Chy9G163750 (gene) Cucumber (hystrix) v1

Overview


Name	Chy9G163750
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH09: 8522434 .. 8523059 (+)
RNA-Seq Expression	Chy9G163750
Synteny	Chy9G163750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTTACTCATGGCCAGAGGAAGGAGTGAGAAAAAAAGCTGGAAAGGCAAAGAGAAGAGTTCCAGGTCGAAATCAAAGGGAAAAGGTAGAAAGTGTTTCTTATGTCATAAAGAAGGACACTTTAAGAAAAATTGTCCTTTGAATAAGAGCAAGGAAGCATCGAGTAGCCAGTATCCAGGTGAGACTAGTTCAGCAAATGTTATTGATGGGTATGATTCAGCTCAGGTCTTGATGGTGTCTCATAGGGATATTCAGGATGCTTGGATCATGGATTCAGGGTGCACATATCACATGACTCCTAATCGAGATTTTCTAATTAATTTTCAGAAAAATGATGGGGGAAAAGTCTTACTGGGTGATATGGTACCTGTGATGTAAAGGGAATTGGTTCAGTCCAAATTGCAACACATGACGAGATGATCAGAGTTCTCACTAATGTTAGATATGTTCCGGAACTCAAACGTAATCTAATATCTCTTGGTGATTTAGATAGATCAGGTTATACTTGTAAATCTGAGAATGGAGTTATGAAAATTACCAAGGGTTCTTTGGTTAAACTGAGGGGAACCTTGAGGAATGGTTTGTATGTGTTGGAAGGTACTGCAGTTTCAGGCAGTGCTG

mRNA sequence

ATGGAGAGTTACTCATGGCCAGAGGAAGGAGTGAGAAAAAAAGCTGGAAAGGCAAAGAGAAGAGTTCCAGGTCGAAATCAAAGGGAAAAGGTAGAAAGTGTTTCTTATGTCATAAAGAAGGACACTTTAAGAAAAATTGTCCTTTGAATAAGAGCAAGGAAGCATCGAGTAGCCAGTATCCAGGTGAGACTAGTTCAGCAAATGTTATTGATGGGTATGATTCAGCTCAGGTCTTGATGGTGTCTCATAGGGATATTCAGGATGCTTGGATCATGGATTCAGGTCTTACTGGGTGATATGGTACCTGTGATGTAAAGGGAATTGGTTCAGTCCAAATTGCAACACATGACGAGATGATCAGAGTTCTCACTAATGTTAGATATGTTCCGGAACTCAAACGTAATCTAATATCTCTTGGTGATTTAGATAGATCAGGTTATACTTGTAAATCTGAGAATGGAGTTATGAAAATTACCAAGGGTTCTTTGGTTAAACTGAGGGGAACCTTGAGGAATGGTTTGTATGTGTTGGAAGGTACTGCAGTTTCAGGCAGTGCTG

Coding sequence (CDS)

ATGGAGAGTTACTCATGGCCAGAGGAAGGAGTGAGAAAAAAAGCTGGAAAGGCAAAGAGAAGAGTTCCAGGTCGAAATCAAAGGGAAAAGGTAGAAAGTGTTTCTTATGTCATAAAGAAGGACACTTTAAGAAAAATTGTCCTTTGAATAAGAGCAAGGAAGCATCGAGTAGCCAGTATCCAGGTGAGACTAGTTCAGCAAATGTTATTGATGGGTATGATTCAGCTCAGGTCTTGATGGTGTCTCATAGGGATATTCAGGATGCTTGGATCATGGATTCAGGTCTTACTGGGTGATATGGTACCTGTGATGTAAAGGGAATTGGTTCAGTCCAAATTGCAACACATGACGAGATGATCAGAGTTCTCACTAATGTTAGATATGTTCCGGAACTCAAACGTAATCTAATATCTCTTGGTGATTTAGATAGATCAGGTTATACTTGTAAATCTGAGAATGGAGTTATGAAAATTACCAAGGGTTCTTTGGTTAAACTGAGGGGAACCTTGAGGAATGGTTTGTATGTGTTGGAAGGTACTGCAGTTTCAGGCAGTGCTG

Protein sequence

MESYSWPEEGVRKKAGKAKRRVPGRNQREKVESVSYVIKKDTLRKIVL*IRARKHRVASIQVRLVQQMLLMGMIQLRS*WCLIGIFRMLGSWIQVLLGDMVPVM*RELVQSKLQHMTR*SEFSLMLDMFRNSNVI*YLLVI*IDQVILVNLRMEL*KLPRVLWLN*GEP*GMVCMCWKVLQFQAVL

Homology

[Close]

BLAST of Chy9G163750 vs. NCBI nr
Match: KGN51025.2 (hypothetical protein Csa_023133, partial [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.31e-16
Identity = 52/94 (55.32%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 1  MESYSWPEEGVRKKAGKAKRRVPGRNQREKVESVSYVIKKDTLRKIVL*IRARKHRVASI 60
          ME+YSWPEEGVRK  GKAKRRVP +NQ EKVESVSYVIK DTLRK     +++K   +  
Sbjct: 1  MENYSWPEEGVRKGVGKAKRRVPNQNQGEKVESVSYVIKNDTLRKNCPLNKSKKASSSQY 60

Query: 61 QVRLVQQMLLMGMIQLRS*WCLIGIFRMLGSWIQ 94
                  +  G         LIGI RMLGSWIQ
Sbjct: 61 ATETSAANVTDGCDSTEVLMGLIGILRMLGSWIQ 94

The following BLAST results are available for this feature:

BLAST of Chy9G163750 vs.


Match Name	E-value	Identity	Description

BLAST of Chy9G163750 vs.


Match Name	E-value	Identity	Description

BLAST of Chy9G163750 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51025.2	1.31e-16	55.32	hypothetical protein Csa_023133, partial [Cucumis sativus]	[more]

BLAST of Chy9G163750 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy9G163750.1	Chy9G163750.1	mRNA