSS 54

BLAST of ClCG01G001300 vs. ExPASy TrEMBL
Match: A0A6J1EQP1 (uncharacterized protein LOC111435715 OS=Cucurbita moschata OX=3662 GN=LOC111435715 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.5e-12
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSA 55
          MMLVSVLAEILEEYT +L  VLRQLF+SAPFPRRVRFLILHNLPF +  S  S+
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSS 54

BLAST of ClCG01G001300 vs. ExPASy TrEMBL
Match: A0A6J1DZC9 (uncharacterized protein LOC111025999 OS=Momordica charantia OX=3673 GN=LOC111025999 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSALGTDG 60
          MMLVSV+AE+LEEYT +LA VLRQLF SAPFPRRVRFLILHNLP  +  +  + L   G
Sbjct: 1  MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPSGNNSNSSAPLNRMG 59

BLAST of ClCG01G001300 vs. TAIR 10
Match: AT1G33055.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; Has 20 Blast hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-08
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAAVLRQLFYSAPFPRRVRFLILHNLPFPDRPSGLSAL 56
          M+LV+++AE+++EYT VLA V+  LF  APFPRR+R  IL++LPF    + L  L
Sbjct: 1  MLLVTLIAEMMKEYTVVLAGVVEHLFSQAPFPRRIRLHILYSLPFHSSNTSLPLL 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008437471.11.8e-1588.89PREDICTED: uncharacterized protein LOC103482883 [Cucumis melo][more]
XP_038907007.11.8e-1587.04uncharacterized protein LOC120092849 [Benincasa hispida][more]
XP_011654666.11.5e-1485.19uncharacterized protein LOC105435431 [Cucumis sativus] >KGN49959.1 hypothetical ... [more]
XP_022970120.19.2e-1277.78uncharacterized protein LOC111469109 [Cucurbita maxima][more]
KAG7017064.19.2e-1277.78hypothetical protein SDJN02_22176, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3AUP08.7e-1688.89uncharacterized protein LOC103482883 OS=Cucumis melo OX=3656 GN=LOC103482883 PE=... [more]
A0A0A0KM757.3e-1585.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146820 PE=4 SV=1[more]
A0A6J1I1Z04.5e-1277.78uncharacterized protein LOC111469109 OS=Cucurbita maxima OX=3661 GN=LOC111469109... [more]
A0A6J1EQP14.5e-1277.78uncharacterized protein LOC111435715 OS=Cucurbita moschata OX=3662 GN=LOC1114357... [more]
A0A6J1DZC92.4e-1067.80uncharacterized protein LOC111025999 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
AT1G33055.11.3e-0850.91unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR48175OS04G0581700 PROTEINcoord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G001300.1ClCG01G001300.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016874 ligase activity