Chy7G144550 (gene) Cucumber (hystrix) v1

Overview


Name	Chy7G144550
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	TATA-binding protein-associated factor 2N-like
Location	chrH07: 20298246 .. 20298962 (-)
RNA-Seq Expression	Chy7G144550
Synteny	Chy7G144550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGACCGGGAGACTGGAACTGTAGGTCATGCCAGCATTTGAACTTCCAGAGGAGGGACATGTGCCAGCGTTGCGGCGAACCGAAGAGCGGCGGCGGTATGGGAAGAGGTGGGTCTGGTTTCGGGTACGGAGGATCGGATGTGAGGCCCGGGGACTGGTACTGTAGCGTTGGAAATTGTGGAGCTCACAATTTTGCAAGCCGATCAAGCTGCTTCAAATGTGGAGCTTTCAAAGACGACATGTCGGCCTTCGACTTCGATATTCCTCGTCGTAGTCCTAGAGGGATTTCCCCATTTGCTTTTCCCAGTCCCGCCCGTACTGCTTCCTCCGCTTGGAAGTCCGGTGACTGGATTTGTGCAAGGTAAAAGCCGTAATATCAGTTTGATAATCATTTGGCTTTTTCTACGTTTTTTTAGTATGATTTTTATCCTCCTCTTTGACCAAAACTAAGTTTTCAAATTCCATTGTCCTACATTATTTTGTATAAAAAAATAGACAACCAATAAAGAAACTCATATCAACTTAACTTTTTAATATAAAATTCAAACTGTTATCCAAATAAAGTCATAATATTTTATCATATTAAAGTTTGTCTATCTCTAGATTCTCATGTGAATATGATTGTGTGAAAATTCAGGTCGGGTTGCAATGAACATAACTTTGCAAGCAGGATGGAGTGCTTTAGATGCAGTGCTCCGAGAGACTCCTACTAA

mRNA sequence

ATGAGTAGACCGGGAGACTGGAACTGTAGGTCATGCCAGCATTTGAACTTCCAGAGGAGGGACATGTGCCAGCGTTGCGGCGAACCGAAGAGCGGCGGCGGTATGGGAAGAGGTGGGTCTGGTTTCGGGTACGGAGGATCGGATGTGAGGCCCGGGGACTGGTACTGTAGCGTTGGAAATTGTGGAGCTCACAATTTTGCAAGCCGATCAAGCTGCTTCAAATGTGGAGCTTTCAAAGACGACATGTCGGCCTTCGACTTCGATATTCCTCGTCGTAGTCCTAGAGGGATTTCCCCATTTGCTTTTCCCAGTCCCGCCCGTACTGCTTCCTCCGCTTGGAAGTCCGGTGACTGGATTTGTGCAAGGTCGGGTTGCAATGAACATAACTTTGCAAGCAGGATGGAGTGCTTTAGATGCAGTGCTCCGAGAGACTCCTACTAA

Coding sequence (CDS)

ATGAGTAGACCGGGAGACTGGAACTGTAGGTCATGCCAGCATTTGAACTTCCAGAGGAGGGACATGTGCCAGCGTTGCGGCGAACCGAAGAGCGGCGGCGGTATGGGAAGAGGTGGGTCTGGTTTCGGGTACGGAGGATCGGATGTGAGGCCCGGGGACTGGTACTGTAGCGTTGGAAATTGTGGAGCTCACAATTTTGCAAGCCGATCAAGCTGCTTCAAATGTGGAGCTTTCAAAGACGACATGTCGGCCTTCGACTTCGATATTCCTCGTCGTAGTCCTAGAGGGATTTCCCCATTTGCTTTTCCCAGTCCCGCCCGTACTGCTTCCTCCGCTTGGAAGTCCGGTGACTGGATTTGTGCAAGGTCGGGTTGCAATGAACATAACTTTGCAAGCAGGATGGAGTGCTTTAGATGCAGTGCTCCGAGAGACTCCTACTAA

Protein sequence

MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGMGRGGSGFGYGGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTASSAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY*

Homology

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BLAST of Chy7G144550 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-08
Identity = 43/146 (29.45%), Postives = 58/146 (39.73%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRDMCQRCGEP-----KSGGGMGRGGSGFGYGGSDVRPGDWYCS 62
           RPGDWNC  C   NFQRR  C RC  P      +  G       F YG           S
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGN----------S 402

Query: 63  VGNCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTASSAWKSGD 122
            GN  +H  A+    +       + +    D+  ++          S +   +  +++GD
Sbjct: 403 YGNGSSHFIAN----YGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPFRAGD 462

Query: 123 WICARSGCNEHNFASRMECFRCSAPR 144
           W C   GC  HNFA  + C RC A R
Sbjct: 463 WKCGSEGCGYHNFAKNVCCLRCGASR 474

[Close]

BLAST of Chy7G144550 vs. ExPASy Swiss-Prot
Match: Q27294 (RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 4.8e-04
Identity = 31/68 (45.59%), Postives = 34/68 (50.00%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRDMCQRCGEPK-----SGGGMGRGGSGFGYGGSDVRPGDWYCS 62
           R GDW C SC + NF  R+ C RC  PK     S GG G GG G G GG     G+   S
Sbjct: 275 RDGDWKCNSCNNTNFAWRNECNRCKTPKGDDEGSSGGGGGGGYGGGGGGGGYDRGNDRGS 334

Query: 63  VGNCGAHN 66
            G  G HN
Sbjct: 335 -GGGGYHN 341

[Close]

BLAST of Chy7G144550 vs. ExPASy TrEMBL
Match: A0A0A0KTI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004840 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 1.9e-83
Identity = 144/146 (98.63%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGMGRGGSGFGYGGSDVRPGDWYCSVGN 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGG+GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTASSAWKSGDWIC 120
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTA+SAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSGDWIC 120

Query: 121 ARSGCNEHNFASRMECFRCSAPRDSY 147
           ARSGCNEHNFASRMECFRCSAPRDSY
Sbjct: 121 ARSGCNEHNFASRMECFRCSAPRDSY 146

[Close]

BLAST of Chy7G144550 vs. ExPASy TrEMBL
Match: A0A1S3BZE4 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucumis melo OX=3656 GN=LOC103494712 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 3.9e-81
Identity = 141/146 (96.58%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGMGRGGSGFGYGGSDVRPGDWYCSVGN 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGG+GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTASSAWKSGDWIC 120
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPR SPRGISPFAF SPAR A+SAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFAFASPARAAASAWKSGDWIC 120

Query: 121 ARSGCNEHNFASRMECFRCSAPRDSY 147
           ARSGCNEHNFASRMECFRCSAPRDSY
Sbjct: 121 ARSGCNEHNFASRMECFRCSAPRDSY 146

[Close]

BLAST of Chy7G144550 vs. ExPASy TrEMBL
Match: A0A6J1GWG9 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita moschata OX=3662 GN=LOC111457775 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.7e-74
Identity = 127/146 (86.99%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGMGRGGSGFGYGGSDVRPGDWYCSVGN 60
           M+RPGDWNC SC HLNFQRRD+CQRCG+PK+GGG  R GSGFG+GGSDVRPGDWYCSVGN
Sbjct: 1   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTASSAWKSGDWIC 120
           CGAHNFASRSSCFKCGAFKDDMSAFDFD+PR +PRGISPFAF +PAR+ +SAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPFAFATPARSPASAWKSGDWIC 120

Query: 121 ARSGCNEHNFASRMECFRCSAPRDSY 147
           ARSGCNEHNFASRMECFRC+APRDSY
Sbjct: 121 ARSGCNEHNFASRMECFRCNAPRDSY 146

[Close]

BLAST of Chy7G144550 vs. ExPASy TrEMBL
Match: A0A6J1IX27 (ranBP2-type zinc finger protein At1g67325-like OS=Cucurbita maxima OX=3661 GN=LOC111479282 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.6e-74
Identity = 127/146 (86.99%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGMGRGGSGFGYGGSDVRPGDWYCSVGN 60
           M+RPGDWNC SC HLNFQRRD+CQRCG+PK+GGG GR GSGFG+GGSDVRPGDWYCS+GN
Sbjct: 1   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKAGGG-GRAGSGFGFGGSDVRPGDWYCSLGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTASSAWKSGDWIC 120
           CGAHNFASRSSCFKCGAFKDDMSAFDFD+PR +PRGISPF FP+PAR+ +SAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPFGFPTPARSPASAWKSGDWIC 120

Query: 121 ARSGCNEHNFASRMECFRCSAPRDSY 147
           ARSGCNEHNFASRMECFRC+APRDSY
Sbjct: 121 ARSGCNEHNFASRMECFRCNAPRDSY 145

[Close]

BLAST of Chy7G144550 vs. ExPASy TrEMBL
Match: A0A6J1GA82 (periodic tryptophan protein 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452195 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.2e-70
Identity = 132/164 (80.49%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGG----------GMGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCG+PKSGG          G GRGGSGFGYGGSDVR
Sbjct: 181 MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 240

Query: 61  PGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA----FDFDIPRRSPRGISPFAFPSP- 120
           PGDWYCS+GNCGAHNFASRSSCFKCGAFKDDMSA    FDFD+PR   RG+SPF F +P 
Sbjct: 241 PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPR--SRGLSPFGFANPA 300

Query: 121 ---ARTASSAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY 147
              ART +SAWKSGDWICARSGCNEHNFASRMECFRCSAP+DSY
Sbjct: 301 AAAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 342

[Close]

BLAST of Chy7G144550 vs. NCBI nr
Match: KGN52873.1 (hypothetical protein Csa_014917 [Cucumis sativus])

HSP 1 Score: 321 bits (823), Expect = 4.05e-111
Identity = 144/146 (98.63%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGMGRGGSGFGYGGSDVRPGDWYCSVGN 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGG+GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGIGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTASSAWKSGDWIC 120
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTA+SAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSGDWIC 120

Query: 121 ARSGCNEHNFASRMECFRCSAPRDSY 146
           ARSGCNEHNFASRMECFRCSAPRDSY
Sbjct: 121 ARSGCNEHNFASRMECFRCSAPRDSY 146

[Close]

BLAST of Chy7G144550 vs. NCBI nr
Match: XP_008454250.1 (PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Cucumis melo])

HSP 1 Score: 313 bits (803), Expect = 4.55e-108
Identity = 141/146 (96.58%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGMGRGGSGFGYGGSDVRPGDWYCSVGN 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGG+GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTASSAWKSGDWIC 120
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPR SPRGISPFAF SPAR A+SAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFAFASPARAAASAWKSGDWIC 120

Query: 121 ARSGCNEHNFASRMECFRCSAPRDSY 146
           ARSGCNEHNFASRMECFRCSAPRDSY
Sbjct: 121 ARSGCNEHNFASRMECFRCSAPRDSY 146

[Close]

BLAST of Chy7G144550 vs. NCBI nr
Match: XP_038892097.1 (zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida] >XP_038892106.1 zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida])

HSP 1 Score: 313 bits (802), Expect = 6.47e-108
Identity = 140/146 (95.89%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGMGRGGSGFGYGGSDVRPGDWYCSVGN 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCG+PKSGGG+GRGGSGFGYGGSDVRPGDWYCSVGN
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGVGRGGSGFGYGGSDVRPGDWYCSVGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTASSAWKSGDWIC 120
           CGAHNFASRSSCFKCGAFKDDMSAFDFDIPR SPRGISP+AF SPARTA+SAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPYAFASPARTAASAWKSGDWIC 120

Query: 121 ARSGCNEHNFASRMECFRCSAPRDSY 146
           ARSGCNEHNFASRMECFRCSAPRDSY
Sbjct: 121 ARSGCNEHNFASRMECFRCSAPRDSY 146

[Close]

BLAST of Chy7G144550 vs. NCBI nr
Match: XP_022955940.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata] >XP_022955941.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata])

HSP 1 Score: 291 bits (744), Expect = 4.55e-99
Identity = 127/146 (86.99%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGMGRGGSGFGYGGSDVRPGDWYCSVGN 60
           M+RPGDWNC SC HLNFQRRD+CQRCG+PK+GGG  R GSGFG+GGSDVRPGDWYCSVGN
Sbjct: 1   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGARAGSGFGFGGSDVRPGDWYCSVGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTASSAWKSGDWIC 120
           CGAHNFASRSSCFKCGAFKDDMSAFDFD+PR +PRGISPFAF +PAR+ +SAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPFAFATPARSPASAWKSGDWIC 120

Query: 121 ARSGCNEHNFASRMECFRCSAPRDSY 146
           ARSGCNEHNFASRMECFRC+APRDSY
Sbjct: 121 ARSGCNEHNFASRMECFRCNAPRDSY 146

[Close]

BLAST of Chy7G144550 vs. NCBI nr
Match: XP_022979604.1 (ranBP2-type zinc finger protein At1g67325-like [Cucurbita maxima])

HSP 1 Score: 290 bits (741), Expect = 1.26e-98
Identity = 127/146 (86.99%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGMGRGGSGFGYGGSDVRPGDWYCSVGN 60
           M+RPGDWNC SC HLNFQRRD+CQRCG+PK+GGG GR GSGFG+GGSDVRPGDWYCS+GN
Sbjct: 1   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKAGGG-GRAGSGFGFGGSDVRPGDWYCSLGN 60

Query: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTASSAWKSGDWIC 120
           CGAHNFASRSSCFKCGAFKDDMSAFDFD+PR +PRGISPF FP+PAR+ +SAWKSGDWIC
Sbjct: 61  CGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPFGFPTPARSPASAWKSGDWIC 120

Query: 121 ARSGCNEHNFASRMECFRCSAPRDSY 146
           ARSGCNEHNFASRMECFRC+APRDSY
Sbjct: 121 ARSGCNEHNFASRMECFRCNAPRDSY 145

[Close]

BLAST of Chy7G144550 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 198.4 bits (503), Expect = 4.1e-51
Identity = 102/167 (61.08%), Postives = 111/167 (66.47%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSG----GGM------GRGGSGFGY-GGSDV 60
           MSRPGDWNCRSC HLNFQRRD CQRCG+ +SG    GG+      GR  S FG+  GSDV
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDV 60

Query: 61  RPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA------------FDFDIPRRSPRGI 120
           RPGDWYC+VGNCG HNFASRS+CFKCG FKD+  A            FD DI R      
Sbjct: 61  RPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSR---- 120

Query: 121 SPFAFPSPARTASSAWKSGDWICARSGCNEHNFASRMECFRCSAPRD 145
                  P     S+WKSGDWIC R GCNEHNFASRMECFRC+APRD
Sbjct: 121 ------VPGNGGRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRD 157

[Close]

BLAST of Chy7G144550 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-46
Identity = 96/165 (58.18%), Postives = 110/165 (66.67%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGG-----GMGRGG----SGFGYG-GSDVR 60
           M+RPGDWNCR C HLNFQRRD CQRC EP+ GG       G GG    S FG+  G DVR
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVR 60

Query: 61  PGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSA---------FDFDIPRRSPRGISPFA 120
           PGDWYC++G+CG HNFA+RSSCFKCGA KD+ S           D ++  R  RG+  F 
Sbjct: 61  PGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPR--RGLFGFG 120

Query: 121 FPSP--ARTASSAWKSGDWICARSGCNEHNFASRMECFRCSAPRD 145
             S     T  S WKSGDWIC RSGCNEHNFASR ECFRC+AP++
Sbjct: 121 GSSSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKE 163

[Close]

BLAST of Chy7G144550 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 132.5 bits (332), Expect = 2.8e-31
Identity = 61/140 (43.57%), Postives = 83/140 (59.29%), Query Frame = 0


Query: 5   GDWNCRSCQHLNFQRRDMCQRCGEPKSGGGMGRGGSGFGYGGSDVRPGDWYCSVGNCGAH 64
           GDW C +CQH NF++R+ CQ+CG PK G   G   S + Y  ++V  GDWYC   NCG+H
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPKFG---GVDVSTYLYNRTEVMAGDWYCGALNCGSH 65

Query: 65  NFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTASSAWKSGDWICARSG 124
           N+ASR+SC++CG  K + +   +        G    A+ +        WK+GDW+C R G
Sbjct: 66  NYASRTSCYRCGMIKVEYTEQYY--------GAQMVAYGNDGAACPPGWKTGDWVCPRVG 125

Query: 125 CNEHNFASRMECFRCSAPRD 145
           C  HN+ASR ECF+C   RD
Sbjct: 126 CGVHNYASRAECFKCKTTRD 134

[Close]

BLAST of Chy7G144550 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 55.8 bits (133), Expect = 3.3e-08
Identity = 39/135 (28.89%), Postives = 47/135 (34.81%), Query Frame = 0


Query: 50  RPGDWYCSVGNCGAHNFASRSSCFKCGAF------------------------------K 109
           R GDW C    CG HN++SR  C KC                                  
Sbjct: 127 RSGDWIC---RCGFHNYSSRIQCKKCNEIAPLALGTKRLASEALAHEWDSKRLNQGYTSM 186

Query: 110 DDMSAFDFDIPRRSPRGISPFAFPSPARTASSA----------WKSGDWICARSGCNEHN 145
              SA     P  S   +S +  P P     S           W+ GDW+C  + C  HN
Sbjct: 187 QTQSAIYASFPGMSLGRVSNWQLPLPFLQQHSTPALLGMGVKQWRDGDWMC--TNCKNHN 246

[Close]

BLAST of Chy7G144550 vs. TAIR 10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 7.6e-05
Identity = 22/73 (30.14%), Postives = 31/73 (42.47%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRDMCQRCGEPKSGGGMGRGGSGFGYGGSDVRPGDWYCSVGNCG 62
           + GDW C++C  LNF +   C RC +  +                 + PG+W C   +C 
Sbjct: 279 KKGDWICQTCNFLNFSKNTRCLRCKDKPT--------------LRQINPGEWECE--SCN 335

Query: 63  AHNFASRSSCFKC 76
             NF   S C KC
Sbjct: 339 YINFRRNSICLKC 335

The following BLAST results are available for this feature:

BLAST of Chy7G144550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	1.1e-08	29.45	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]
Q27294	4.8e-04	45.59	RNA-binding protein cabeza OS=Drosophila melanogaster OX=7227 GN=caz PE=2 SV=2	[more]

BLAST of Chy7G144550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTI0	1.9e-83	98.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004840 PE=4 SV=1	[more]
A0A1S3BZE4	3.9e-81	96.58	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1GWG9	2.7e-74	86.99	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1IX27	4.6e-74	86.99	ranBP2-type zinc finger protein At1g67325-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1GA82	5.2e-70	80.49	periodic tryptophan protein 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Chy7G144550 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52873.1	4.05e-111	98.63	hypothetical protein Csa_014917 [Cucumis sativus]	[more]
XP_008454250.1	4.55e-108	96.58	PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Cucumis melo]	[more]
XP_038892097.1	6.47e-108	95.89	zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida] >XP...	[more]
XP_022955940.1	4.55e-99	86.99	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata] >XP_0229...	[more]
XP_022979604.1	1.26e-98	86.99	ranBP2-type zinc finger protein At1g67325-like [Cucurbita maxima]	[more]

BLAST of Chy7G144550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15680.1	4.1e-51	61.08	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	1.0e-46	58.18	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	2.8e-31	43.57	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	3.3e-08	28.89	zinc finger (Ran-binding) family protein	[more]
AT1G70650.1	7.6e-05	30.14	Ran BP2/NZF zinc finger-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 5..29 e-value: 1.1E-4 score: 31.5 coord: 116..142 e-value: 2.1E-5 score: 34.0 coord: 52..78 e-value: 2.3E-5 score: 33.8
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 50..77 e-value: 1.1E-5 score: 24.6 coord: 114..143 e-value: 1.1E-10 score: 40.6 coord: 3..31 e-value: 0.0012 score: 18.1
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 118..139
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 7..26
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 54..75
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 114..145 score: 10.545425
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 3..32 score: 9.777556
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 50..81 score: 9.890478
None	No IPR available	GENE3D	4.10.1060.10		coord: 2..33 e-value: 1.4E-10 score: 42.3 coord: 106..145 e-value: 3.7E-13 score: 50.5 coord: 46..81 e-value: 2.0E-12 score: 48.2
None	No IPR available	PANTHER	PTHR23111:SF26	RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN	coord: 1..145
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..145
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..33
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 42..81
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 109..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy7G144550.1	Chy7G144550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding