Chy8G154230 (gene) Cucumber (hystrix) v1

Overview
NameChy8G154230
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH08: 15754540 .. 15754912 (+)
RNA-Seq ExpressionChy8G154230
SyntenyChy8G154230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATCGTCAACTTTATGACAACTATGGTCTTCCTCTATCTCCTTGCTGCTACCCCTTCGATGTCTTCTTCTGAAGGTATTATTCATGCATGATGATATTTTTAAATTAGAATGAGTTATAATATAGTTTGAATTTGAAATTGAATTTTGTTGTTGTGTAGGTGGATCATCTGAAAGCAATAATGGTGGGATAGATGATGTTGTTTATGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATATCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCATCATCATCAACTTCTTCAACCCAAACAACCTGATTCTCTCAATAATCCTATTCCTCATCCATAA

mRNA sequence

ATGGAGATCGTCAACTTTATGACAACTATGGTCTTCCTCTATCTCCTTGCTGCTACCCCTTCGATGTCTTCTTCTGAAGGTGGATCATCTGAAAGCAATAATGGTGGGATAGATGATGTTGTTTATGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATATCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCATCATCATCAACTTCTTCAACCCAAACAACCTGATTCTCTCAATAATCCTATTCCTCATCCATAA

Coding sequence (CDS)

ATGGAGATCGTCAACTTTATGACAACTATGGTCTTCCTCTATCTCCTTGCTGCTACCCCTTCGATGTCTTCTTCTGAAGGTGGATCATCTGAAAGCAATAATGGTGGGATAGATGATGTTGTTTATGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATATCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCATCATCATCAACTTCTTCAACCCAAACAACCTGATTCTCTCAATAATCCTATTCCTCATCCATAA

Protein sequence

MEIVNFMTTMVFLYLLAATPSMSSSEGGSSESNNGGIDDVVYEIDYRGPETHSSHHISPPDHSHGRRPWIIHHHHHHQLLQPKQPDSLNNPIPHP*
Homology
BLAST of Chy8G154230 vs. ExPASy TrEMBL
Match: A0A0A0KIB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444970 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.5e-36
Identity = 80/95 (84.21%), Postives = 89/95 (93.68%), Query Frame = 0

Query: 1  MEIVNFMTTMVFLYLLAATPSMSSSEGGSSESNNGGIDDVVYEIDYRGPETHSSHHISPP 60
          MEIVNFMTTM FL+LLAATPS+SSS+G +SE++NGGIDD+VYEIDYRGPETHSSHHISPP
Sbjct: 1  MEIVNFMTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60

Query: 61 DHSHGRRPWIIHHHHHHQLLQPKQPDSLNNPIPHP 96
          DHSHGRRPWII HHH HQLLQPKQP+SL +P PHP
Sbjct: 61 DHSHGRRPWII-HHHRHQLLQPKQPNSL-DPTPHP 93

BLAST of Chy8G154230 vs. ExPASy TrEMBL
Match: A0A5A7U1B9 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00720 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.7e-32
Identity = 80/104 (76.92%), Postives = 83/104 (79.81%), Query Frame = 0

Query: 1   MEIVNFMTTMVFLYLLAATPSMSSSEGGSSESNNGGID-----------DVVYEIDYRGP 60
           MEIVNFMTTM FL+LL ATPSM+SSEGGSSE NNGGID           D VYEIDYRGP
Sbjct: 1   MEIVNFMTTMFFLFLL-ATPSMASSEGGSSEYNNGGIDDDDSSSSSRRYDSVYEIDYRGP 60

Query: 61  ETHSSHHISPPDHSHGRRPWIIHHHHHHQLLQPKQPDSLNNPIP 94
           ETHSSHHISPPDHSHGRRPWII HHHHHQLLQPKQ  +  NP P
Sbjct: 61  ETHSSHHISPPDHSHGRRPWII-HHHHHQLLQPKQQTNSLNPTP 102

BLAST of Chy8G154230 vs. ExPASy TrEMBL
Match: A0A6J1IQ06 (uncharacterized protein LOC111478885 OS=Cucurbita maxima OX=3661 GN=LOC111478885 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 50/76 (65.79%), Postives = 56/76 (73.68%), Query Frame = 0

Query: 4  VNFMTTMVFLYLLAATPSM---SSSEGGSSESNNGGI-DDVVYEIDYRGPETHSSHHISP 63
          ++F TT+ FL+LL  TPS    SSSEGG   S NGG+    VYEIDYRGPETHSS HISP
Sbjct: 3  MSFTTTVFFLFLL-LTPSFCCCSSSEGG---SENGGLGSSQVYEIDYRGPETHSS-HISP 62

Query: 64 PDHSHGRRPWIIHHHH 76
          P  SHG RPWI+HHHH
Sbjct: 63 PHPSHG-RPWIVHHHH 72

BLAST of Chy8G154230 vs. ExPASy TrEMBL
Match: A0A6J1CPX6 (uncharacterized protein LOC111013652 OS=Momordica charantia OX=3673 GN=LOC111013652 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.8e-11
Identity = 48/83 (57.83%), Postives = 55/83 (66.27%), Query Frame = 0

Query: 1  MEIVN-FMTTMVFLYLLAATPSMSSSEGGSSESNNGGIDDVVYEIDYRGPETHSSHHISP 60
          MEI +  + T  FL+L+ ATPS+SSS+GG SE+    I   VYEIDYRGPETHSSH   P
Sbjct: 1  MEITSPIIITFFFLFLILATPSISSSKGG-SENGAMEISSEVYEIDYRGPETHSSHFSPP 60

Query: 61 PDHSHGRRPWIIHHHHHHQLLQP 83
            HSHG RPWIIHH      L P
Sbjct: 61 DHHSHG-RPWIIHHQPKLHSLNP 81

BLAST of Chy8G154230 vs. ExPASy TrEMBL
Match: A0A6J1EDR4 (uncharacterized protein LOC111433241 OS=Cucurbita moschata OX=3662 GN=LOC111433241 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.1e-11
Identity = 47/75 (62.67%), Postives = 54/75 (72.00%), Query Frame = 0

Query: 4  VNFMTTMVFLYLLAATPSM---SSSEGGSSESNNGGIDDVVYEIDYRGPETHSSHHISPP 63
          ++F TT+ F++LL  TPS    SS EGG SE+   G    VYEIDYRGPETHSS HISPP
Sbjct: 3  MSFTTTVFFIFLL-LTPSFCCCSSYEGG-SENGGMGSSSEVYEIDYRGPETHSS-HISPP 62

Query: 64 DHSHGRRPWIIHHHH 76
           HSHG RPWI+HH H
Sbjct: 63 HHSHG-RPWIVHHRH 73

BLAST of Chy8G154230 vs. NCBI nr
Match: KGN48132.1 (hypothetical protein Csa_003970 [Cucumis sativus])

HSP 1 Score: 162 bits (409), Expect = 1.25e-49
Identity = 80/95 (84.21%), Postives = 89/95 (93.68%), Query Frame = 0

Query: 1  MEIVNFMTTMVFLYLLAATPSMSSSEGGSSESNNGGIDDVVYEIDYRGPETHSSHHISPP 60
          MEIVNFMTTM FL+LLAATPS+SSS+G +SE++NGGIDD+VYEIDYRGPETHSSHHISPP
Sbjct: 1  MEIVNFMTTMFFLFLLAATPSLSSSKGRASENSNGGIDDIVYEIDYRGPETHSSHHISPP 60

Query: 61 DHSHGRRPWIIHHHHHHQLLQPKQPDSLNNPIPHP 95
          DHSHGRRPWIIHHH H QLLQPKQP+SL+ P PHP
Sbjct: 61 DHSHGRRPWIIHHHRH-QLLQPKQPNSLD-PTPHP 93

BLAST of Chy8G154230 vs. NCBI nr
Match: KAA0047279.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 148 bits (373), Expect = 5.22e-44
Identity = 80/104 (76.92%), Postives = 83/104 (79.81%), Query Frame = 0

Query: 1   MEIVNFMTTMVFLYLLAATPSMSSSEGGSSESNNGGIDD-----------VVYEIDYRGP 60
           MEIVNFMTTM FL+LLA TPSM+SSEGGSSE NNGGIDD            VYEIDYRGP
Sbjct: 1   MEIVNFMTTMFFLFLLA-TPSMASSEGGSSEYNNGGIDDDDSSSSSRRYDSVYEIDYRGP 60

Query: 61  ETHSSHHISPPDHSHGRRPWIIHHHHHHQLLQPKQPDSLNNPIP 93
           ETHSSHHISPPDHSHGRRPWIIHHHHH QLLQPKQ  +  NP P
Sbjct: 61  ETHSSHHISPPDHSHGRRPWIIHHHHH-QLLQPKQQTNSLNPTP 102

BLAST of Chy8G154230 vs. NCBI nr
Match: XP_038881428.1 (uncharacterized protein LOC120072958 [Benincasa hispida])

HSP 1 Score: 92.4 bits (228), Expect = 5.87e-22
Identity = 61/100 (61.00%), Postives = 69/100 (69.00%), Query Frame = 0

Query: 1  MEIVNFMTTMVFLYLLAATPSMSSSEGGSSESNNGGID-------DVVYEIDYRGPETHS 60
          ME+++FMT M FL+LLA TPS+SS +GGS    NG +D         VYEIDYRGPETHS
Sbjct: 1  MEMISFMT-MFFLFLLA-TPSLSSPKGGSE---NGEMDFSSSSSSSEVYEIDYRGPETHS 60

Query: 61 SHHISPPDHSHGRRPWIIHHHHHHQLLQPKQPDSLNNPIP 93
          SH ISPPDHSHGR PWI HH  H   LQPKQP    +P P
Sbjct: 61 SH-ISPPDHSHGR-PWINHHDQH--QLQPKQPPFKPDPYP 91

BLAST of Chy8G154230 vs. NCBI nr
Match: XP_022143835.1 (uncharacterized protein LOC111013652 [Momordica charantia])

HSP 1 Score: 79.7 bits (195), Expect = 5.10e-17
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 0

Query: 9  TMVFLYLLAATPSMSSSEGGSSESNNGGIDDVVYEIDYRGPETHSSHHISPPDH-SHGRR 68
          T  FL+L+ ATPS+SSS+GGS E+    I   VYEIDYRGPETHSSH  SPPDH SHGR 
Sbjct: 10 TFFFLFLILATPSISSSKGGS-ENGAMEISSEVYEIDYRGPETHSSH-FSPPDHHSHGR- 69

Query: 69 PWIIHH 73
          PWIIHH
Sbjct: 70 PWIIHH 72

BLAST of Chy8G154230 vs. NCBI nr
Match: XP_022979166.1 (uncharacterized protein LOC111478885 [Cucurbita maxima])

HSP 1 Score: 79.3 bits (194), Expect = 6.00e-17
Identity = 50/75 (66.67%), Postives = 55/75 (73.33%), Query Frame = 0

Query: 5  NFMTTMVFLYLLAATPSM---SSSEGGSSESNNGGI-DDVVYEIDYRGPETHSSHHISPP 64
          +F TT+ FL+LL  TPS    SSSEGGS    NGG+    VYEIDYRGPETHSSH ISPP
Sbjct: 4  SFTTTVFFLFLLL-TPSFCCCSSSEGGSE---NGGLGSSQVYEIDYRGPETHSSH-ISPP 63

Query: 65 DHSHGRRPWIIHHHH 75
            SHGR PWI+HHHH
Sbjct: 64 HPSHGR-PWIVHHHH 72

BLAST of Chy8G154230 vs. TAIR 10
Match: AT5G03120.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-05
Identity = 29/67 (43.28%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 7  MTTMVFLYLLAATPSMSSSEGGSSESNNGGIDDVVYEIDYRGPETHSSHHISPPDHSHGR 66
          M   + +YLL A P  +    GS ++     D  VYEIDYRGPETH+S    PP+  HG+
Sbjct: 6  MMIFLIIYLLIAVPCFAK---GSEQT-----DSEVYEIDYRGPETHNSR--PPPETMHGK 62

Query: 67 RPWIIHH 74
           P+I H+
Sbjct: 66 PPYIHHN 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KIB61.5e-3684.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444970 PE=4 SV=1[more]
A0A5A7U1B91.7e-3276.92Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A6J1IQ061.2e-1165.79uncharacterized protein LOC111478885 OS=Cucurbita maxima OX=3661 GN=LOC111478885... [more]
A0A6J1CPX62.8e-1157.83uncharacterized protein LOC111013652 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1EDR46.1e-1162.67uncharacterized protein LOC111433241 OS=Cucurbita moschata OX=3662 GN=LOC1114332... [more]
Match NameE-valueIdentityDescription
KGN48132.11.25e-4984.21hypothetical protein Csa_003970 [Cucumis sativus][more]
KAA0047279.15.22e-4476.92putative transmembrane protein [Cucumis melo var. makuwa][more]
XP_038881428.15.87e-2261.00uncharacterized protein LOC120072958 [Benincasa hispida][more]
XP_022143835.15.10e-1769.70uncharacterized protein LOC111013652 [Momordica charantia][more]
XP_022979166.16.00e-1766.67uncharacterized protein LOC111478885 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT5G03120.11.0e-0543.28unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy8G154230.1Chy8G154230.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane