Chy9G158580 (gene) Cucumber (hystrix) v1

Overview
NameChy9G158580
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH09: 1205909 .. 1206464 (-)
RNA-Seq ExpressionChy9G158580
SyntenyChy9G158580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAACTTTCAGTTGAGTTTAGCAATTGCTGAAGCCACAAATGCCCTTATGCATGCTGTAGCAACTGTAACTTCTGTAAATAATAATCAATTAGCTAGTGCTTTTCAATCATCTGTGGAAGCTGATGCTTGTGTCGATATTGCCACAGAAGCTTCCAACAATGTAATTGCTGCTATGCCTAACACTGCGGATGCCTCTCTTGCGATGGCTGCAGCATCACTGGCTACAGCAGCTTCCCATATTGCCTCAGCAGCGGTTAACGCTGCTAATGTCGCTCAAGCTCCTAACCTGAATCAAGCCGAGGATGAAGATGCCGCTCAAGCTGTTGATCTTAACCAAGCTGGAGTTGCAGATGTCGCTCATGGTGTTGATCAAAATGTCGCTCAAGCTGGTGTTGATGAAGATGAAAATCCTCGTATTCAGATGCTTCGTGAACACCTGGGAGCTGATCCCCTAGCTGATGTCCACTTCTGTCATTGTCATCATTCAAATTGTGATACTAGAATATGTGGATGTAAAAAAATATTAAAACGCTGCACCACCGATTGTAGCT

mRNA sequence

ATGGCTAACTTTCAGTTGAGTTTAGCAATTGCTGAAGCCACAAATGCCCTTATGCATGCTGTAGCAACTGTAACTTCTGTAAATAATAATCAATTAGCTAGTGCTTTTCAATCATCTGTGGAAGCTGATGCTTGTGTCGATATTGCCACAGAAGCTTCCAACAATGTAATTGCTGCTATGCCTAACACTGCGGATGCCTCTCTTGCGATGGCTGCAGCATCACTGGCTACAGCAGCTTCCCATATTGCCTCAGCAGCGGTTAACGCTGCTAATGTCGCTCAAGCTCCTAACCTGAATCAAGCCGAGGATGAAGATGCCGCTCAAGCTGTTGATCTTAACCAAGCTGGAGTTGCAGATGTCGCTCATGGTGTTGATCAAAATGTCGCTCAAGCTGGTGTTGATGAAGATGAAAATCCTCGTATTCAGATGCTTCGTGAACACCTGGGAGCTGATCCCCTAGCTGATGTCCACTTCTGTCATTGTCATCATTCAAATTGTGATACTAGAATATGTGGATGTAAAAAAATATTAAAACGCTGCACCACCGATTGTAGCT

Coding sequence (CDS)

ATGGCTAACTTTCAGTTGAGTTTAGCAATTGCTGAAGCCACAAATGCCCTTATGCATGCTGTAGCAACTGTAACTTCTGTAAATAATAATCAATTAGCTAGTGCTTTTCAATCATCTGTGGAAGCTGATGCTTGTGTCGATATTGCCACAGAAGCTTCCAACAATGTAATTGCTGCTATGCCTAACACTGCGGATGCCTCTCTTGCGATGGCTGCAGCATCACTGGCTACAGCAGCTTCCCATATTGCCTCAGCAGCGGTTAACGCTGCTAATGTCGCTCAAGCTCCTAACCTGAATCAAGCCGAGGATGAAGATGCCGCTCAAGCTGTTGATCTTAACCAAGCTGGAGTTGCAGATGTCGCTCATGGTGTTGATCAAAATGTCGCTCAAGCTGGTGTTGATGAAGATGAAAATCCTCGTATTCAGATGCTTCGTGAACACCTGGGAGCTGATCCCCTAGCTGATGTCCACTTCTGTCATTGTCATCATTCAAATTGTGATACTAGAATATGTGGATGTAAAAAAATATTAAAACGCTGCACCACCGATTGTAGCT

Protein sequence

MANFQLSLAIAEATNALMHAVATVTSVNNNQLASAFQSSVEADACVDIATEASNNVIAAMPNTADASLAMAAASLATAASHIASAAVNAANVAQAPNLNQAEDEDAAQAVDLNQAGVADVAHGVDQNVAQAGVDEDENPRIQMLREHLGADPLADVHFCHCHHSNCDTRICGCKKILKRCTTDCSX
Homology
BLAST of Chy9G158580 vs. ExPASy TrEMBL
Match: A0A5A7T7D4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001880 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 4.0e-43
Identity = 116/185 (62.70%), Postives = 134/185 (72.43%), Query Frame = 0

Query: 1   MANFQLSLAIAEATNALMHAVATVTSVNNNQLASAFQSSVEADACVDIATEASNNVIAAM 60
           MAN QL +AIA+ATNALMHAVA V+SVNNNQLASAF+SSVEADA   +ATEASNNVIAA+
Sbjct: 1   MANLQLGIAIAQATNALMHAVAAVSSVNNNQLASAFESSVEADASAALATEASNNVIAAV 60

Query: 61  PNTADASLAMAAASLATAASHIASAAVNAANVAQAPNLNQAEDEDAAQAVDLNQAGVADV 120
           PNTADASLAMAAASLA AASHIA+AAVN AN AQ  +LNQA D++ AQ VDL+QAG    
Sbjct: 61  PNTADASLAMAAASLAAAASHIATAAVNGANAAQVDDLNQAGDQNVAQGVDLHQAG---- 120

Query: 121 AHGVDQNVAQAGVDEDENPRIQMLREHLGADPLADVHFCHCHHSNCDTRICGCKKILKRC 180
               DQNVAQA      N  ++ + ++L  D     H C C  S C  + CGC +  KRC
Sbjct: 121 ----DQNVAQA-----VNDNLEQMHQNLNVD---GAHRCSCSKSTCVNKRCGCVRSNKRC 169

Query: 181 TTDCS 186
           T DCS
Sbjct: 181 TNDCS 169

BLAST of Chy9G158580 vs. ExPASy TrEMBL
Match: A0A0A0LKZ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G236110 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.5e-10
Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = 0

Query: 3   NFQLSLAIAEATNALMHAVATVTSVNNNQLASAFQSSVEADACVDIATEASNNVIAAMPN 62
           N  L +AI + TN L+H VA V+  NNNQL +AF +SV+  A   +AT+ASNNVI  M N
Sbjct: 20  NSYLGIAIVQVTNVLIHVVAIVSYANNNQLGNAF-ASVKTGANAGLATKASNNVIVVMSN 79

Query: 63  TADASLAMAAASLATAASHIASAAVNAANVAQAPNLNQAEDEDA 107
           T +ASL MAA  LA   S+I   A+N  NV QA ++N AE+EDA
Sbjct: 80  TVNASLVMAATLLAATISYIV-IAINGDNVPQADDMNHAENEDA 121

BLAST of Chy9G158580 vs. ExPASy TrEMBL
Match: A0A5D3BMS9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001900 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.6e-05
Identity = 50/131 (38.17%), Postives = 63/131 (48.09%), Query Frame = 0

Query: 1   MANFQLSLAIAEATNALMHAVATVTSVNNNQLASAFQSSVEADACVDIATEASNNVIAAM 60
           MAN QL +AI +AT+ALMH VA    +NNNQLA+ F S VE DA V++            
Sbjct: 28  MANLQLGIAIVQATSALMHVVAVY--LNNNQLANIFASYVEVDASVELCHR--------- 87

Query: 61  PNTADASLAMAAASLATAASHIASAAVNAANVAQAPNLNQAEDEDAAQAVDLNQAGVADV 120
                                            Q+ +LNQAEDED AQA+DLN+A     
Sbjct: 88  ------------------------------GYQQSDDLNQAEDEDVAQAIDLNRA----- 109

Query: 121 AHGVDQNVAQA 132
              VD++VAQA
Sbjct: 148 ---VDEDVAQA 109

BLAST of Chy9G158580 vs. NCBI nr
Match: KAA0039384.1 (hypothetical protein E6C27_scaffold64G001870 [Cucumis melo var. makuwa] >TYK00572.1 hypothetical protein E5676_scaffold169G001880 [Cucumis melo var. makuwa])

HSP 1 Score: 181 bits (460), Expect = 1.18e-54
Identity = 116/185 (62.70%), Postives = 134/185 (72.43%), Query Frame = 0

Query: 1   MANFQLSLAIAEATNALMHAVATVTSVNNNQLASAFQSSVEADACVDIATEASNNVIAAM 60
           MAN QL +AIA+ATNALMHAVA V+SVNNNQLASAF+SSVEADA   +ATEASNNVIAA+
Sbjct: 1   MANLQLGIAIAQATNALMHAVAAVSSVNNNQLASAFESSVEADASAALATEASNNVIAAV 60

Query: 61  PNTADASLAMAAASLATAASHIASAAVNAANVAQAPNLNQAEDEDAAQAVDLNQAGVADV 120
           PNTADASLAMAAASLA AASHIA+AAVN AN AQ  +LNQA D++ AQ VDL+QAG    
Sbjct: 61  PNTADASLAMAAASLAAAASHIATAAVNGANAAQVDDLNQAGDQNVAQGVDLHQAG---- 120

Query: 121 AHGVDQNVAQAGVDEDENPRIQMLREHLGADPLADVHFCHCHHSNCDTRICGCKKILKRC 180
               DQNVAQA      N  ++ + ++L  D     H C C  S C  + CGC +  KRC
Sbjct: 121 ----DQNVAQA-----VNDNLEQMHQNLNVD---GAHRCSCSKSTCVNKRCGCVRSNKRC 169

Query: 181 TTDCS 185
           T DCS
Sbjct: 181 TNDCS 169

BLAST of Chy9G158580 vs. NCBI nr
Match: KAA0039386.1 (hypothetical protein E6C27_scaffold64G001890 [Cucumis melo var. makuwa] >TYK00574.1 hypothetical protein E5676_scaffold169G001900 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 2.99e-07
Identity = 50/131 (38.17%), Postives = 63/131 (48.09%), Query Frame = 0

Query: 1   MANFQLSLAIAEATNALMHAVATVTSVNNNQLASAFQSSVEADACVDIATEASNNVIAAM 60
           MAN QL +AI +AT+ALMH VA    +NNNQLA+ F S VE DA V++            
Sbjct: 28  MANLQLGIAIVQATSALMHVVAVY--LNNNQLANIFASYVEVDASVELCHR--------- 87

Query: 61  PNTADASLAMAAASLATAASHIASAAVNAANVAQAPNLNQAEDEDAAQAVDLNQAGVADV 120
                                            Q+ +LNQAEDED AQA+DLN+A     
Sbjct: 88  ------------------------------GYQQSDDLNQAEDEDVAQAIDLNRA----- 109

Query: 121 AHGVDQNVAQA 131
              VD++VAQA
Sbjct: 148 ---VDEDVAQA 109

BLAST of Chy9G158580 vs. NCBI nr
Match: KAE8651857.1 (hypothetical protein Csa_023625, partial [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 3.72e-07
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 0

Query: 24  VTSVNNNQLASAFQSSVEADACVDIATEASNNVIAAMPNTADASLAMAAASLATAASHIA 83
           V+  NNNQL +AF +SV+  A   +AT+ASNNVI  M NT +ASL MAA  LA   S+I 
Sbjct: 2   VSYANNNQLGNAF-ASVKTGANAGLATKASNNVIVVMSNTVNASLVMAATLLAATISYIV 61

Query: 84  SAAVNAANVAQAPNLNQAEDEDA 106
            A +N  NV QA ++N AE+EDA
Sbjct: 62  IA-INGDNVPQADDMNHAENEDA 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T7D44.0e-4362.70Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LKZ84.5e-1051.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G236110 PE=4 SV=1[more]
A0A5D3BMS92.6e-0538.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0039384.11.18e-5462.70hypothetical protein E6C27_scaffold64G001870 [Cucumis melo var. makuwa] >TYK0057... [more]
KAA0039386.12.99e-0738.17hypothetical protein E6C27_scaffold64G001890 [Cucumis melo var. makuwa] >TYK0057... [more]
KAE8651857.13.72e-0753.01hypothetical protein Csa_023625, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy9G158580.1Chy9G158580.1mRNA