Chy8G149390 (gene) Cucumber (hystrix) v1

Overview


Name	Chy8G149390
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	NPL domain-containing protein
Location	chrH08: 7873183 .. 7874031 (-)
RNA-Seq Expression	Chy8G149390
Synteny	Chy8G149390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCTCGGGGTTAAATGGCGAAAAATTTATAGTTCAGATTTGGTCCGTGTGACAGTTGGTATCAGAGTCGGCTTGGTGGAATACTGCTCTGCTACCTTGAAGTTGGTATTAGAGTCAGTTCTGGCAAGGTGGAACCTTTGGCCAGAAGAAGACCCATTTGTAGGCATTAGCGTGGTGATACTCTGACCCCATGATGATGTGGTGTCAGAGAGCCCAAGTCCTACAGTAAAAAAAGAGTCCGTCTCTATTGTTTGGGATGACACACTACCGTAACAGTTGGTATAGGGCGAAGGATAAATTGGATTGTGCTACCGTGGTATGTGGTGAAGACAAGAGAATCTATATATACAATCTTGACTATTACTAACAAGTTGGCGCTAAATCTTTTGCAGGAGGTCAGTTTCAAGCACCAATAGATATGGTCTATACTCTTGTAGCCCGGATATAGAAGATATGACAAATAGACTCCTAATGATATGGTCTATCTTTAATAGACTTCAAGAATTAAATTTAAATTTGGTCATATTTATAAATTCTTTTGTATTGTGTTATAATTGTTAATATTTTGGATCTAATTGCTATATTTATAACTGTACCATTTTGTAATTGGGCAGAACCCCGAAAGAGCTGCATAAGTGGATAAAAATCATGCTTGATTCATACCATCTAAACCAGGAAGATACGGACATCAGAGAAGCAAGGAATATGACTCAGCCTATTGTTATACAAAGGCTATTCATCCTTAAGGATACTATTGAAACTGAGTATTTGGAACAGAATCAGTTTCAGAATCCTCAATCAAGACCAAGTCATAATCATGGTTCTGAGGATGCAATCTCCATATAG

mRNA sequence

ATGCCTCTCGGGGTTAAATGGCGAAAAATTTATAGTTCAGATTTGGTCCGTGTGACAGTTGGTATCAGAGTCGGCTTGGTGGAATACTGCTCTGCTACCTTGAAGTTGGTATTAGAGTCAGTTCTGGCAAGGTGGAACCTTTGGCCAGAAGAAGACCCATTTGTAGGCATTAGCGTGGAAGATACGGACATCAGAGAAGCAAGGAATATGACTCAGCCTATTGTTATACAAAGGCTATTCATCCTTAAGGATACTATTGAAACTGAGTATTTGGAACAGAATCAGTTTCAGAATCCTCAATCAAGACCAAGTCATAATCATGGTTCTGAGGATGCAATCTCCATATAG

Coding sequence (CDS)

ATGCCTCTCGGGGTTAAATGGCGAAAAATTTATAGTTCAGATTTGGTCCGTGTGACAGTTGGTATCAGAGTCGGCTTGGTGGAATACTGCTCTGCTACCTTGAAGTTGGTATTAGAGTCAGTTCTGGCAAGGTGGAACCTTTGGCCAGAAGAAGACCCATTTGTAGGCATTAGCGTGGAAGATACGGACATCAGAGAAGCAAGGAATATGACTCAGCCTATTGTTATACAAAGGCTATTCATCCTTAAGGATACTATTGAAACTGAGTATTTGGAACAGAATCAGTTTCAGAATCCTCAATCAAGACCAAGTCATAATCATGGTTCTGAGGATGCAATCTCCATATAG

Protein sequence

MPLGVKWRKIYSSDLVRVTVGIRVGLVEYCSATLKLVLESVLARWNLWPEEDPFVGISVEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPSHNHGSEDAISI*

Homology

[Close]

BLAST of Chy8G149390 vs. ExPASy Swiss-Prot
Match: Q84WN0 (Uncharacterized protein At4g37920 OS=Arabidopsis thaliana OX=3702 GN=At4g37920 PE=2 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07
Identity = 26/37 (70.27%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 57  ISVEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQ 94
           ++ E+TDI+EA+ M+QPIVIQRLFILKDTIE EYL++
Sbjct: 368 LNKEETDIKEAKQMSQPIVIQRLFILKDTIEDEYLDK 404

[Close]

BLAST of Chy8G149390 vs. ExPASy TrEMBL
Match: A0A0A0L3X1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G515540 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 57  ISVEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPSHNHGSEDAISI 116
           ++ EDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPSHNHGSEDAISI
Sbjct: 377 LNQEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPSHNHGSEDAISI 435

[Close]

BLAST of Chy8G149390 vs. ExPASy TrEMBL
Match: A0A5D3C216 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00850 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.5e-22
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 57  ISVEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPSHNHGSEDAISI 116
           ++ EDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRP+HNHGSEDAISI
Sbjct: 765 LNQEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPNHNHGSEDAISI 823

[Close]

BLAST of Chy8G149390 vs. ExPASy TrEMBL
Match: A0A1S3B4W5 (uncharacterized protein At4g37920, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486045 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.5e-22
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 57  ISVEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPSHNHGSEDAISI 116
           ++ EDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRP+HNHGSEDAISI
Sbjct: 377 LNQEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPNHNHGSEDAISI 435

[Close]

BLAST of Chy8G149390 vs. ExPASy TrEMBL
Match: A0A6J1HRT8 (uncharacterized protein At4g37920 OS=Cucurbita maxima OX=3661 GN=LOC111467208 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 57  ISVEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPSHNHGSEDAISI 116
           ++ EDTDIREAR M QPIVIQRLFILKDTIETEYLEQN+ QNPQS+P  NH S +A+SI
Sbjct: 376 LNQEDTDIREARKMAQPIVIQRLFILKDTIETEYLEQNELQNPQSKP--NHVSANAVSI 432

[Close]

BLAST of Chy8G149390 vs. ExPASy TrEMBL
Match: A0A6J1F3Z5 (uncharacterized protein At4g37920 OS=Cucurbita moschata OX=3662 GN=LOC111439867 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 57  ISVEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPSHNHGSEDAISI 116
           ++ EDTDIREAR M QPIVIQRLFILKDTIETEYLEQN+ QN QS+P  NH S +A+SI
Sbjct: 376 LNQEDTDIREARKMAQPIVIQRLFILKDTIETEYLEQNESQNAQSKP--NHVSTNAVSI 432

[Close]

BLAST of Chy8G149390 vs. NCBI nr
Match: XP_031740558.1 (uncharacterized protein At4g37920 isoform X2 [Cucumis sativus])

HSP 1 Score: 116 bits (290), Expect = 1.99e-28
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 57  ISVEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPSHNHGSEDAISI 115
           ++ EDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPSHNHGSEDAISI
Sbjct: 294 LNQEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPSHNHGSEDAISI 352

[Close]

BLAST of Chy8G149390 vs. NCBI nr
Match: XP_004146379.1 (uncharacterized protein At4g37920 isoform X1 [Cucumis sativus] >KGN54831.1 hypothetical protein Csa_012204 [Cucumis sativus])

HSP 1 Score: 116 bits (290), Expect = 6.24e-28
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 57  ISVEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPSHNHGSEDAISI 115
           ++ EDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPSHNHGSEDAISI
Sbjct: 377 LNQEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPSHNHGSEDAISI 435

[Close]

BLAST of Chy8G149390 vs. NCBI nr
Match: XP_008442081.1 (PREDICTED: uncharacterized protein At4g37920, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 115 bits (287), Expect = 1.68e-27
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 57  ISVEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPSHNHGSEDAISI 115
           ++ EDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRP+HNHGSEDAISI
Sbjct: 377 LNQEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPNHNHGSEDAISI 435

[Close]

BLAST of Chy8G149390 vs. NCBI nr
Match: KAA0041876.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK05400.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (287), Expect = 6.03e-27
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 57  ISVEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPSHNHGSEDAISI 115
           ++ EDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRP+HNHGSEDAISI
Sbjct: 765 LNQEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPNHNHGSEDAISI 823

[Close]

BLAST of Chy8G149390 vs. NCBI nr
Match: XP_038883876.1 (uncharacterized protein At4g37920 isoform X3 [Benincasa hispida])

HSP 1 Score: 99.4 bits (246), Expect = 4.84e-22
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 57  ISVEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQNQFQNPQSRPSHNHGSEDAISI 115
           ++ EDTDIREARNMTQP+VIQRLFILKDTIETEYLEQN+FQNPQS P  NH SEDA+SI
Sbjct: 294 LNQEDTDIREARNMTQPVVIQRLFILKDTIETEYLEQNEFQNPQSTP--NHVSEDAVSI 350

[Close]

BLAST of Chy8G149390 vs. TAIR 10
Match: AT4G37920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36320.1); Has 123 Blast hits to 120 proteins in 40 species: Archae - 2; Bacteria - 11; Metazoa - 8; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 9.0e-09
Identity = 26/37 (70.27%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 57  ISVEDTDIREARNMTQPIVIQRLFILKDTIETEYLEQ 94
           ++ E+TDI+EA+ M+QPIVIQRLFILKDTIE EYL++
Sbjct: 368 LNKEETDIKEAKQMSQPIVIQRLFILKDTIEDEYLDK 404

The following BLAST results are available for this feature:

BLAST of Chy8G149390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WN0	1.3e-07	70.27	Uncharacterized protein At4g37920 OS=Arabidopsis thaliana OX=3702 GN=At4g37920 P...	[more]

BLAST of Chy8G149390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3X1	1.1e-22	94.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G515540 PE=4 SV=1	[more]
A0A5D3C216	2.5e-22	93.22	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3B4W5	2.5e-22	93.22	uncharacterized protein At4g37920, chloroplastic isoform X1 OS=Cucumis melo OX=3...	[more]
A0A6J1HRT8	1.1e-14	76.27	uncharacterized protein At4g37920 OS=Cucurbita maxima OX=3661 GN=LOC111467208 PE...	[more]
A0A6J1F3Z5	1.6e-13	74.58	uncharacterized protein At4g37920 OS=Cucurbita moschata OX=3662 GN=LOC111439867 ...	[more]

BLAST of Chy8G149390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740558.1	1.99e-28	94.92	uncharacterized protein At4g37920 isoform X2 [Cucumis sativus]	[more]
XP_004146379.1	6.24e-28	94.92	uncharacterized protein At4g37920 isoform X1 [Cucumis sativus] >KGN54831.1 hypot...	[more]
XP_008442081.1	1.68e-27	93.22	PREDICTED: uncharacterized protein At4g37920, chloroplastic isoform X1 [Cucumis ...	[more]
KAA0041876.1	6.03e-27	93.22	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK05400.1 ty3-gyp...	[more]
XP_038883876.1	4.84e-22	83.05	uncharacterized protein At4g37920 isoform X3 [Benincasa hispida]	[more]

BLAST of Chy8G149390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37920.1	9.0e-09	70.27	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..115
None	No IPR available	PANTHER	PTHR31755:SF2	ENDORIBONUCLEASE E-LIKE PROTEIN	coord: 58..103
IPR040320	Uncharacterized protein At4g37920-like	PANTHER	PTHR31755	FOLATE RECEPTOR-LIKE	coord: 58..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy8G149390.1	Chy8G149390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding