Chy8G153570 (gene) Cucumber (hystrix) v1

Overview
NameChy8G153570
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionmetallothionein 1C
LocationchrH08: 15235496 .. 15236731 (-)
RNA-Seq ExpressionChy8G153570
SyntenyChy8G153570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGAAATCAGTAAGCTTTGAGTTATCGACAAGAAATTCAAAAGAAAATCTAAAGTTTCTAATTTTAATTTACTTCAAAACAAAAATGGCAAACTGTCCCTGTGGCTCAGCCTGCAACTGCACTCCCAACAACTGCACGTAAGTCTCTTCTCTTTCTTTCTCCACAACTAAACAAAATGTCTGTTTGTTTCTTCGGAATTTGAGAACTTTTTTTCGTTTTTTATACAGTTCCTTCTTTCTTTTGTTGTTTCTGATAAAATCAGGAAGTTGATTGATTTTTTTTCTTCTTTAATTGCAGATGCAACCATAATGTTGCTTCCATGAAAGAGTACGAACTTCCCATCATCATCTTTTCTTTCTGTTTATTTTCCATATATATTAATTAACTAACTAAAATATAATACTACCGTTAACTTAATTAATTATTTCATTCTTAAAGAAGAAAAAAAGTAATTATTCTAATATCTTTATAATCATGAAATATATCTTTCATTTGTTTAGACAAAAAGAAAATCACTAAAAAATTTGAAGAATTTCATGTCAGAGATGTATACGATCAAATATATTGGTAATATATAATGCAAACCCTAACCTTTCAAAATTGAATATCAACTTAAATTTGTTATGATTATTTTTATTTATCAAATCATTTAAATTAGACTATATTCCTCTAAGAAATTCTTCCTAAATATACACGAAATGAAAAACGTGAATAGAGACTAAAACGACGGTAAACCATTTGAATTCTCTAATTTTTATTAATCACTTTATTTAAAGGAAGTCGTATACGCAATTTAAAATCCACGATGTTAATAAATTTGAACTGTTTTTGACAAACAGAAACTTGGAAGGTAACTGTGGCTGCAACAAATGCTCATGCGGAGACAATTGCAGCTGCAATCCATGCAACTGCTAAATTTCAAAGCTTTCGATATGGAAAGCATACTTAATTTACATATTAATGTGCTTCTAATGATTTGAATTATGTATGAAAATGGTTGTGTGTGTGTGTATAATGTTGTTTGTCTGTAAGGTGTTTGACAAAATGCCGCTTACAAATACTTGAGAAATAAAATACCACACAACCTATTATTATACACTTGTATCTTGTTTTTCCCCCTTCCAATGTCATTTCAAATAGACCAGTTATGACTGGTTGATTTCTATTACTACTTTGCATCTATGGTGTTGGATTTGGATGGGCTCTTGTTTCTAATTTTATCTTTTATATTTAACT

mRNA sequence

TGGAAATCAGTAAGCTTTGAGTTATCGACAAGAAATTCAAAAGAAAATCTAAAGTTTCTAATTTTAATTTACTTCAAAACAAAAATGGCAAACTGTCCCTGTGGCTCAGCCTGCAACTGCACTCCCAACAACTGCACATGCAACCATAATGTTGCTTCCATGAAAGAAAACTTGGAAGGTAACTGTGGCTGCAACAAATGCTCATGCGGAGACAATTGCAGCTGCAATCCATGCAACTGCTAAATTTCAAAGCTTTCGATATGGAAAGCATACTTAATTTACATATTAATGTGCTTCTAATGATTTGAATTATGTATGAAAATGGTTGTGTGTGTGTGTATAATGTTGTTTGTCTGTAAGGTGTTTGACAAAATGCCGCTTACAAATACTTGAGAAATAAAATACCACACAACCTATTATTATACACTTGTATCTTGTTTTTCCCCCTTCCAATGTCATTTCAAATAGACCAGTTATGACTGGTTGATTTCTATTACTACTTTGCATCTATGGTGTTGGATTTGGATGGGCTCTTGTTTCTAATTTTATCTTTTATATTTAACT

Coding sequence (CDS)

TGGAAATCAGTAAGCTTTGAGTTATCGACAAGAAATTCAAAAGAAAATCTAAAGTTTCTAATTTTAATTTACTTCAAAACAAAAATGGCAAACTGTCCCTGTGGCTCAGCCTGCAACTGCACTCCCAACAACTGCACATGCAACCATAATGTTGCTTCCATGAAAGAAAACTTGGAAGGTAACTGTGGCTGCAACAAATGCTCATGCGGAGACAATTGCAGCTGCAATCCATGCAACTGCTAAATTTCAAAGCTTTCGATATGGAAAGCATACTTAATTTACATATTAATGTGCTTCTAATGATTTGAATTATGTATGAAAATGGTTGTGTGTGTGTGTATAATGTTGTTTGTCTGTAAGGTGTTTGACAAAATGCCGCTTACAAATACTTGAGAAATAAAATACCACACAACCTATTATTATACACTTGTATCTTGTTTTTCCCCCTTCCAATGTCATTTCAAATAGACCAGTTATGACTGGTTGATTTCTATTACTACTTTGCATCTATGGTGTTGGATTTGGATGGGCTCTTGTTTCTAATTTTATCTTTTATATTTAACT

Protein sequence

WKSVSFELSTRNSKENLKFLILIYFKTKMANCPCGSACNCTPNNCTCNHNVASMKENLEGNCGCNKCSCGDNCSCNPCNC*ISKLSIWKAYLIYILMCF**FELCMKMVVCVCIMLFVCKVFDKMPLTNT*EIKYHTTYYYTLVSCFSPFQCHFK*TSYDWLISITTLHLWCWIWMGSCF*FYLLYLT
Homology
[Close]
BLAST of Chy8G153570 vs. ExPASy TrEMBL
Match: A0A6J1HPV6 (uncharacterized protein LOC111466261 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466261 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-08
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 26  KTKMANCPCGSACNCTPNNCTCNHNVAS-MKENLEGNCGCNKCSCGDNCSCNPCNC 81
           + KM  C CGSACNC  NNC+C H+ A  MK+NL G      C CG NCSC+PCNC
Sbjct: 50  RRKMPKCGCGSACNCDLNNCSCKHDAAPIMKQNLSGG-----CKCGANCSCDPCNC 100

[Close]
BLAST of Chy8G153570 vs. ExPASy TrEMBL
Match: A0A6J1HS62 (uncharacterized protein LOC111466261 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466261 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.2e-07
Identity = 30/57 (52.63%), Postives = 36/57 (63.16%), Query Frame = 0 

Query: 26  KTKMANCPCGSACNCTPNNCTCNHNVASMKE--NLEGNCGCNKCSCGDNCSCNPCNC 81
           + KM  C CGSACNC  NNC+C H+ A + +  NL G      C CG NCSC+PCNC
Sbjct: 50  RRKMPKCGCGSACNCDLNNCSCKHDAAPIMKHRNLSGG-----CKCGANCSCDPCNC 101

[Close]
BLAST of Chy8G153570 vs. NCBI nr
Match: KAE8649531.1 (hypothetical protein Csa_017930, partial [Cucumis sativus])

HSP 1 Score: 171 bits (433), Expect = 9.90e-52
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 0 

Query: 1  WKSVSFELSTRNSKENLKFLILIYFKTKMANCPCGSACNCTPNNCTCNHNVASMKENLEG 60
          WKS SFELSTRNSKENLKFLILIYFK KMANCPCGSACNC+PNNCTCNHNVASMKENLEG
Sbjct: 15 WKSGSFELSTRNSKENLKFLILIYFKRKMANCPCGSACNCSPNNCTCNHNVASMKENLEG 74

Query: 61 NCGCNKCSCGDNCSCNPCNC 80
          NCGCNKCSCGDNCSCNPCNC
Sbjct: 75 NCGCNKCSCGDNCSCNPCNC 94

[Close]
BLAST of Chy8G153570 vs. NCBI nr
Match: XP_022966636.1 (uncharacterized protein LOC111466261 isoform X2 [Cucurbita maxima])

HSP 1 Score: 68.2 bits (165), Expect = 2.97e-11
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 26  KTKMANCPCGSACNCTPNNCTCNHNVAS-MKENLEGNCGCNKCSCGDNCSCNPCNC 80
           + KM  C CGSACNC  NNC+C H+ A  MK+NL G C      CG NCSC+PCNC
Sbjct: 50  RRKMPKCGCGSACNCDLNNCSCKHDAAPIMKQNLSGGC-----KCGANCSCDPCNC 100

[Close]
BLAST of Chy8G153570 vs. NCBI nr
Match: XP_022966635.1 (uncharacterized protein LOC111466261 isoform X1 [Cucurbita maxima])

HSP 1 Score: 63.5 bits (153), Expect = 1.78e-09
Identity = 30/57 (52.63%), Postives = 36/57 (63.16%), Query Frame = 0 

Query: 26  KTKMANCPCGSACNCTPNNCTCNHNVASMKE--NLEGNCGCNKCSCGDNCSCNPCNC 80
           + KM  C CGSACNC  NNC+C H+ A + +  NL G C      CG NCSC+PCNC
Sbjct: 50  RRKMPKCGCGSACNCDLNNCSCKHDAAPIMKHRNLSGGC-----KCGANCSCDPCNC 101

[Close]
BLAST of Chy8G153570 vs. NCBI nr
Match: KAG6541459.1 (hypothetical protein Mapa_017131 [Marchantia paleacea])

HSP 1 Score: 52.8 bits (125), Expect = 2.30e-05
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 0 

Query: 32  CPCGSACNC-TPNNCTCNHNVASMKEN-LEGNCGCNK-CSCGDNCSCNPCNC 80
           C CG+ACNC T N+C    +V S + + + G  G N+ C CGDNCSCNPCNC
Sbjct: 53  CSCGAACNCSTGNSCCPKRSVDSFESSEMRGFEGANEGCKCGDNCSCNPCNC 104

[Close]
BLAST of Chy8G153570 vs. NCBI nr
Match: KAG6557923.1 (hypothetical protein Mapa_000101 [Marchantia paleacea])

HSP 1 Score: 50.4 bits (119), Expect = 6.10e-05
Identity = 26/52 (50.00%), Postives = 32/52 (61.54%), Query Frame = 0 

Query: 32 CPCGSACNCTPNNCTCNHNVASMKENLE--GNCGCNK-CSCGDNCSCNPCNC 80
          C CG+AC C+  N  C++      E+ E  G  G N+ C CGDNCSCNPCNC
Sbjct: 9  CSCGTACKCSSGNSCCSNRSMDDFESSEMRGFEGANEGCKCGDNCSCNPCNC 60

[Close]
BLAST of Chy8G153570 vs. TAIR 10
Match: AT1G07610.1 (metallothionein 1C )

HSP 1 Score: 42.4 bits (98), Expect = 4.8e-04
Identity = 23/52 (44.23%), Postives = 30/52 (57.69%), Query Frame = 0 

Query: 30 ANCPCGSACNCTPNNCTCNHNVASMKENLEGNCGCNKCSCGDNCSC-NPCNC 81
          +NC CGS+C C  ++C+C  N          N  C+ CSCG NCSC + CNC
Sbjct: 4  SNCGCGSSCKC-GDSCSCEKNY---------NKECDNCSCGSNCSCGSSCNC 45

[Close]
BLAST of Chy8G153570 vs. TAIR 10
Match: AT1G07600.1 (metallothionein 1A )

HSP 1 Score: 42.0 bits (97), Expect = 6.3e-04
Identity = 23/52 (44.23%), Postives = 30/52 (57.69%), Query Frame = 0 

Query: 30 ANCPCGSACNCTPNNCTCNHNVASMKENLEGNCGCNKCSCGDNCSC-NPCNC 81
          +NC CGS+C C  ++C+C  N          N  C+ CSCG NCSC + CNC
Sbjct: 4  SNCGCGSSCKC-GDSCSCEKNY---------NKECDNCSCGSNCSCGSNCNC 45

The following BLAST results are available for this feature:
BLAST of Chy8G153570 vs.
Match NameE-valueIdentityDescription
BLAST of Chy8G153570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HPV62.5e-0857.14uncharacterized protein LOC111466261 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HS626.2e-0752.63uncharacterized protein LOC111466261 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of Chy8G153570 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649531.19.90e-5296.25hypothetical protein Csa_017930, partial [Cucumis sativus][more]
XP_022966636.12.97e-1157.14uncharacterized protein LOC111466261 isoform X2 [Cucurbita maxima][more]
XP_022966635.11.78e-0952.63uncharacterized protein LOC111466261 isoform X1 [Cucurbita maxima][more]
KAG6541459.12.30e-0553.85hypothetical protein Mapa_017131 [Marchantia paleacea][more]
KAG6557923.16.10e-0550.00hypothetical protein Mapa_000101 [Marchantia paleacea][more]
BLAST of Chy8G153570 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G07610.14.8e-0444.23metallothionein 1C [more]
AT1G07600.16.3e-0444.23metallothionein 1A [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy8G153570.1Chy8G153570.1mRNA