Chy9G165290 (gene) Cucumber (hystrix) v1

Overview


Name	Chy9G165290
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	RNA-dependent RNA polymerase
Location	chrH09: 10861159 .. 10862504 (+)
RNA-Seq Expression	Chy9G165290
Synteny	Chy9G165290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGACGATCGAAATTTACGGATTTCGGCCCAAGGTGACCGTCGACGAGGTGAAGGAATTTCTCGAGAATCACACTGGAGATGGAACTGTATCATCGGTGAGGATTTCGAAACCCAAAGACGAAAAAGCCCGGTTCACATCTGTGACTGTCCTGTTCAAGAGCAAACTAGCAGCTGAGTACATAGTGGCGAAGTCGACAACGGAGGAGAGGAAACTGTGGTTCGAAAGTTCATATCTGAAAGCCAGAGAATTGGAGAAGGCGGTAGTGGCGAAGGCAACGAGCGGTGTTCTCGAAATGGAGAGAATGGAAGACGTGAAGGGGCACTTGGGAAGCATGATTTCGAAGGGGAAAATGAGAGTGATTTGGGAAGGAGAGAAATGGAGTGTGGAATTTGGAAATGGATTTAGGAAATTATGGTTTTATTTGAGTTATGAAGTTGATGAGTACAAATGGAGCTTTGTTTTGAGAATATTTTGAGTGTTGAGTTTCGTTGCCCTCCCAATCAACCTTCCAAGTTTTTTCTGATTCAGGTTTCTTCTCTCTTTTTTCTTTCTTTTCTTTTTTCATTACTTAAATTCAATTGAAAACAAAATATATATGATCTCCATGCATGTTAATGTGAGTGTTATTTAGGTTTGTTATATTATATTGAATTTTGTTTGAATTGTGTGCAGTTGCAGGGTGCTCCACGAATTTTCAGGAAAGCTCCATCATCTTCTTCCTCACCATTATATTCCGACGAATCCACTAGTTTTCGTTGGATTAGGGATGTGGATTTCACTCCATCTTCCTGCATTGGACAATCCTTTACTATATGCCTCCAACTTTCTCCTTCTCATCACCTTCCTCCTTTCTTCCAAACATTGGTCGGCTACAAAGAAACCTATGCTCCATTCATTCTCCATAAAGGTTCTTCTCTCGTTTCAAATTCAAATTTGGTTCCTATCATTACTCCACCCCAAGCCTTCGATATCTCTTACAAAATTTTGTTCAAAATCAATGCCCTCCTTCAACATGGTTATCTTTCTGGACCGACGCTAGATGATGAATTCTTTCGACTTGTTGATTCAAGTAGATTTCATCTTTACTACATTGAGCATGCCTTAGAAAAATTGTTAAATTTGAAGGAATGCTGTTATAAACCACAAAAGTGGCTCAAAGACCAATATCTTTCATACTACATCTCTAATCAGCTTCCATGGAAACCTAATATTTCTCTAGAGGATGGCCTAGTGTATGTGCATAGAGTTCAAATTACACCGTTGAAAGTGTACTTCTGTGGTCCGGAGGCCAATCTTTCTAATAGAGTAGTCCGTGGTCGTGTTTTATGTGGTGTATAG

mRNA sequence

ATGGGAAAGACGATCGAAATTTACGGATTTCGGCCCAAGGTGACCGTCGACGAGGTGAAGGAATTTCTCGAGAATCACACTGGAGATGGAACTGTATCATCGGTGAGGATTTCGAAACCCAAAGACGAAAAAGCCCGGTTCACATCTGTGACTGTCCTGTTCAAGAGCAAACTAGCAGCTGAGTACATAGTGGCGAAGTCGACAACGGAGGAGAGGAAACTGTGGTTCGAAAGTTCATATCTGAAAGCCAGAGAATTGGAGAAGGCGGTAGTGGCGAAGGCAACGAGCGGTGTTCTCGAAATGGAGAGAATGGAAGACGTGAAGGGGCACTTGGGAAGCATGATTTCGAAGGGGAAAATGAGATTGCAGGGTGCTCCACGAATTTTCAGGAAAGCTCCATCATCTTCTTCCTCACCATTATATTCCGACGAATCCACTAGTTTTCGTTGGATTAGGGATGTGGATTTCACTCCATCTTCCTGCATTGGACAATCCTTTACTATATGCCTCCAACTTTCTCCTTCTCATCACCTTCCTCCTTTCTTCCAAACATTGGTCGGCTACAAAGAAACCTATGCTCCATTCATTCTCCATAAAGGTTCTTCTCTCGTTTCAAATTCAAATTTGGTTCCTATCATTACTCCACCCCAAGCCTTCGATATCTCTTACAAAATTTTGTTCAAAATCAATGCCCTCCTTCAACATGGTTATCTTTCTGGACCGACGCTAGATGATGAATTCTTTCGACTTGTTGATTCAAGTAGATTTCATCTTTACTACATTGAGCATGCCTTAGAAAAATTGTTAAATTTGAAGGAATGCTGTTATAAACCACAAAAGTGGCTCAAAGACCAATATCTTTCATACTACATCTCTAATCAGCTTCCATGGAAACCTAATATTTCTCTAGAGGATGGCCTAGTGTATGTGCATAGAGTTCAAATTACACCGTTGAAAGTGTACTTCTGTGGTCCGGAGGCCAATCTTTCTAATAGAGTAGTCCGTGGTCGTGTTTTATGTGGTGTATAG

Coding sequence (CDS)

ATGGGAAAGACGATCGAAATTTACGGATTTCGGCCCAAGGTGACCGTCGACGAGGTGAAGGAATTTCTCGAGAATCACACTGGAGATGGAACTGTATCATCGGTGAGGATTTCGAAACCCAAAGACGAAAAAGCCCGGTTCACATCTGTGACTGTCCTGTTCAAGAGCAAACTAGCAGCTGAGTACATAGTGGCGAAGTCGACAACGGAGGAGAGGAAACTGTGGTTCGAAAGTTCATATCTGAAAGCCAGAGAATTGGAGAAGGCGGTAGTGGCGAAGGCAACGAGCGGTGTTCTCGAAATGGAGAGAATGGAAGACGTGAAGGGGCACTTGGGAAGCATGATTTCGAAGGGGAAAATGAGATTGCAGGGTGCTCCACGAATTTTCAGGAAAGCTCCATCATCTTCTTCCTCACCATTATATTCCGACGAATCCACTAGTTTTCGTTGGATTAGGGATGTGGATTTCACTCCATCTTCCTGCATTGGACAATCCTTTACTATATGCCTCCAACTTTCTCCTTCTCATCACCTTCCTCCTTTCTTCCAAACATTGGTCGGCTACAAAGAAACCTATGCTCCATTCATTCTCCATAAAGGTTCTTCTCTCGTTTCAAATTCAAATTTGGTTCCTATCATTACTCCACCCCAAGCCTTCGATATCTCTTACAAAATTTTGTTCAAAATCAATGCCCTCCTTCAACATGGTTATCTTTCTGGACCGACGCTAGATGATGAATTCTTTCGACTTGTTGATTCAAGTAGATTTCATCTTTACTACATTGAGCATGCCTTAGAAAAATTGTTAAATTTGAAGGAATGCTGTTATAAACCACAAAAGTGGCTCAAAGACCAATATCTTTCATACTACATCTCTAATCAGCTTCCATGGAAACCTAATATTTCTCTAGAGGATGGCCTAGTGTATGTGCATAGAGTTCAAATTACACCGTTGAAAGTGTACTTCTGTGGTCCGGAGGCCAATCTTTCTAATAGAGTAGTCCGTGGTCGTGTTTTATGTGGTGTATAG

Protein sequence

MGKTIEIYGFRPKVTVDEVKEFLENHTGDGTVSSVRISKPKDEKARFTSVTVLFKSKLAAEYIVAKSTTEERKLWFESSYLKARELEKAVVAKATSGVLEMERMEDVKGHLGSMISKGKMRLQGAPRIFRKAPSSSSSPLYSDESTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQTLVGYKETYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHLYYIEHALEKLLNLKECCYKPQKWLKDQYLSYYISNQLPWKPNISLEDGLVYVHRVQITPLKVYFCGPEANLSNRVVRGRVLCGV*

Homology

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BLAST of Chy9G165290 vs. ExPASy Swiss-Prot
Match: Q9LQV2 (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 6.3e-63
Identity = 149/397 (37.53%), Postives = 213/397 (53.65%), Query Frame = 0


Query: 1   MGKTIEIYGFRPKVTVDEVKEFLENHTGDGTVSSVRISKPKDEKARFTSVTVLFKSKLAA 60
           MGKTI+++GF   V+ +EVK+FLE  TG GTV ++++ +PK    R  ++ V F S+   
Sbjct: 1   MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAI-VQFTSERHT 60

Query: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVAK-------------------ATSGVLEM 120
             I+   T    +L++  SYLKA E+E+ +V K                   +T   L +
Sbjct: 61  RLII---TAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTL 120

Query: 121 ERMEDV---------KGHLGSMISKGKMRLQ---------------------------GA 180
              +DV         K H      +   RL+                           GA
Sbjct: 121 WSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGA 180

Query: 181 PRIFRKAPSSSS-----SPLYSDESTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPP 240
           P+IF K     +        YSD S   +WIR  DFT SSCIGQS   CL+L    ++P 
Sbjct: 181 PKIFEKEDQPINLLFGIMDFYSDGSDE-QWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 240

Query: 241 FFQTLVGYKETYA-PFILHKGSSLVSNSN-LVPIITPPQAFDISYKILFKINALLQHGYL 300
           F +    Y E  A  F++  GSS  SN+N LVP++ PP  F + ++ILFK+N L+Q+  L
Sbjct: 241 FRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACL 300

Query: 301 SGPTLDDEFFRLVDSSRFHLYYIEHALEKLLNLKECCYKPQKWLKDQYLSYYISNQLPWK 336
           SGP LD +F+RL++  ++    I+H LEKL +L ECCY+P  WL+D+Y  +    +LP  
Sbjct: 301 SGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLS 360

[Close]

BLAST of Chy9G165290 vs. ExPASy Swiss-Prot
Match: Q7XM31 (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-16
Identity = 66/248 (26.61%), Postives = 121/248 (48.79%), Query Frame = 0


Query: 105 EDVKGHLG-SMISKGKMRLQ--GAPRIFRKAPSSSSSPLYSD-------ESTSFRWIRDV 164
           ED+K  LG ++   G + LQ   APRI       + +  + D       E   F W+R +
Sbjct: 162 EDMKDCLGCTLDGMGAILLQLNYAPRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRAL 221

Query: 165 DFTPSSCIGQSFTICLQLSPSHHLPPFFQTLVGYKETYAPFILHKGSSLVSNSNLVPIIT 224
           DFTP+   G+  T+ L+L  S  +    ++L  +        ++    + ++SN+VP++ 
Sbjct: 222 DFTPNYSFGRCSTLVLKLGKSALVSDILKSL-PFSGNLGELTMNSMDGVGASSNVVPLVH 281

Query: 225 PPQAFDISYKILFKINALLQHGYLSGPTLDDEFFRL-----VDSSRFHLYYIEHALEKLL 284
            P+ + + Y++LF++N+L+  G +    ++ + F+      VD SR          EK+ 
Sbjct: 282 CPRDYSVPYEVLFRLNSLMHMGKIVAKHVNADLFKALQELPVDVSR-------RIFEKMH 341

Query: 285 NLKECCYKPQKWLKDQYLSYYISNQ--LPWKPNISLEDGLVYVHRVQITPLKVYFCGPEA 336
            L+  CY P ++++ +  S   S+   L  +     E  L+  +RV ITP K++  GPE 
Sbjct: 342 KLESTCYGPLQFIQQEAYSMKRSHNVLLSNEGEGEGERKLMKCYRVNITPSKIFCFGPEE 401

[Close]

BLAST of Chy9G165290 vs. ExPASy Swiss-Prot
Match: Q9SG02 (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.0e-04
Identity = 47/195 (24.10%), Postives = 83/195 (42.56%), Query Frame = 0


Query: 150 WIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQTLVGY---------KETYAPFILHKG 209
           WIR  DFT    IG+  +  + +SP +      +T + Y         +  + P I ++ 
Sbjct: 250 WIRTTDFTQVGAIGRCHSYRVLISPRYENK--LRTALDYFRMRRVQEERVRWPPRIRNEP 309

Query: 210 SSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHLYY 269
                 S+    I   +   IS++I+F +N++L  G  +   L + FF L+ +    +  
Sbjct: 310 CFGEPVSDHFFCIHHKEG--ISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVNI 369

Query: 270 IEHALEKLLNLKECCYKPQKWLKDQYLSYYISNQLPWKPNISLEDGLVYVHRVQITPLKV 329
              +L+ L   K   +   K LK   +  +I        +    + +  + R+ ITP + 
Sbjct: 370 A--SLKHLCTYKRPVFDAYKRLK--LVQEWIQKNPKLLGSHEQSEDISEIRRLVITPTRA 429

Query: 330 YFCGPEANLSNRVVR 336
           Y   PE  LSNRV+R
Sbjct: 430 YCLPPEVELSNRVLR 436

[Close]

BLAST of Chy9G165290 vs. ExPASy TrEMBL
Match: A0A0A0KRH3 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G564290 PE=3 SV=1)

HSP 1 Score: 617.5 bits (1591), Expect = 3.4e-173
Identity = 318/393 (80.92%), Postives = 324/393 (82.44%), Query Frame = 0


Query: 1   MGKTIEIYGFRPKVTVDEVKEFLENHTGDGTVSSVRISKPKDEKARFTSVTVLFKSKLAA 60
           MGKTIEIYGFRP+VT DEVKEFLENHTGDGTVS+VRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1   MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVAKATSGVLEMERMEDVKGHLGSMISKGKM 120
           EYIVAKSTTEERKLWFESSYLKARELEKAVVAK T GVLEMERMEDVKGHLGSMIS GKM
Sbjct: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121 R----------------------------------------------------------L 180
           R                                                          L
Sbjct: 121 RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181 QGAPRIFRKAPSSSSSPLYSDESTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
           QGAPRIFRK PSSSSSPLYS++STSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181 QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241 QTLVGYKETYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
           QTLVGYK TYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241 QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301 LDDEFFRLVDSSRFHLYYIEHALEKLLNLKECCYKPQKWLKDQYLSYYISNQLPWKPNIS 336
           LDDEFFRLVDSSRFH  YI+HALEKL NLKECCYKPQKWLKDQYLSYY SNQLPWK NIS
Sbjct: 301 LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

[Close]

BLAST of Chy9G165290 vs. ExPASy TrEMBL
Match: A0A0S1YCZ4 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1c PE=2 SV=1)

HSP 1 Score: 616.7 bits (1589), Expect = 5.9e-173
Identity = 318/393 (80.92%), Postives = 323/393 (82.19%), Query Frame = 0


Query: 1   MGKTIEIYGFRPKVTVDEVKEFLENHTGDGTVSSVRISKPKDEKARFTSVTVLFKSKLAA 60
           MGKTIEIYGFRP+VT DEVKEFLENHTGDGTVS+VRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1   MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVAKATSGVLEMERMEDVKGHLGSMISKGKM 120
           EYIVAKSTTEERKLWFESSYLKARELEKAVVA  T GVLEMERMEDVKGHLGSMIS GKM
Sbjct: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121 R----------------------------------------------------------L 180
           R                                                          L
Sbjct: 121 RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181 QGAPRIFRKAPSSSSSPLYSDESTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
           QGAPRIFRK PSSSSSPLYS++STSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181 QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241 QTLVGYKETYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
           QTLVGYK TYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241 QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301 LDDEFFRLVDSSRFHLYYIEHALEKLLNLKECCYKPQKWLKDQYLSYYISNQLPWKPNIS 336
           LDDEFFRLVDSSRFH  YIEHALEKL NLKECCYKPQKWLKDQYLSYY SNQLPWK NIS
Sbjct: 301 LDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

[Close]

BLAST of Chy9G165290 vs. ExPASy TrEMBL
Match: A0A1D8RK46 (RNA-dependent RNA polymerase (Fragment) OS=Cucumis sativus OX=3659 GN=RDR1c2 PE=2 SV=1)

HSP 1 Score: 615.5 bits (1586), Expect = 1.3e-172
Identity = 317/393 (80.66%), Postives = 323/393 (82.19%), Query Frame = 0


Query: 1   MGKTIEIYGFRPKVTVDEVKEFLENHTGDGTVSSVRISKPKDEKARFTSVTVLFKSKLAA 60
           MGKTIEIYGFRP+VT DEVKEFLENHTGDGTVS+VRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1   MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVAKATSGVLEMERMEDVKGHLGSMISKGKM 120
           EYIVAKSTTEERKLWFESSYLKARELEKAVVA  T GVLEMERMEDVKGHLGSMIS GKM
Sbjct: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121 R----------------------------------------------------------L 180
           R                                                          L
Sbjct: 121 RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181 QGAPRIFRKAPSSSSSPLYSDESTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
           QGAPRIFRK PSSSSSPLYS++STSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181 QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241 QTLVGYKETYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
           QTLVGYK TYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241 QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301 LDDEFFRLVDSSRFHLYYIEHALEKLLNLKECCYKPQKWLKDQYLSYYISNQLPWKPNIS 336
           LDDEFFRLVDSSRFH  YI+HALEKL NLKECCYKPQKWLKDQYLSYY SNQLPWK NIS
Sbjct: 301 LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

[Close]

BLAST of Chy9G165290 vs. ExPASy TrEMBL
Match: A0A5D3E365 (RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00630 PE=3 SV=1)

HSP 1 Score: 613.6 bits (1581), Expect = 5.0e-172
Identity = 304/335 (90.75%), Postives = 316/335 (94.33%), Query Frame = 0


Query: 1   MGKTIEIYGFRPKVTVDEVKEFLENHTGDGTVSSVRISKPKDEKARFTSVTVLFKSKLAA 60
           MG+TIEIYGFRP+VTVDEVKEFLENHTGDGTVS+VRISKPKDEKARFTSVTV FKSKLAA
Sbjct: 1   MGRTIEIYGFRPEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVRFKSKLAA 60

Query: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVAKATSGVLEMERMEDVKGHLGSMISKGKM 120
           EYIVAK+TTEE+KLWFESSYLKARE+EK    KATSG  EMERMEDVKG LGSMISK KM
Sbjct: 61  EYIVAKATTEEKKLWFESSYLKAREVEK----KATSGGPEMERMEDVKGQLGSMISKDKM 120

Query: 121 RLQGAPRIFRKAPSSSSSPLYSDESTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPP 180
           R+QGAPRIFRK PSSSSSPLYS+ES SFRWIRDVDFTPSSCIGQSFT+CLQ SPSHHLPP
Sbjct: 121 RMQGAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPSSCIGQSFTLCLQFSPSHHLPP 180

Query: 181 FFQTLVGYKETYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSG 240
           FFQTLVGYK TYAPFIL KGSS VSNSNLVPIITPPQAFDISYKILFKINALLQ GYLSG
Sbjct: 181 FFQTLVGYKVTYAPFILRKGSSFVSNSNLVPIITPPQAFDISYKILFKINALLQRGYLSG 240

Query: 241 PTLDDEFFRLVDSSRFHLYYIEHALEKLLNLKECCYKPQKWLKDQYLSYYISNQLPWKPN 300
           PTLDDEFFRLVDSSRFH  YIEHALEKL NLKECCYKPQKWLKDQYLS+Y+SNQLPWKPN
Sbjct: 241 PTLDDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQKWLKDQYLSFYVSNQLPWKPN 300

Query: 301 ISLEDGLVYVHRVQITPLKVYFCGPEANLSNRVVR 336
           ISL+DGLVYVHRVQITPLKVYFCGPEANLSNRVVR
Sbjct: 301 ISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVR 331

[Close]

BLAST of Chy9G165290 vs. ExPASy TrEMBL
Match: A0A5A7TS25 (RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00650 PE=3 SV=1)

HSP 1 Score: 609.0 bits (1569), Expect = 1.2e-170
Identity = 302/335 (90.15%), Postives = 315/335 (94.03%), Query Frame = 0


Query: 1   MGKTIEIYGFRPKVTVDEVKEFLENHTGDGTVSSVRISKPKDEKARFTSVTVLFKSKLAA 60
           MG+TIEIYGFRP+VTVDEVKEFLENHTGDGTVS+VRISKPKDEKARFTSVTV FKSKLAA
Sbjct: 1   MGRTIEIYGFRPEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVRFKSKLAA 60

Query: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVAKATSGVLEMERMEDVKGHLGSMISKGKM 120
           EYIVAK+TTEE+KLWFESSYLKARE+EK    KATSG  EMERMEDVKG LGSMISK KM
Sbjct: 61  EYIVAKATTEEKKLWFESSYLKAREVEK----KATSGGPEMERMEDVKGQLGSMISKDKM 120

Query: 121 RLQGAPRIFRKAPSSSSSPLYSDESTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPP 180
           R+QGAPRIFRK PSSSSS LYS+ES SFRWIRDVDFTPSSCIGQSFT+CLQ SPSHHLPP
Sbjct: 121 RMQGAPRIFRKTPSSSSSSLYSNESNSFRWIRDVDFTPSSCIGQSFTLCLQFSPSHHLPP 180

Query: 181 FFQTLVGYKETYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSG 240
           FFQTLVGYK TYAPFIL KGSS VSNSNLVPIITPPQAFDISYKILFKINALLQ GYLSG
Sbjct: 181 FFQTLVGYKVTYAPFILRKGSSFVSNSNLVPIITPPQAFDISYKILFKINALLQRGYLSG 240

Query: 241 PTLDDEFFRLVDSSRFHLYYIEHALEKLLNLKECCYKPQKWLKDQYLSYYISNQLPWKPN 300
           PTLDDEFF+LVDSSRFH  YIEHALEKL NLKECCYKPQKWLKDQYLS+Y+SNQLPWKPN
Sbjct: 241 PTLDDEFFQLVDSSRFHPDYIEHALEKLFNLKECCYKPQKWLKDQYLSFYVSNQLPWKPN 300

Query: 301 ISLEDGLVYVHRVQITPLKVYFCGPEANLSNRVVR 336
           ISL+DGLVYVHRVQITPLKVYFCGPEANLSNRVVR
Sbjct: 301 ISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVR 331

[Close]

BLAST of Chy9G165290 vs. NCBI nr
Match: XP_031740912.1 (probable RNA-dependent RNA polymerase 1 [Cucumis sativus] >KGN52010.2 hypothetical protein Csa_008596 [Cucumis sativus])

HSP 1 Score: 622 bits (1604), Expect = 1.37e-212
Identity = 319/393 (81.17%), Postives = 324/393 (82.44%), Query Frame = 0


Query: 1   MGKTIEIYGFRPKVTVDEVKEFLENHTGDGTVSSVRISKPKDEKARFTSVTVLFKSKLAA 60
           MGKTIEIYGFRP+VT DEVKEFLENHTGDGTVS+VRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1   MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVAKATSGVLEMERMEDVKGHLGSMISKGKM 120
           EYIVAKSTTEERKLWFESSYLKARELEKAVVAK T GVLEMERMEDVKGHLGSMIS GKM
Sbjct: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121 R----------------------------------------------------------L 180
           R                                                          L
Sbjct: 121 RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181 QGAPRIFRKAPSSSSSPLYSDESTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
           QGAPRIFRK PSSSSSPLYS++STSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181 QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241 QTLVGYKETYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
           QTLVGYK TYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241 QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301 LDDEFFRLVDSSRFHLYYIEHALEKLLNLKECCYKPQKWLKDQYLSYYISNQLPWKPNIS 335
           LDDEFFRLVDSSRFH  YIEHALEKL NLKECCYKPQKWLKDQYLSYY SNQLPWK NIS
Sbjct: 301 LDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

[Close]

BLAST of Chy9G165290 vs. NCBI nr
Match: ALM88235.1 (RNA-dependent RNA polymerase 1c [Cucumis sativus])

HSP 1 Score: 620 bits (1599), Expect = 7.73e-212
Identity = 318/393 (80.92%), Postives = 323/393 (82.19%), Query Frame = 0


Query: 1   MGKTIEIYGFRPKVTVDEVKEFLENHTGDGTVSSVRISKPKDEKARFTSVTVLFKSKLAA 60
           MGKTIEIYGFRP+VT DEVKEFLENHTGDGTVS+VRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1   MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVAKATSGVLEMERMEDVKGHLGSMISKGKM 120
           EYIVAKSTTEERKLWFESSYLKARELEKAVVA  T GVLEMERMEDVKGHLGSMIS GKM
Sbjct: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121 R----------------------------------------------------------L 180
           R                                                          L
Sbjct: 121 RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181 QGAPRIFRKAPSSSSSPLYSDESTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
           QGAPRIFRK PSSSSSPLYS++STSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181 QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241 QTLVGYKETYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
           QTLVGYK TYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241 QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301 LDDEFFRLVDSSRFHLYYIEHALEKLLNLKECCYKPQKWLKDQYLSYYISNQLPWKPNIS 335
           LDDEFFRLVDSSRFH  YIEHALEKL NLKECCYKPQKWLKDQYLSYY SNQLPWK NIS
Sbjct: 301 LDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

[Close]

BLAST of Chy9G165290 vs. NCBI nr
Match: AOW73471.1 (RNA-dependent RNA polymerase 1c2, partial [Cucumis sativus])

HSP 1 Score: 619 bits (1596), Expect = 2.12e-211
Identity = 317/393 (80.66%), Postives = 323/393 (82.19%), Query Frame = 0


Query: 1   MGKTIEIYGFRPKVTVDEVKEFLENHTGDGTVSSVRISKPKDEKARFTSVTVLFKSKLAA 60
           MGKTIEIYGFRP+VT DEVKEFLENHTGDGTVS+VRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1   MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVAKATSGVLEMERMEDVKGHLGSMISKGKM 120
           EYIVAKSTTEERKLWFESSYLKARELEKAVVA  T GVLEMERMEDVKGHLGSMIS GKM
Sbjct: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121 R----------------------------------------------------------L 180
           R                                                          L
Sbjct: 121 RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181 QGAPRIFRKAPSSSSSPLYSDESTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
           QGAPRIFRK PSSSSSPLYS++STSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181 QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241 QTLVGYKETYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
           QTLVGYK TYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241 QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301 LDDEFFRLVDSSRFHLYYIEHALEKLLNLKECCYKPQKWLKDQYLSYYISNQLPWKPNIS 335
           LDDEFFRLVDSSRFH  YI+HALEKL NLKECCYKPQKWLKDQYLSYY SNQLPWK NIS
Sbjct: 301 LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

[Close]

BLAST of Chy9G165290 vs. NCBI nr
Match: KAE8648600.1 (hypothetical protein Csa_007966 [Cucumis sativus])

HSP 1 Score: 619 bits (1596), Expect = 2.12e-211
Identity = 317/393 (80.66%), Postives = 323/393 (82.19%), Query Frame = 0


Query: 1   MGKTIEIYGFRPKVTVDEVKEFLENHTGDGTVSSVRISKPKDEKARFTSVTVLFKSKLAA 60
           MGKTIEIYGFRP+VT DEVKEFLENHTGDGTVS+VRISKPKDEKARFTSVTVLFKSKLAA
Sbjct: 1   MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60

Query: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVAKATSGVLEMERMEDVKGHLGSMISKGKM 120
           EYIVAKSTTEERKLWFESSYLKARELEKAVVA  T GVLEMERMEDVKGHLGSMIS GKM
Sbjct: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120

Query: 121 R----------------------------------------------------------L 180
           R                                                          L
Sbjct: 121 RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180

Query: 181 QGAPRIFRKAPSSSSSPLYSDESTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
           QGAPRIFRK PSSSSSPLYS++STSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF
Sbjct: 181 QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240

Query: 241 QTLVGYKETYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
           QTLVGYK TYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT
Sbjct: 241 QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300

Query: 301 LDDEFFRLVDSSRFHLYYIEHALEKLLNLKECCYKPQKWLKDQYLSYYISNQLPWKPNIS 335
           LDDEFFRLVDSSRFH  YI+HALEKL NLKECCYKPQKWLKDQYLSYY SNQLPWK NIS
Sbjct: 301 LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360

[Close]

BLAST of Chy9G165290 vs. NCBI nr
Match: TYK30517.1 (putative RNA-dependent RNA polymerase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 617 bits (1591), Expect = 2.34e-211
Identity = 304/335 (90.75%), Postives = 316/335 (94.33%), Query Frame = 0


Query: 1   MGKTIEIYGFRPKVTVDEVKEFLENHTGDGTVSSVRISKPKDEKARFTSVTVLFKSKLAA 60
           MG+TIEIYGFRP+VTVDEVKEFLENHTGDGTVS+VRISKPKDEKARFTSVTV FKSKLAA
Sbjct: 1   MGRTIEIYGFRPEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVRFKSKLAA 60

Query: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVAKATSGVLEMERMEDVKGHLGSMISKGKM 120
           EYIVAK+TTEE+KLWFESSYLKARE+EK    KATSG  EMERMEDVKG LGSMISK KM
Sbjct: 61  EYIVAKATTEEKKLWFESSYLKAREVEK----KATSGGPEMERMEDVKGQLGSMISKDKM 120

Query: 121 RLQGAPRIFRKAPSSSSSPLYSDESTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPP 180
           R+QGAPRIFRK PSSSSSPLYS+ES SFRWIRDVDFTPSSCIGQSFT+CLQ SPSHHLPP
Sbjct: 121 RMQGAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPSSCIGQSFTLCLQFSPSHHLPP 180

Query: 181 FFQTLVGYKETYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSG 240
           FFQTLVGYK TYAPFIL KGSS VSNSNLVPIITPPQAFDISYKILFKINALLQ GYLSG
Sbjct: 181 FFQTLVGYKVTYAPFILRKGSSFVSNSNLVPIITPPQAFDISYKILFKINALLQRGYLSG 240

Query: 241 PTLDDEFFRLVDSSRFHLYYIEHALEKLLNLKECCYKPQKWLKDQYLSYYISNQLPWKPN 300
           PTLDDEFFRLVDSSRFH  YIEHALEKL NLKECCYKPQKWLKDQYLS+Y+SNQLPWKPN
Sbjct: 241 PTLDDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQKWLKDQYLSFYVSNQLPWKPN 300

Query: 301 ISLEDGLVYVHRVQITPLKVYFCGPEANLSNRVVR 335
           ISL+DGLVYVHRVQITPLKVYFCGPEANLSNRVVR
Sbjct: 301 ISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVR 331

[Close]

BLAST of Chy9G165290 vs. TAIR 10
Match: AT1G14790.1 (RNA-dependent RNA polymerase 1 )

HSP 1 Score: 242.7 bits (618), Expect = 4.4e-64
Identity = 149/397 (37.53%), Postives = 213/397 (53.65%), Query Frame = 0


Query: 1   MGKTIEIYGFRPKVTVDEVKEFLENHTGDGTVSSVRISKPKDEKARFTSVTVLFKSKLAA 60
           MGKTI+++GF   V+ +EVK+FLE  TG GTV ++++ +PK    R  ++ V F S+   
Sbjct: 1   MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAI-VQFTSERHT 60

Query: 61  EYIVAKSTTEERKLWFESSYLKARELEKAVVAK-------------------ATSGVLEM 120
             I+   T    +L++  SYLKA E+E+ +V K                   +T   L +
Sbjct: 61  RLII---TAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTL 120

Query: 121 ERMEDV---------KGHLGSMISKGKMRLQ---------------------------GA 180
              +DV         K H      +   RL+                           GA
Sbjct: 121 WSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGA 180

Query: 181 PRIFRKAPSSSS-----SPLYSDESTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPP 240
           P+IF K     +        YSD S   +WIR  DFT SSCIGQS   CL+L    ++P 
Sbjct: 181 PKIFEKEDQPINLLFGIMDFYSDGSDE-QWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 240

Query: 241 FFQTLVGYKETYA-PFILHKGSSLVSNSN-LVPIITPPQAFDISYKILFKINALLQHGYL 300
           F +    Y E  A  F++  GSS  SN+N LVP++ PP  F + ++ILFK+N L+Q+  L
Sbjct: 241 FRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACL 300

Query: 301 SGPTLDDEFFRLVDSSRFHLYYIEHALEKLLNLKECCYKPQKWLKDQYLSYYISNQLPWK 336
           SGP LD +F+RL++  ++    I+H LEKL +L ECCY+P  WL+D+Y  +    +LP  
Sbjct: 301 SGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLS 360

[Close]

BLAST of Chy9G165290 vs. TAIR 10
Match: AT3G49500.1 (RNA-dependent RNA polymerase 6 )

HSP 1 Score: 47.8 bits (112), Expect = 2.1e-05
Identity = 47/195 (24.10%), Postives = 83/195 (42.56%), Query Frame = 0


Query: 150 WIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFFQTLVGY---------KETYAPFILHKG 209
           WIR  DFT    IG+  +  + +SP +      +T + Y         +  + P I ++ 
Sbjct: 250 WIRTTDFTQVGAIGRCHSYRVLISPRYENK--LRTALDYFRMRRVQEERVRWPPRIRNEP 309

Query: 210 SSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPTLDDEFFRLVDSSRFHLYY 269
                 S+    I   +   IS++I+F +N++L  G  +   L + FF L+ +    +  
Sbjct: 310 CFGEPVSDHFFCIHHKEG--ISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVNI 369

Query: 270 IEHALEKLLNLKECCYKPQKWLKDQYLSYYISNQLPWKPNISLEDGLVYVHRVQITPLKV 329
              +L+ L   K   +   K LK   +  +I        +    + +  + R+ ITP + 
Sbjct: 370 A--SLKHLCTYKRPVFDAYKRLK--LVQEWIQKNPKLLGSHEQSEDISEIRRLVITPTRA 429

Query: 330 YFCGPEANLSNRVVR 336
           Y   PE  LSNRV+R
Sbjct: 430 YCLPPEVELSNRVLR 436

The following BLAST results are available for this feature:

BLAST of Chy9G165290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQV2	6.3e-63	37.53	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1	[more]
Q7XM31	1.2e-16	26.61	Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q9SG02	3.0e-04	24.10	RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1	[more]

BLAST of Chy9G165290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRH3	3.4e-173	80.92	RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G564290 PE=3 SV=...	[more]
A0A0S1YCZ4	5.9e-173	80.92	RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1c PE=2 SV=1	[more]
A0A1D8RK46	1.3e-172	80.66	RNA-dependent RNA polymerase (Fragment) OS=Cucumis sativus OX=3659 GN=RDR1c2 PE=...	[more]
A0A5D3E365	5.0e-172	90.75	RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7TS25	1.2e-170	90.15	RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]

BLAST of Chy9G165290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740912.1	1.37e-212	81.17	probable RNA-dependent RNA polymerase 1 [Cucumis sativus] >KGN52010.2 hypothetic...	[more]
ALM88235.1	7.73e-212	80.92	RNA-dependent RNA polymerase 1c [Cucumis sativus]	[more]
AOW73471.1	2.12e-211	80.66	RNA-dependent RNA polymerase 1c2, partial [Cucumis sativus]	[more]
KAE8648600.1	2.12e-211	80.66	hypothetical protein Csa_007966 [Cucumis sativus]	[more]
TYK30517.1	2.34e-211	90.75	putative RNA-dependent RNA polymerase 1 [Cucumis melo var. makuwa]	[more]

BLAST of Chy9G165290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14790.1	4.4e-64	37.53	RNA-dependent RNA polymerase 1	[more]
AT3G49500.1	2.1e-05	24.10	RNA-dependent RNA polymerase 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23079:SF38	RNA-DEPENDENT RNA POLYMERASE	coord: 121..335
None	No IPR available	PANTHER	PTHR23079:SF38	RNA-DEPENDENT RNA POLYMERASE	coord: 2..121
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PANTHER	PTHR23079	RNA-DEPENDENT RNA POLYMERASE	coord: 121..335
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PANTHER	PTHR23079	RNA-DEPENDENT RNA POLYMERASE	coord: 2..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy9G165290.1	Chy9G165290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0001172	transcription, RNA-templated
cellular_component	GO:0016020	membrane
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003968	RNA-directed 5'-3' RNA polymerase activity