Chy9G160020 (gene) Cucumber (hystrix) v1

Overview


Name	Chy9G160020
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	CLAVATA3/ESR (CLE)-related protein 25
Location	chrH09: 2400906 .. 2402009 (+)
RNA-Seq Expression	Chy9G160020
Synteny	Chy9G160020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTAAGTGTAGTTTTTTGAAGTCTCTGTTTGGAGCTTTTCTCTTTCTTGGTATCATTTGGTTCTCTTTTATTGGAGTGATTGATAATGCTAGCCTAGCATCCAGAAGAGAGACAGACATGCAGTGGAAGCTAATTGGAAGAGAGAAGCATTTCTTTCATTGGCATTCTGATTTTTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGTACTCAATTCTTGCTTCTTCTAATTTACTACTACATTTACACATATGTTTACCTAATTTTTCCTTTTTTCATAAGTGTCTCTTTTTCTTTCTTTTATCTTTAATCTACTAAACTTGGTTGTTTGTGAGTTTTACGATATCTCTACAATTCTACAAATTTGTATCATATATAATCTTGTTCTCAGAAAAGGAAAATTAACACAAAGAACTTGACTACCCAAACTTCAATTAGACAGAAGATAAATGGAATGAGAATTCATTAGTAAATTTATCTAACTGTTACACTATTGCTTTTATCTCTTCCAATAGTCGTTATTAGTTTCCTCTTTATGTACTACAAATTGTTAAGCATGGAACAGAATTCAGCTTCAGATTCAACCATTTGAACATTTCAAAATAGAGTAATGCTCTGCCCTCTACACAGTTTGCTTACTTTTCTTTTATTCGGTTTTGGCAACTTGAGTTAGTAAAAAGAGAAGCAGGAAACTGTTTCAATTGAGATTTGTTGAAGTTGATGACAGTCTCACTTTTTTTTTTCTTTCCAAAATAAAAGCGAACGAAAAAAGAACAAAACTTCTTTTTTATCACCCTTTCTCTTATTTTTATGAGCCATTAAAGGCATTGGGGCAAGATCTTGACCACTTTAGTCCATAAGCTTGAGATTATAGATATAGGTAAATTACATAACAACATTTGTTTCTCTTTGCTACAAAACCATAATTAACTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATTTATATATATTTAAGATTGCCTAATGAATTTTATTGCTTATATAAATGTGATTTCAGGAGAGTTGAGAATTCTAGACAACCACCAATTCGAGTCTAA

mRNA sequence

ATGGAGAGTAAGTGTAGTTTTTTGAAGTCTCTGTTTGGAGCTTTTCTCTTTCTTGGTATCATTTGGTTCTCTTTTATTGGAGTGATTGATAATGCTAGCCTAGCATCCAGAAGAGAGACAGACATGCAGTGGAAGCTAATTGGAAGAGAGAAGCATTTCTTTCATTGGCATTCTGATTTTTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGAGAGTTGAGAATTCTAGACAACCACCAATTCGAGTCTAA

Coding sequence (CDS)

ATGGAGAGTAAGTGTAGTTTTTTGAAGTCTCTGTTTGGAGCTTTTCTCTTTCTTGGTATCATTTGGTTCTCTTTTATTGGAGTGATTGATAATGCTAGCCTAGCATCCAGAAGAGAGACAGACATGCAGTGGAAGCTAATTGGAAGAGAGAAGCATTTCTTTCATTGGCATTCTGATTTTTATTCTGTCAGCAAGAGAAGAGTACCAAATGGACCTGATCCAATCCATAACAGGAGAGTTGAGAATTCTAGACAACCACCAATTCGAGTCTAA

Protein sequence

MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDFYSVSKRRVPNGPDPIHNRRVENSRQPPIRV*

Homology

[Close]

BLAST of Chy9G160020 vs. ExPASy Swiss-Prot
Match: Q8LFL4 (CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-09
Identity = 33/81 (40.74%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 8  LKSLFGAFLFLGIIWFSFIGVIDN-ASLASRRETDMQWKLIGREKHFFHWHSDFYSVSKR 67
          +++L G    LG+I F  +G++ N A      E     +  G++ + FH       VSKR
Sbjct: 6  IRALVGVIASLGLIVFLLVGILANSAPSVPSSENVKTLRFSGKDVNLFH-------VSKR 65

Query: 68 RVPNGPDPIHNRRVENSRQPP 88
          +VPNGPDPIHNR+ E SR+PP
Sbjct: 66 KVPNGPDPIHNRKAETSRRPP 79

[Close]

BLAST of Chy9G160020 vs. ExPASy TrEMBL
Match: A0A0A0KS32 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633230 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.6e-45
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60
          MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF
Sbjct: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIRV 91
          YSVSKRRVPNGPDPIHNRRVENSRQPPIRV
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIRV 90

[Close]

BLAST of Chy9G160020 vs. ExPASy TrEMBL
Match: A0A6J1HAQ4 (uncharacterized protein LOC111461653 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461653 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.1e-25
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 27  GVIDNASLASRRETDMQWKLIGREKHFFHWHSDFYSVSKRRVPNGPDPIHNRRVENSRQP 86
           G IDNAS ASRR TDMQWK+IG EKH FHWHSDFYSVSKRRVPNGPDPIHNRRVENS+QP
Sbjct: 50  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 109

Query: 87  PIR 90
           P+R
Sbjct: 110 PVR 112

[Close]

BLAST of Chy9G160020 vs. ExPASy TrEMBL
Match: A0A6J1HAS8 (uncharacterized protein LOC111461653 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461653 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.1e-25
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 27  GVIDNASLASRRETDMQWKLIGREKHFFHWHSDFYSVSKRRVPNGPDPIHNRRVENSRQP 86
           G IDNAS ASRR TDMQWK+IG EKH FHWHSDFYSVSKRRVPNGPDPIHNRRVENS+QP
Sbjct: 50  GGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSKQP 109

Query: 87  PIR 90
           P+R
Sbjct: 110 PVR 112

[Close]

BLAST of Chy9G160020 vs. ExPASy TrEMBL
Match: A0A5A7T759 (CLAVATA3/ESR (CLE)-related protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1582G00030 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 9.9e-19
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 0


Query: 34 LASRRETDMQWKLIGREKHFFHWHSDFYSVSKRRVPNGPDPIHNR 79
          LASRRETDMQWKLIG+EKHFFHWHSDFYSVSKRRVPNGPDPIHNR
Sbjct: 25 LASRRETDMQWKLIGKEKHFFHWHSDFYSVSKRRVPNGPDPIHNR 69

[Close]

BLAST of Chy9G160020 vs. ExPASy TrEMBL
Match: A0A6J5WYJ6 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23893 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.4e-18
Identity = 51/95 (53.68%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNAS------LASRRETDMQWKLIGREKHFF 60
          MES    L++LFGA L LG+ WF   G++ N S        S  +    WKLIGREKH  
Sbjct: 1  MESDRKVLRTLFGALLLLGVFWFFLAGILVNRSTEKSTVTVSSTKMFKHWKLIGREKHAV 60

Query: 61 HWHSDFYSVSKRRVPNGPDPIHNRRVENSRQPPIR 90
           W S F  VSKRRVPNGPDPIHNRR   +RQPP R
Sbjct: 61 VWDSSFIYVSKRRVPNGPDPIHNRRAVKTRQPPTR 95

[Close]

BLAST of Chy9G160020 vs. NCBI nr
Match: KGN52425.1 (hypothetical protein Csa_008367 [Cucumis sativus])

HSP 1 Score: 192 bits (488), Expect = 8.14e-62
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60
          MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF
Sbjct: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIRV 90
          YSVSKRRVPNGPDPIHNRRVENSRQPPIRV
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIRV 90

[Close]

BLAST of Chy9G160020 vs. NCBI nr
Match: KAG6578608.1 (CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167 bits (423), Expect = 6.76e-52
Identity = 77/90 (85.56%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60
          M S C FLKSLFGAFLFLG+IWFSFIGVIDNAS ASRR TD+QWK+IGR KH FHWHSDF
Sbjct: 1  MVSNCRFLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIRV 90
          YSVSKRRVPNGPDPIHNRRV NS+QPPIR 
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVGNSKQPPIRA 90

[Close]

BLAST of Chy9G160020 vs. NCBI nr
Match: KAG7033147.1 (CLAVATA3/ESR (CLE)-related protein 25 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163 bits (412), Expect = 3.22e-50
Identity = 74/90 (82.22%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 1  MESKCSFLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDF 60
          ME  C F + LFG FLFLGIIWFSFIG IDNAS ASRR TDMQWK+IG EKH FHWHSDF
Sbjct: 1  MEPNCRFFRLLFGVFLFLGIIWFSFIGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDF 60

Query: 61 YSVSKRRVPNGPDPIHNRRVENSRQPPIRV 90
          YSVSKRRVPNGPDPIHNRRVENS+QPP+R 
Sbjct: 61 YSVSKRRVPNGPDPIHNRRVENSKQPPVRA 90

[Close]

BLAST of Chy9G160020 vs. NCBI nr
Match: KAG7016157.1 (ylbH, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140 bits (353), Expect = 6.18e-38
Identity = 64/71 (90.14%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 7   FLKSLFGAFLFLGIIWFSFIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDFYSVSKR 66
           FLKSLFGAFLFLG+IWFSFIGVIDNAS ASRR TD+QWK+IGR KH FHWHSDFYSVSKR
Sbjct: 307 FLKSLFGAFLFLGVIWFSFIGVIDNASPASRRATDVQWKMIGRGKHVFHWHSDFYSVSKR 366

Query: 67  RVPNGPDPIHN 77
           RVPNGPDPIHN
Sbjct: 367 RVPNGPDPIHN 377

[Close]

BLAST of Chy9G160020 vs. NCBI nr
Match: KAG6602472.1 (CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126 bits (317), Expect = 3.27e-35
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 25  FIGVIDNASLASRRETDMQWKLIGREKHFFHWHSDFYSVSKRRVPNGPDPIHNRRVENSR 84
           + G IDNAS ASRR TDMQWK+IG EKH FHWHSDFYSVSKRRVPNGPDPIHNRRVENS+
Sbjct: 65  YFGGIDNASPASRRATDMQWKVIGSEKHVFHWHSDFYSVSKRRVPNGPDPIHNRRVENSK 124

Query: 85  QPPIRV 90
           QPP+R 
Sbjct: 125 QPPVRA 130

[Close]

BLAST of Chy9G160020 vs. TAIR 10
Match: AT3G28455.1 (CLAVATA3/ESR-RELATED 25 )

HSP 1 Score: 62.0 bits (149), Expect = 2.9e-10
Identity = 33/81 (40.74%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 8  LKSLFGAFLFLGIIWFSFIGVIDN-ASLASRRETDMQWKLIGREKHFFHWHSDFYSVSKR 67
          +++L G    LG+I F  +G++ N A      E     +  G++ + FH       VSKR
Sbjct: 6  IRALVGVIASLGLIVFLLVGILANSAPSVPSSENVKTLRFSGKDVNLFH-------VSKR 65

Query: 68 RVPNGPDPIHNRRVENSRQPP 88
          +VPNGPDPIHNR+ E SR+PP
Sbjct: 66 KVPNGPDPIHNRKAETSRRPP 79

[Close]

BLAST of Chy9G160020 vs. TAIR 10
Match: AT1G69970.2 (CLAVATA3/ESR-RELATED 26 )

HSP 1 Score: 48.5 bits (114), Expect = 3.3e-06
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 0


Query: 61  YSVSKRRVPNGPDPIHNRRVENSRQPPIR 90
           Y  SKR+VP GPDPIHNRR  NSR+PP R
Sbjct: 73  YVASKRKVPRGPDPIHNRRAGNSRRPPGR 101

The following BLAST results are available for this feature:

BLAST of Chy9G160020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFL4	4.0e-09	40.74	CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana OX=3702 GN=CLE25 P...	[more]

BLAST of Chy9G160020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS32	1.6e-45	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633230 PE=4 SV=1	[more]
A0A6J1HAQ4	4.1e-25	87.30	uncharacterized protein LOC111461653 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HAS8	4.1e-25	87.30	uncharacterized protein LOC111461653 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7T759	9.9e-19	97.78	CLAVATA3/ESR (CLE)-related protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J5WYJ6	6.4e-18	53.68	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23893 PE=4 S...	[more]

BLAST of Chy9G160020 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52425.1	8.14e-62	100.00	hypothetical protein Csa_008367 [Cucumis sativus]	[more]
KAG6578608.1	6.76e-52	85.56	CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7033147.1	3.22e-50	82.22	CLAVATA3/ESR (CLE)-related protein 25 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG7016157.1	6.18e-38	90.14	ylbH, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6602472.1	3.27e-35	83.33	CLAVATA3/ESR (CLE)-related protein 25, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of Chy9G160020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G28455.1	2.9e-10	40.74	CLAVATA3/ESR-RELATED 25	[more]
AT1G69970.2	3.3e-06	72.41	CLAVATA3/ESR-RELATED 26	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..90
None	No IPR available	PANTHER	PTHR34277:SF18	CLAVATA3/ESR (CLE)-RELATED PROTEIN 25	coord: 1..89
IPR039316	CLAVATA3/ESR (CLE)-related protein 25/26	PANTHER	PTHR34277	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy9G160020.1	Chy9G160020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0016021	integral component of membrane