Chy9G171110 (gene) Cucumber (hystrix) v1

Overview
NameChy9G171110
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionTrafficking protein particle complex subunit
LocationchrH09: 15670767 .. 15673472 (+)
RNA-Seq ExpressionChy9G171110
SyntenyChy9G171110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTTCTTTGGTGGGTCAGAAATTAGTCCTTCGCCTCCGGTACCGACAGCAACTGGAAACAATGTGCATATGATGTATATTTTCAATAGGAATGGAGTTTGCTTGTTCTACAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCCCTTAAATCCTTTACTGCCAAGATGGACCCAACCAGGTTCGTGTTTCTTCCTTCTTTGGGCAACTACTTTAGTTTATGGTGTGTCTAGTATATGTAGTGATCCAACCAGATAGGAGATTAATGCAAACCATAGTCTTAATAACGTGACAAATGCATTGCCCTTTTATGGTTGGTGGCAATAACTAGTAAGATGTCTAATTTGATTGTAGATTTTGATTTTGATCTTTCAAAGTATTAACTTACTGGAAAATGATGAGCTGCTTTTGGGAGTTAGGTTTTGAAGTGATAACTTTTTTTACTTTCTTTGATACAGTGCTGATAAAGGAAATCTTGGGGTGCCTCAGTTACCTGGCCAAGGTTGTTCATTTCACAGTTTTCGTACTAATACCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGGTTTCCTTAACCCTCCTTCTTCCGTTCTTGTTTATGTTTTCCATAGTAGCTTTATGCATGTCTACTTGAATTGTTAAAATACTGAACTTGATGTATGACTATGGCATAATCGGAGCGAACTACATATGAATTATTGAGATTTAATGAAACCAATATTTATTTTATGTCATGGACTTGTTTATTTATTGTTATTGTCATTGTTATTGCCAAGGTATATGGGAGTTTTAAAGGATTATCTTCTCTCTGAACTTGTGTCACATGGATAATTTAAGTTTTTATTTGTAACCTCGCAAAAAATGATCTTGCTTTTCTTTCTTCTTCTTAGAAAATTCATTTTCCTTGGCAACGATTAGTAGTTTTAACAAATATATATATATATATTTATTTGCTTCTTGTTTTACACTTGAAGAATTAAAGTTGAACTTTTTGGAGAAGCCATGTAAAGCCGCTATTTTAAAATTGTTTCTGTTTTGAAAAAGAATTAACCAAATGAGGAAAATTGAGATCACTGTGACTATGGGGTAAATTAATTTTAAGTTTGATGGATCATTTCTTTGTTTTCAGATTATTCTGGTTACCCATCCTAGAACCGGTGATCTGAGGGACCCGTTGAAGTACATCTACAACTTGTATGTTGAATATGTAGTGAAAAATCCAATCTACAGTCCAGGAACTCCAATCAGGTAAACTGTTAGCTTTGGTTGATGCATATGTTCTATATACCAAACGTAGTAATTTATCTGAAAGAAACTCCGTTTGAAATCTTGCTGAATCAAGTCAATATCTTTGATGAATTTGAATTTGTAATGCATGCATTCATTGGTTTCAATTTACAAAAGATTAAATGGCGTCTGGGGAAAGGGAACTTATTATTGGTTCTTAACTTTAATTATAACTTATATAAGTCTGTCCCAGAGACCTTTTCTGGGATATTTTAGGCCTTACTAGATTCTCCCTTTAGACTAAATTACCACTTCAAATCCTGGGGTTGAGCTTGGTTTCAATATGACTCCTATGATCTCACGAACATCTATGTATGGTTACCATATGTTAGTAGTTTAGATGTACTGATATTGAATGGTAGCACATCGTCCTTCTTTTCCACTTCCAAAGAAAAAGAGTAAGAAAACTATCACCCCCTAAAGATGGTAAGATTTTTGGAGATTTGACTGAGCTAGCCTATAGGGCTATAATGAAATTGAAAATTTTAAATCATATAAGCGTAATTGAAACCAAACTCAAACCATATGGACAATTCAATCCTTCTTTTATGTGGGAGAATTTTTGTTACATTTCTCCTGTTTACTCTTTTTAACAAAAAATGTGAAATGTTTCAAAATCTTATTTACAGACTTAACCCAACCTCAAACCATTCATGCTTTTGTTTGCTATGTTATCGTTCTTATGGTGAAAATAAAGTTAATGTATGTTTGTCCTGGCAACACAATATCAACTCTCCCTTGATTTTGCTTTCTGCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATGTAAGAACTATATTGTAGAAATCAGAGGTAGCGACTACTCTGCCGATTTAGTTTCATTCAATTTGTATGCTTTGTCTATCTTTTGTCTATGAATGAATGTGATTCACTGGATAATGGTGCAGTTGCAGGCTATTAAAATGCCTACATGGGAGTTTCTATTTGTTTTCTATTGGTTGGACTGTAGACAGTGCACCGGTATGAATTATTCTAGCTTACCTTTTGCCTTTCCCCCTTTCGTCTCCCAGCATTCTATGGTAACTTCTCTGTGATAGTAGTGGTGGAAGAAAAATGAAAAACAAAAAGAAGAAAGAATTCTAGTACAACTGTTTGCTGCTCATGTATAATTTGTAGTAATGCAACTACAGTTCTTGTTTCATTTACAAACGTACCATTACATTAGGCGTTGTTTGTGTAAAAATGTGAAAGGTTTCAAATGTGACATATTCCCTGTTTATTCAACACCTAGGATCCCACCCATCATAATATGGGAAGATTGTCCATCTTGAGGAATGGATCTTGGTGCTTTAAGGTTTATAGGCCAAAACCAATGGAAGGATACATTTGTAGCTACGGCTAG

mRNA sequence

ATGCAGTTCTTTGGTGGGTCAGAAATTAGTCCTTCGCCTCCGGTACCGACAGCAACTGGAAACAATGTGCATATGATGTATATTTTCAATAGGAATGGAGTTTGCTTGTTCTACAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCCCTTAAATCCTTTACTGCCAAGATGGACCCAACCAGTGCTGATAAAGGAAATCTTGGGGTGCCTCAGTTACCTGGCCAAGGTTGTTCATTTCACAGTTTTCGTACTAATACCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGATTATTCTGGTTACCCATCCTAGAACCGGTGATCTGAGGGACCCGTTGAAGTACATCTACAACTTGTATGTTGAATATGTAGTGAAAAATCCAATCTACAGTCCAGGAACTCCAATCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATTTGCAGGCTATTAAAATGCCTACATGGGAGTTTCTATTTGTTTTCTATTGGTTGGACTGTAGACAGTGCACCGGTATGAATTATTCTAGCTTACCTTTTGCCTTTCCCCCTTTCGTCTCCCAGCATTCTATGGATCCCACCCATCATAATATGGGAAGATTGTCCATCTTGAGGAATGGATCTTGGTGCTTTAAGGTTTATAGGCCAAAACCAATGGAAGGATACATTTGTAGCTACGGCTAG

Coding sequence (CDS)

ATGCAGTTCTTTGGTGGGTCAGAAATTAGTCCTTCGCCTCCGGTACCGACAGCAACTGGAAACAATGTGCATATGATGTATATTTTCAATAGGAATGGAGTTTGCTTGTTCTACAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCCCTTAAATCCTTTACTGCCAAGATGGACCCAACCAGTGCTGATAAAGGAAATCTTGGGGTGCCTCAGTTACCTGGCCAAGGTTGTTCATTTCACAGTTTTCGTACTAATACCTACAAGCTCAGTTTTACTGAAACTCCATCAGGGATAAAGATTATTCTGGTTACCCATCCTAGAACCGGTGATCTGAGGGACCCGTTGAAGTACATCTACAACTTGTATGTTGAATATGTAGTGAAAAATCCAATCTACAGTCCAGGAACTCCAATCAGGTGTGAGCTATTCAATACAAGTCTTGACCAATATTTGCAGGCTATTAAAATGCCTACATGGGAGTTTCTATTTGTTTTCTATTGGTTGGACTGTAGACAGTGCACCGGTATGAATTATTCTAGCTTACCTTTTGCCTTTCCCCCTTTCGTCTCCCAGCATTCTATGGATCCCACCCATCATAATATGGGAAGATTGTCCATCTTGAGGAATGGATCTTGGTGCTTTAAGGTTTATAGGCCAAAACCAATGGAAGGATACATTTGTAGCTACGGCTAG

Protein sequence

MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYLQAIKMPTWEFLFVFYWLDCRQCTGMNYSSLPFAFPPFVSQHSMDPTHHNMGRLSILRNGSWCFKVYRPKPMEGYICSYG*
Homology
[Close]
BLAST of Chy9G171110 vs. ExPASy Swiss-Prot
Match: Q557G3 (Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum OX=44689 GN=trappc1-1 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-30
Identity = 62/152 (40.79%), Postives = 97/152 (63.82%), Query Frame = 0 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLG 82
           ++ +YIFN++G C++Y +WN+  ++ N  +D KL+FG+L+SLK+F     P   D     
Sbjct: 2   IYNIYIFNKDGTCIYYEDWNKKKQSQNQSEDQKLLFGMLYSLKAFITSSSPKKID----- 61

Query: 83  VPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYN-LYVEYVV 142
                     FH ++T+TYKL + ET S IK I+++ P   DLRD LK IY+ ++VEYV+
Sbjct: 62  ------DKTGFHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVI 121

Query: 143 KNPIYSPGTPIRCELFNTSLDQYLQAIKMPTW 174
           KNPIY  GT ++C+ F   L+ YL+  +MP++
Sbjct: 122 KNPIYKHGTTVKCDTFINQLNLYLK--QMPSF 140

[Close]
BLAST of Chy9G171110 vs. ExPASy Swiss-Prot
Match: Q5NCF2 (Trafficking protein particle complex subunit 1 OS=Mus musculus OX=10090 GN=Trappc1 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.5e-29
Identity = 64/148 (43.24%), Postives = 97/148 (65.54%), Query Frame = 0 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYN-LYVEYV 142
                      F SF+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE+V
Sbjct: 63  -----------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFV 122

Query: 143 VKNPIYSPGTPIRCELFNTSLDQYLQAI 169
           VKNP+   G  ++ ELF + LD Y++++
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of Chy9G171110 vs. ExPASy Swiss-Prot
Match: Q2KMM2 (Trafficking protein particle complex subunit 1 OS=Rattus norvegicus OX=10116 GN=Trappc1 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.5e-29
Identity = 64/148 (43.24%), Postives = 97/148 (65.54%), Query Frame = 0 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYN-LYVEYV 142
                      F SF+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE+V
Sbjct: 63  -----------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFV 122

Query: 143 VKNPIYSPGTPIRCELFNTSLDQYLQAI 169
           VKNP+   G  ++ ELF + LD Y++++
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of Chy9G171110 vs. ExPASy Swiss-Prot
Match: Q17QI1 (Trafficking protein particle complex subunit 1 OS=Bos taurus OX=9913 GN=TRAPPC1 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.6e-28
Identity = 63/148 (42.57%), Postives = 96/148 (64.86%), Query Frame = 0 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYN-LYVEYV 142
                      F +F+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE V
Sbjct: 63  -----------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELV 122

Query: 143 VKNPIYSPGTPIRCELFNTSLDQYLQAI 169
           VKNP+   G  ++ ELF + LD Y++++
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of Chy9G171110 vs. ExPASy Swiss-Prot
Match: Q9Y5R8 (Trafficking protein particle complex subunit 1 OS=Homo sapiens OX=9606 GN=TRAPPC1 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.6e-28
Identity = 63/148 (42.57%), Postives = 96/148 (64.86%), Query Frame = 0 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLKSFTAKMDPTSADKGNL 82
           VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS++SF +KM P     G  
Sbjct: 3   VHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-- 62

Query: 83  GVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYN-LYVEYV 142
                      F +F+T+ YKL + ETP+GIK+++ T    G +RD L +IY+ LYVE V
Sbjct: 63  -----------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELV 122

Query: 143 VKNPIYSPGTPIRCELFNTSLDQYLQAI 169
           VKNP+   G  ++ ELF + LD Y++++
Sbjct: 123 VKNPLCPLGQTVQSELFRSRLDSYVRSL 137

[Close]
BLAST of Chy9G171110 vs. ExPASy TrEMBL
Match: A0A5D3C227 (Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00870 PE=3 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 2.5e-109
Identity = 185/189 (97.88%), Postives = 186/189 (98.41%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYLQAIKMPTWEFLFVFY 180
           RTGDLRDPLKYIYNLYVEYVVKNP+YSPGTPIRCELFNTSLDQYLQAIKMPTWEFLFVFY
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYLQAIKMPTWEFLFVFY 180

Query: 181 WLDCRQCTG 190
           W DCRQC G
Sbjct: 181 WFDCRQCNG 189

[Close]
BLAST of Chy9G171110 vs. ExPASy TrEMBL
Match: A0A0A0KM26 (Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_5G139910 PE=3 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 1.0e-94
Identity = 165/168 (98.21%), Postives = 167/168 (99.40%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYLQAI 169
           RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQY++ I
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 168

[Close]
BLAST of Chy9G171110 vs. ExPASy TrEMBL
Match: A0A1S3AUA1 (Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC103482924 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 3.9e-94
Identity = 163/168 (97.02%), Postives = 167/168 (99.40%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYLQAI 169
           RTGDLRDPLKYIYNLYVEYVVKNP+YSPGTPIRCELFNTSLDQY+++I
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYVRSI 168

[Close]
BLAST of Chy9G171110 vs. ExPASy TrEMBL
Match: A0A6J1DZQ0 (Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=LOC111026095 PE=3 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 1.1e-91
Identity = 159/168 (94.64%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPP PTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSL+SFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYLQAI 169
           RT DLRD LKYIYNLYVEYVVKNP+YSPGTPIRCELFNTSLDQY+++I
Sbjct: 121 RTSDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYVRSI 168

[Close]
BLAST of Chy9G171110 vs. ExPASy TrEMBL
Match: A0A6J1IAE9 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111471566 PE=3 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 3.1e-91
Identity = 160/168 (95.24%), Postives = 165/168 (98.21%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSP VPTATGNNV+MMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPTVPTATGNNVNMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYLQAI 169
           RTGDLRD LKYIYNLYVEYVVKNP+YSPGTPIRCELF+TSLDQY++ I
Sbjct: 121 RTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFSTSLDQYVRTI 168

[Close]
BLAST of Chy9G171110 vs. NCBI nr
Match: KAA0042588.1 (trafficking protein particle complex subunit 1 [Cucumis melo var. makuwa] >TYK05991.1 trafficking protein particle complex subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 404 bits (1037), Expect = 2.79e-140
Identity = 185/189 (97.88%), Postives = 186/189 (98.41%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYLQAIKMPTWEFLFVFY 180
           RTGDLRDPLKYIYNLYVEYVVKNP+YSPGTPIRCELFNTSLDQYLQAIKMPTWEFLFVFY
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYLQAIKMPTWEFLFVFY 180

Query: 181 WLDCRQCTG 189
           W DCRQC G
Sbjct: 181 WFDCRQCNG 189

[Close]
BLAST of Chy9G171110 vs. NCBI nr
Match: XP_004145907.1 (trafficking protein particle complex subunit 1 [Cucumis sativus] >XP_031741655.1 trafficking protein particle complex subunit 1 [Cucumis sativus] >KGN49914.1 hypothetical protein Csa_000153 [Cucumis sativus])

HSP 1 Score: 355 bits (910), Expect = 2.53e-122
Identity = 165/168 (98.21%), Postives = 167/168 (99.40%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYLQAI 168
           RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQY++ I
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRTI 168

[Close]
BLAST of Chy9G171110 vs. NCBI nr
Match: XP_008437540.1 (PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo] >XP_008437541.1 PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo])

HSP 1 Score: 353 bits (905), Expect = 1.46e-121
Identity = 163/168 (97.02%), Postives = 167/168 (99.40%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSVDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYLQAI 168
           RTGDLRDPLKYIYNLYVEYVVKNP+YSPGTPIRCELFNTSLDQY+++I
Sbjct: 121 RTGDLRDPLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYVRSI 168

[Close]
BLAST of Chy9G171110 vs. NCBI nr
Match: XP_038906999.1 (trafficking protein particle complex subunit 1 [Benincasa hispida] >XP_038907000.1 trafficking protein particle complex subunit 1 [Benincasa hispida])

HSP 1 Score: 350 bits (899), Expect = 1.16e-120
Identity = 163/168 (97.02%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPT TGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTTTGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYLQAI 168
           RTGDLRD LKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQY+++I
Sbjct: 121 RTGDLRDSLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYVRSI 168

[Close]
BLAST of Chy9G171110 vs. NCBI nr
Match: XP_022159770.1 (trafficking protein particle complex subunit 1 [Momordica charantia] >XP_022159771.1 trafficking protein particle complex subunit 1 [Momordica charantia] >XP_022159772.1 trafficking protein particle complex subunit 1 [Momordica charantia] >XP_022159773.1 trafficking protein particle complex subunit 1 [Momordica charantia] >XP_022159774.1 trafficking protein particle complex subunit 1 [Momordica charantia])

HSP 1 Score: 345 bits (885), Expect = 1.63e-118
Identity = 159/169 (94.08%), Postives = 164/169 (97.04%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPP PTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSL+SFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP
Sbjct: 61  LFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYLQAIK 169
           RT DLRD LKYIYNLYVEYVVKNP+YSPGTPIRCELFNTSLDQY+++I 
Sbjct: 121 RTSDLRDSLKYIYNLYVEYVVKNPLYSPGTPIRCELFNTSLDQYVRSIS 169

[Close]
BLAST of Chy9G171110 vs. TAIR 10
Match: AT1G51160.1 (SNARE-like superfamily protein )

HSP 1 Score: 324.7 bits (831), Expect = 6.4e-89
Identity = 147/168 (87.50%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTA+GNN HMMY+FNRNGVCL Y+EWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDP +ADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPVNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYLQAI 169
           +TGDLR+ LKYIY+LYVEYVVKNPIYSPG+PI+ ELFNT+LDQY+++I
Sbjct: 121 KTGDLRESLKYIYSLYVEYVVKNPIYSPGSPIKSELFNTALDQYVRSI 168

[Close]
BLAST of Chy9G171110 vs. TAIR 10
Match: AT1G51160.2 (SNARE-like superfamily protein )

HSP 1 Score: 324.7 bits (831), Expect = 6.4e-89
Identity = 147/168 (87.50%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MQFFGGSEISPSPPVPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGL 60
           MQFFGGSEISPSPPVPTA+GNN HMMY+FNRNGVCL Y+EWNRPL TLNPQQDHKLMFGL
Sbjct: 1   MQFFGGSEISPSPPVPTASGNNAHMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGL 60

Query: 61  LFSLKSFTAKMDPTSADKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHP 120
           LFSLKS TAKMDP +ADKGNLGVPQLPGQGCSFHSFRTNTYKLSF ETPSGIKIILVTHP
Sbjct: 61  LFSLKSLTAKMDPVNADKGNLGVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHP 120

Query: 121 RTGDLRDPLKYIYNLYVEYVVKNPIYSPGTPIRCELFNTSLDQYLQAI 169
           +TGDLR+ LKYIY+LYVEYVVKNPIYSPG+PI+ ELFNT+LDQY+++I
Sbjct: 121 KTGDLRESLKYIYSLYVEYVVKNPIYSPGSPIKSELFNTALDQYVRSI 168

[Close]
BLAST of Chy9G171110 vs. TAIR 10
Match: AT5G02280.1 (SNARE-like superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-14
Identity = 43/146 (29.45%), Postives = 71/146 (48.63%), Query Frame = 0 

Query: 23  VHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLKSFTAKMDPTSADKGNLG 82
           ++ +YI N++G  +FY++     R      D   +  L  S+ + + ++ P +       
Sbjct: 4   IYSLYIINKSGGLIFYKDCGTKGRM--DTNDSLRVASLWHSMHAISQQLSPVN------- 63

Query: 83  VPQLPGQGCS-FHSFRTNTYKLSFTETPSGIKIILVTHPRTGDLRDPLKYIYNLYVEYVV 142
                  GCS       +T+ L   ++  G K  +V  P T  +   L+YIY LY +YV+
Sbjct: 64  -------GCSGIELLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVL 123

Query: 143 KNPIYSPGTPIRCELFNTSLDQYLQA 168
           KNP Y    PIRCELF+ +L Q +Q+
Sbjct: 124 KNPFYEIEMPIRCELFDINLTQAVQS 133

The following BLAST results are available for this feature:
BLAST of Chy9G171110 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q557G31.3e-3040.79Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum OX=44... [more]
Q5NCF22.5e-2943.24Trafficking protein particle complex subunit 1 OS=Mus musculus OX=10090 GN=Trapp... [more]
Q2KMM22.5e-2943.24Trafficking protein particle complex subunit 1 OS=Rattus norvegicus OX=10116 GN=... [more]
Q17QI11.6e-2842.57Trafficking protein particle complex subunit 1 OS=Bos taurus OX=9913 GN=TRAPPC1 ... [more]
Q9Y5R81.6e-2842.57Trafficking protein particle complex subunit 1 OS=Homo sapiens OX=9606 GN=TRAPPC... [more]
BLAST of Chy9G171110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C2272.5e-10997.88Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194... [more]
A0A0A0KM261.0e-9498.21Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_5... [more]
A0A1S3AUA13.9e-9497.02Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC10348... [more]
A0A6J1DZQ01.1e-9194.64Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1IAE93.1e-9195.24Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
BLAST of Chy9G171110 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0042588.12.79e-14097.88trafficking protein particle complex subunit 1 [Cucumis melo var. makuwa] >TYK05... [more]
XP_004145907.12.53e-12298.21trafficking protein particle complex subunit 1 [Cucumis sativus] >XP_031741655.1... [more]
XP_008437540.11.46e-12197.02PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo] >XP_008... [more]
XP_038906999.11.16e-12097.02trafficking protein particle complex subunit 1 [Benincasa hispida] >XP_038907000... [more]
XP_022159770.11.63e-11894.08trafficking protein particle complex subunit 1 [Momordica charantia] >XP_0221597... [more]
BLAST of Chy9G171110 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G51160.16.4e-8987.50SNARE-like superfamily protein [more]
AT1G51160.26.4e-8987.50SNARE-like superfamily protein [more]
AT5G02280.13.9e-1429.45SNARE-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007233Trafficking protein particle complex subunitSMARTSM01399Sybindin_2coord: 23..168
e-value: 7.9E-63
score: 224.7
IPR007233Trafficking protein particle complex subunitPFAMPF04099Sybindincoord: 23..167
e-value: 7.9E-48
score: 162.0
IPR007233Trafficking protein particle complex subunitPANTHERPTHR23249TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNITcoord: 1..167
NoneNo IPR availableGENE3D3.30.450.70coord: 22..173
e-value: 2.8E-47
score: 162.3
NoneNo IPR availablePANTHERPTHR23249:SF18TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1-LIKEcoord: 1..167
NoneNo IPR availableCDDcd14855TRAPPC1_MUM2coord: 24..164
e-value: 2.94688E-67
score: 202.007
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 23..166

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy9G171110.1Chy9G171110.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0030008 TRAPP complex