Chy9G170660 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACCTTTGGATGGATTGCCATTCAAATGATGTAAAGGCCAAGCCCGGCGGGAATCAGAGCAATGAAGGCGACCTTGAGAAGCAGAGAGTTGCTCAACCATCATCATCAGCATTAGAGCTCTCTACCAGAGATGGTGATGATAATACACTCTTAACCATTGTTGTTTCTACAGGGGAGTCTAAACCAACCTCTGAGGTTCCTGGTCCTGGGACTCTTCGCTCTCAAGAAGAAGGGATATTGGCTTGTGCAGTTTCCCCAAAAAAGGAGCTCTTGTCTACTACTTCTGGTTCTGATGAGCAGTGCAGGTATATTTGAGTTGCTTCTCCTCCATTTAAAATGCATTTTCAATTGTTTTGTTCATTTCTGCTGCTACGTTTTGGCAGCACCTTTTTTAGTTAGTTCCTCCTTCCTCATACTTTTGTTATTTATGTTGTTTGTTCATTGTTTGTCATCCAAAAAACATTAGATAAACTCCTAAGTTTGCTTTTTGAAAATCGATACTTTATGTGGTTTGTTAATGGTTTGTTAAAACCACCACTAAATTGATAAGGTTAAGCCATGAATCAAATATTTGATCTATTTATGTAGATTGGGGAAGGAAATGACTTTGTTGGTGAGGTGAGTTTGACTGAATTCTAAAAGCTTAAGTTGATGGAAGATATTTAATTTGTCTGTCACAGTAAGATTAGAGCCGCAAACATGAGTATAATGGTTAAGGCATTTCCCTTGAGGTCGGAGGTTCAAGTCTTTACCACACATTTGTTGCACTAAAGACTAAAGAGAAAAGACTAAATCCCTATTTTTTTTACATTGTAGATGACACTTTTTCAAATATTGTTGTCTTTCCACTATTACTACTGGCTTCAATTATCTGGTTAATGTGTTGTAAAATGTAAAGGAAGTCGAGGCCATTAAGCCTGAGTACTATTATTCAGAATTTGTCAGCAAGAGAAGGAGGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGCGGTCTCGCAAAAGCTCATCGGACTTGTATAGATACTTGGTTTCGTACTAAAGGATCAAACAGATGTGAGATATGCCAGTAAGTTGCTTTTTTAGAGAATGCCATTTATTAAATTAAACCAATCATATCGTGTGTCAAGGGCATTTTGAAACGCAATTTGCTAAACTTTTCAGGGTTGTAGCGGCAAATGTATCATCTCCACAGTCACATCATGGTGTAGGTACTCTGTAGCTCTTGATGCAATGATTATGAACTTATAAAATGAAACGTCTCAATGAATACTGAATCAATTTTTTCGTCCTTTCTACAGTGTAAGCGTTATTAGTTGATGATCAGTGTCATGCTTTAGTTTTGCTTTATCTAATTGCTTTATTTAATTTATCATGACATTTCATCTGTAATCTTTGCTTCTGAGTGTTCCTTTTATTTTGAAGGGCTTTACAAAGTAGCATAGTGAATATTTCTAAATAATGTTTTGCTTACGAGATTTGAAATGAAACTCAATAAGAATTATAGGCAAGGACAACTACGACCTTACTTGAACAAGATTTATTCCGTAGGTTGTACAACTGTTTCCTTTTAAGTTCTAATACTTATAGGCAATGACCGCTGCTTCATCCTTCACAATTCTTCCTCTTCTTGGTGAATCAGAAATGTTGAGAAAGAGGAAAAGTGCAAAGTGGCAAAGATTCACTCGCCCACTAAACCACATCGAACAAAACCAAACTCATAAACTAAATAAATGGACATGAAAATTATTATGCTTCTGTTTTCTGTTTATAGTCTTTACCTTTCAAACTATTGATTCATGAGAAATGCAGTTTAGAACCTTACAATTTAACATTGAACTTATGATTCATGGATGTCATATCGAAATAACCTGAACTATGATTATTCCTTATTTGACATGCACAGACCAACTACTGGATTTGGAGGATTGATCCAACCTATAGAACTCAAGATCCCCAAAGGGTAGCAAGATTTGATTTTGATTTTTCCAATGATATGCTTGTTCATTTGTTGTTAAAAAAACATGAAACATTCTTCATAATTGTTTATGCAACAGTACTGCTTCAGTCCACTTTGGTTGGCTTTTGCCATTCTCATAGGAGGTCTCCTACTAGATATTCTCATATCAATCACCCTCGGTGTTTCCGCATTGCCTGTAAATATCATCATCGGTACGTTTTCGTCGATCGATACCGAGCTATACTTCTTGTTTCTTGTCGAGATATTTATGGTTAGTGAAACTCTGAAGAACAGGAGTTATTGTGGTGCTTGGACTTGGAACTGTGTTTCGACTTGCTTTGGAGTTCTTTCAGGAGTGGAATTCAGCAAGAGGATCACAAAGGGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAG ATGAACCTTTGGATGGATTGCCATTCAAATGATGTAAAGGCCAAGCCCGGCGGGAATCAGAGCAATGAAGGCGACCTTGAGAAGCAGAGAGTTGCTCAACCATCATCATCAGCATTAGAGCTCTCTACCAGAGATGGTGATGATAATACACTCTTAACCATTGTTGTTTCTACAGGGGAGTCTAAACCAACCTCTGAGGTTCCTGGTCCTGGGACTCTTCGCTCTCAAGAAGAAGGGATATTGGCTTGTGCAGTTTCCCCAAAAAAGGAGCTCTTGTCTACTACTTCTGGTTCTGATGAGCAGTGCAGAATTTGTCAGCAAGAGAAGGAGGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGCGGTCTCGCAAAAGCTCATCGGACTTGTATAGATACTTGGTTTCGTACTAAAGGATCAAACAGATGTGAGATATGCCAGGTTGTAGCGGCAAATGTATCATCTCCACAGTCACATCATGGTACCAACTACTGGATTTGGAGGATTGATCCAACCTATAGAACTCAAGATCCCCAAAGGTACTGCTTCAGTCCACTTTGGTTGGCTTTTGCCATTCTCATAGGAGGTCTCCTACTAGATATTCTCATATCAATCACCCTCGGTGTTTCCGCATTGCCTGTAAATATCATCATCGGAGTTATTGTGGTGCTTGGACTTGGAACTGTGTTTCGACTTGCTTTGGAGTTCTTTCAGGAGTGGAATTCAGCAAGAGGATCACAAAGGGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAG ATGAACCTTTGGATGGATTGCCATTCAAATGATGTAAAGGCCAAGCCCGGCGGGAATCAGAGCAATGAAGGCGACCTTGAGAAGCAGAGAGTTGCTCAACCATCATCATCAGCATTAGAGCTCTCTACCAGAGATGGTGATGATAATACACTCTTAACCATTGTTGTTTCTACAGGGGAGTCTAAACCAACCTCTGAGGTTCCTGGTCCTGGGACTCTTCGCTCTCAAGAAGAAGGGATATTGGCTTGTGCAGTTTCCCCAAAAAAGGAGCTCTTGTCTACTACTTCTGGTTCTGATGAGCAGTGCAGAATTTGTCAGCAAGAGAAGGAGGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGCGGTCTCGCAAAAGCTCATCGGACTTGTATAGATACTTGGTTTCGTACTAAAGGATCAAACAGATGTGAGATATGCCAGGTTGTAGCGGCAAATGTATCATCTCCACAGTCACATCATGGTACCAACTACTGGATTTGGAGGATTGATCCAACCTATAGAACTCAAGATCCCCAAAGGTACTGCTTCAGTCCACTTTGGTTGGCTTTTGCCATTCTCATAGGAGGTCTCCTACTAGATATTCTCATATCAATCACCCTCGGTGTTTCCGCATTGCCTGTAAATATCATCATCGGAGTTATTGTGGTGCTTGGACTTGGAACTGTGTTTCGACTTGCTTTGGAGTTCTTTCAGGAGTGGAATTCAGCAAGAGGATCACAAAGGGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAG MNLWMDCHSNDVKAKPGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGESKPTSEVPGPGTLRSQEEGILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHCRGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSSPQSHHGTNYWIWRIDPTYRTQDPQRYCFSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSARGSQRVESNVTIGYFPAI* Homology
BLAST of Chy9G170660 vs. ExPASy TrEMBL
Match: A0A0A0KQJ1 (RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G146840 PE=4 SV=1) HSP 1 Score: 515.0 bits (1325), Expect = 1.8e-142 Identity = 257/262 (98.09%), Postives = 258/262 (98.47%), Query Frame = 0
BLAST of Chy9G170660 vs. ExPASy TrEMBL
Match: A0A1S3AU35 (E3 ubiquitin-protein ligase MARCH2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482880 PE=4 SV=1) HSP 1 Score: 486.5 bits (1251), Expect = 7.0e-134 Identity = 247/262 (94.27%), Postives = 247/262 (94.27%), Query Frame = 0
BLAST of Chy9G170660 vs. ExPASy TrEMBL
Match: A0A5A7TM25 (E3 ubiquitin-protein ligase MARCH2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001330 PE=4 SV=1) HSP 1 Score: 482.3 bits (1240), Expect = 1.3e-132 Identity = 247/263 (93.92%), Postives = 247/263 (93.92%), Query Frame = 0
BLAST of Chy9G170660 vs. ExPASy TrEMBL
Match: A0A1S3AU77 (E3 ubiquitin-protein ligase MARCH2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482880 PE=4 SV=1) HSP 1 Score: 481.9 bits (1239), Expect = 1.7e-132 Identity = 247/263 (93.92%), Postives = 247/263 (93.92%), Query Frame = 0
BLAST of Chy9G170660 vs. ExPASy TrEMBL
Match: A0A1S4E4V2 (E3 ubiquitin-protein ligase MARCH9 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103482880 PE=4 SV=1) HSP 1 Score: 429.9 bits (1104), Expect = 7.8e-117 Identity = 228/262 (87.02%), Postives = 229/262 (87.40%), Query Frame = 0
BLAST of Chy9G170660 vs. NCBI nr
Match: XP_004145881.1 (E3 ubiquitin-protein ligase MARCH2 [Cucumis sativus] >XP_031742128.1 E3 ubiquitin-protein ligase MARCH2 [Cucumis sativus] >KGN49961.1 hypothetical protein Csa_000267 [Cucumis sativus]) HSP 1 Score: 513 bits (1320), Expect = 4.79e-183 Identity = 257/262 (98.09%), Postives = 258/262 (98.47%), Query Frame = 0
BLAST of Chy9G170660 vs. NCBI nr
Match: XP_008437468.1 (PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X2 [Cucumis melo]) HSP 1 Score: 484 bits (1246), Expect = 8.81e-172 Identity = 247/262 (94.27%), Postives = 247/262 (94.27%), Query Frame = 0
BLAST of Chy9G170660 vs. NCBI nr
Match: KAA0042631.1 (E3 ubiquitin-protein ligase MARCH2 isoform X1 [Cucumis melo var. makuwa] >TYK06032.1 E3 ubiquitin-protein ligase MARCH2 isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 480 bits (1235), Expect = 4.34e-170 Identity = 247/263 (93.92%), Postives = 247/263 (93.92%), Query Frame = 0
BLAST of Chy9G170660 vs. NCBI nr
Match: XP_008437466.1 (PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X1 [Cucumis melo] >XP_016903259.1 PREDICTED: E3 ubiquitin-protein ligase MARCH2 isoform X1 [Cucumis melo]) HSP 1 Score: 479 bits (1234), Expect = 6.16e-170 Identity = 247/263 (93.92%), Postives = 247/263 (93.92%), Query Frame = 0
BLAST of Chy9G170660 vs. NCBI nr
Match: XP_038875309.1 (E3 ubiquitin-protein ligase MARCHF2 isoform X4 [Benincasa hispida]) HSP 1 Score: 475 bits (1222), Expect = 3.59e-168 Identity = 240/257 (93.39%), Postives = 245/257 (95.33%), Query Frame = 0
BLAST of Chy9G170660 vs. TAIR 10
Match: AT2G45530.1 (RING/U-box superfamily protein ) HSP 1 Score: 262.7 bits (670), Expect = 3.2e-70 Identity = 143/251 (56.97%), Postives = 175/251 (69.72%), Query Frame = 0
BLAST of Chy9G170660 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 68.2 bits (165), Expect = 1.2e-11 Identity = 33/72 (45.83%), Postives = 40/72 (55.56%), Query Frame = 0
BLAST of Chy9G170660 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 65.1 bits (157), Expect = 9.7e-11 Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 0
BLAST of Chy9G170660 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 61.6 bits (148), Expect = 1.1e-09 Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 0
BLAST of Chy9G170660 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein ) HSP 1 Score: 57.8 bits (138), Expect = 1.6e-08 Identity = 29/72 (40.28%), Postives = 37/72 (51.39%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|