Chy7G132280 (gene) Cucumber (hystrix) v1

Overview


Name	Chy7G132280
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	High mobility group B protein 2
Location	chrH07: 3177676 .. 3178999 (+)
RNA-Seq Expression	Chy7G132280
Synteny	Chy7G132280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGCGGTAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAGTGAGTTTTTATATATATATATATATATATTATTGGTCTTATACGTTTATTTTCTAGCTTTGATCGACCCTAGATCTAGAAAGCTTCATTGTTTTTCAATTACCTGTTCAAAAGCTAGGCGTTGACTTTCTTCTATTTGATTGATCGCTTTTGGTGATTTTTTTTATCCTTTTAATTGTAGGCTTGCTGTGAAAAAAGGTGCAGCGGGTAAGAAAGGGAGTAAGAAGGCAGGGAAAGATCCTAACAAACCCAAGAGGCCTGCCAGCGCCTTCTTCGTTTTTATGTAATTTTTTTTATCTTTTAATTTACCGTTCTGAATGATTATCTGCAAATTGTCTAATTTTGATGGTTTTAGAGTTGCGAAAAAATTGTAAACAAGGGTACAAAGACGACGATCTTGTTTTCCATGAGCGACTACTGATGTTCGAATTAATTAGAAATACCTTTAGGAAATATCAGTGAATATTAGAATTGTTGATTTTTGACAAAATAGATTCCTTTGATCTGTGGGTCTATTTAGCATGTAGATCCTTTATTTTTGCAGTCGTTTTCTTTAGATAAGTCGAGTACCATCTGACCCATCTGCTGCTCTGTTATTGCATTTGTTTTATTATCAAAGGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAACAACAAAGCAGTGTCTGCTGTAAGCTATTTAACTTTGTACTAGTTGCTCCTTGTCTCCATTTGAATTTTCGTGACTCTTTTGTGGGAATGAGTAAAGATTTTGGTTTACAAATGATTCAATCAGGTTGGTAAAGCTGCTGGACAGAAATGGAAATCAATGTCAGATGCTGTACGTGATAGCTATCATAGTATTTCTTACACTTATCCTGATATTATAAACTCTCTCTGAATTACTGTTTATAATATCAGGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAACATGAAGGCCTATAACAAGAAACAGGTATATTGTCTCGGAAAAGTCCTTCAATCATTTTGATTGCAGCACTTATTTTCTTATGTGAATAAATTCTCATATATCGGGTGAGTTCAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAATCAATGTCTGAGGTGAATGATGATGAGGATGGAGATGAGGGCAGCGAAGAGGTTAGCTTTCTTAAGGAATTTAGTTAAATTAAACATCTAAAGTTGGAACTGTTTTTTCATATCATTTTTTTCCCCTCCAATTTTGCAGGAGGACGATGACGAGTGA

mRNA sequence

ATGAAAGGCGGTAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAGCTTGCTGTGAAAAAAGGTGCAGCGGGTAAGAAAGGGAGTAAGAAGGCAGGGAAAGATCCTAACAAACCCAAGAGGCCTGCCAGCGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAACAACAAAGCAGTGTCTGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCAATGTCAGATGCTGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAACATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAATCAATGTCTGAGGTGAATGATGATGAGGATGGAGATGAGGGCAGCGAAGAGGAGGACGATGACGAGTGA

Coding sequence (CDS)

ATGAAAGGCGGTAAATCGAAGTCGGAGTCGAAGAAAGCAGACACCAAGCTTGCTGTGAAAAAAGGTGCAGCGGGTAAGAAAGGGAGTAAGAAGGCAGGGAAAGATCCTAACAAACCCAAGAGGCCTGCCAGCGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAACAACAAAGCAGTGTCTGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCAATGTCAGATGCTGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAACATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAATCAATGTCTGAGGTGAATGATGATGAGGATGGAGATGAGGGCAGCGAAGAGGAGGACGATGACGAGTGA

Protein sequence

MKGGKSKSESKKADTKLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEEEDDDE*

Homology

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BLAST of Chy7G132280 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 4.6e-47
Identity = 113/152 (74.34%), Postives = 130/152 (85.53%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAV-KKGAAGK----KGSKKAGKDPNKPKRPASAFFVFMEEFRK 60
           MKGGKSK+ESK+AD KLAV KKGAA K     G  KA KDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  KFNEENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGA 120
            FN+E+P NKAVSAVGKAAG KWK+MSDAEKAPY+AK++KRKVEYEKNM+AYNKKQA G 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 121 NAAEEDESEKSMSEVNDDEDGDEGSEEEDDDE 148
              +E+ESEKS+SEVND++D +EGS EE+DD+
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

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BLAST of Chy7G132280 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.1e-39
Identity = 98/147 (66.67%), Postives = 123/147 (83.67%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKG KSK+E++   TKL+V K  A  KG+K A KDPNKPKRP+SAFFVFME+FR  + EE
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPA--KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEE 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           +P NK+V+AVGKA G+KWKS+SD+EKAPY+AKADKRKVEYEKNMKAYNKK   G    E+
Sbjct: 61  HPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--ED 120

Query: 121 DESEKSMSEVNDDEDGDEGSEEEDDDE 148
           +ES+KS+SEVND++D ++GSEEE+DD+
Sbjct: 121 EESDKSVSEVNDEDDAEDGSEEEEDDD 141

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BLAST of Chy7G132280 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 7.9e-39
Identity = 97/147 (65.99%), Postives = 122/147 (82.99%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKGGKSK+   K+D KLAVKK AA  K +KKA KDPNKPKRP SAFFVFME+FRK + E+
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEK 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           +PNNK+V+ VGKA G KWK ++ AEKAP+I+KA+KRK EYEKN++AYNKKQA+G  AAEE
Sbjct: 61  HPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEE 120

Query: 121 DESEKSMSEVNDDEDGDEGSEEEDDDE 148
           +ES+KS SEVNDD++  +GS E+D ++
Sbjct: 121 EESDKSRSEVNDDDEDQDGSGEDDSED 142

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BLAST of Chy7G132280 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.3e-38
Identity = 97/148 (65.54%), Postives = 122/148 (82.43%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAV-KKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNE 60
           MKG KSK+E++   +KL+V KK A G    K A KDPNKPKRPASAFFVFME+FR+ F +
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKK 60

Query: 61  ENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAE 120
           ENP NK+V+ VGKAAG KWKS+SD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    E
Sbjct: 61  ENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--E 120

Query: 121 EDESEKSMSEVNDDEDGDEGSEEEDDDE 148
           ++ES+KS+SEVND++D ++GSEEE+DD+
Sbjct: 121 DEESDKSVSEVNDEDDAEDGSEEEEDDD 144

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BLAST of Chy7G132280 vs. ExPASy Swiss-Prot
Match: P27347 (DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.7e-34
Identity = 97/160 (60.62%), Postives = 122/160 (76.25%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVK-----KGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRK 60
           MKG KSK  + KAD KLAVK     K A G+KG  KAGKDPNKPKR  SAFFVFMEEFRK
Sbjct: 1   MKGAKSKG-AAKADAKLAVKSKGAEKPAKGRKG--KAGKDPNKPKRAPSAFFVFMEEFRK 60

Query: 61  KFNEENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGA 120
           +F E+NP NK+V+AVGKAAG +WKS+S+++KAPY+AKA+K K+EY K + AYNK +++ A
Sbjct: 61  EFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAA 120

Query: 121 NAA--------EEDESEKSMSEVNDDEDGDEGSEEEDDDE 148
             A        +E+ES+KS SEVN DED +EGSEE++DD+
Sbjct: 121 KKAPAKEEEEEDEEESDKSKSEVN-DEDDEEGSEEDEDDD 156

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BLAST of Chy7G132280 vs. ExPASy TrEMBL
Match: A0A1S3BW96 (HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.3e-65
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKGGKSKSESKKADTKLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA+E
Sbjct: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAADE 120

Query: 121 DESEKSMSEVNDDEDGDEGSEEEDDDE 148
           DESEKSMSEVNDDEDGDEGSEEEDDDE
Sbjct: 121 DESEKSMSEVNDDEDGDEGSEEEDDDE 147

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BLAST of Chy7G132280 vs. ExPASy TrEMBL
Match: A0A6J1FF34 (HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111443365 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 140/149 (93.96%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGA--AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKLAVKKGA  AGKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 148
           EEDESEKS+SEVNDDE+GDEGSEEEDDDE
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDDE 149

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BLAST of Chy7G132280 vs. ExPASy TrEMBL
Match: A0A6J1IF57 (HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111476382 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.9e-60
Identity = 139/149 (93.29%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGA--AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKLAVKKGA  AGKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 148
           EEDESEKS+SEVNDDE+GDEGSEEEDDD+
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDDD 149

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BLAST of Chy7G132280 vs. ExPASy TrEMBL
Match: A0A6J1CNM1 (HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111012664 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.1e-59
Identity = 139/149 (93.29%), Postives = 142/149 (95.30%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGA--AGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKAD KL+VKKGA  AG    KKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADAKLSVKKGAAKAGATRGKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKS+SDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 148
           EEDESEKSMSEVNDDEDGDEGSEEE+DDE
Sbjct: 121 EEDESEKSMSEVNDDEDGDEGSEEEEDDE 149

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BLAST of Chy7G132280 vs. ExPASy TrEMBL
Match: A0A5A7VCD7 (HMG1/2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003710 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 7.1e-59
Identity = 137/147 (93.20%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKGGKS         KLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE
Sbjct: 1   MKGGKS---------KLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA+E
Sbjct: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAADE 120

Query: 121 DESEKSMSEVNDDEDGDEGSEEEDDDE 148
           DESEKSMSEVNDDEDGDEGSEEEDDDE
Sbjct: 121 DESEKSMSEVNDDEDGDEGSEEEDDDE 138

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BLAST of Chy7G132280 vs. NCBI nr
Match: XP_008452973.1 (PREDICTED: HMG1/2-like protein [Cucumis melo])

HSP 1 Score: 258 bits (660), Expect = 3.17e-86
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKGGKSKSESKKADTKLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA+E
Sbjct: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAADE 120

Query: 121 DESEKSMSEVNDDEDGDEGSEEEDDDE 147
           DESEKSMSEVNDDEDGDEGSEEEDDDE
Sbjct: 121 DESEKSMSEVNDDEDGDEGSEEEDDDE 147

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BLAST of Chy7G132280 vs. NCBI nr
Match: XP_004145545.1 (HMG1/2-like protein [Cucumis sativus] >KAE8649961.1 hypothetical protein Csa_012361 [Cucumis sativus])

HSP 1 Score: 253 bits (645), Expect = 5.92e-84
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKGGKS+SESKKADTKLAVKKGAA KKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE
Sbjct: 1   MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE
Sbjct: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120

Query: 121 DESEKSMSEVNDDEDGDEGSEEEDD 145
           DESEKSMSEVNDDEDGDEGSEE+DD
Sbjct: 121 DESEKSMSEVNDDEDGDEGSEEDDD 145

[Close]

BLAST of Chy7G132280 vs. NCBI nr
Match: XP_038896795.1 (HMG1/2-like protein isoform X1 [Benincasa hispida])

HSP 1 Score: 248 bits (633), Expect = 4.42e-82
Identity = 142/149 (95.30%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAA--GKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKS+SKKAD KLAVKKGAA  GKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSDSKKADAKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSM+DAEKAPYIAKADKRK+EYEKNMKAYNKKQASGANA 
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKIEYEKNMKAYNKKQASGANAE 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 147
           EEDESEKSMSEVNDDEDGDEGSEEEDDDE
Sbjct: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 149

[Close]

BLAST of Chy7G132280 vs. NCBI nr
Match: XP_022936925.1 (HMG1/2-like protein [Cucurbita moschata] >XP_023536298.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo] >KAG7024101.1 hypothetical protein SDJN02_12914, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243 bits (619), Expect = 6.02e-80
Identity = 140/149 (93.96%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAA--GKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKLAVKKGAA  GKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDDE 147
           EEDESEKS+SEVNDDE+GDEGSEEEDDDE
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDDE 149

[Close]

BLAST of Chy7G132280 vs. NCBI nr
Match: XP_022975791.1 (HMG1/2-like protein [Cucurbita maxima])

HSP 1 Score: 241 bits (616), Expect = 1.78e-79
Identity = 139/148 (93.92%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAA--GKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKSKSESKKADTKLAVKKGAA  GKKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDD 146
           EEDESEKS+SEVNDDE+GDEGSEEEDDD
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDD 148

[Close]

BLAST of Chy7G132280 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 163.3 bits (412), Expect = 1.5e-40
Identity = 98/147 (66.67%), Postives = 123/147 (83.67%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKG KSK+E++   TKL+V K  A  KG+K A KDPNKPKRP+SAFFVFME+FR  + EE
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPA--KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEE 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           +P NK+V+AVGKA G+KWKS+SD+EKAPY+AKADKRKVEYEKNMKAYNKK   G    E+
Sbjct: 61  HPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--ED 120

Query: 121 DESEKSMSEVNDDEDGDEGSEEEDDDE 148
           +ES+KS+SEVND++D ++GSEEE+DD+
Sbjct: 121 EESDKSVSEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of Chy7G132280 vs. TAIR 10
Match: AT1G20693.3 (high mobility group B2 )

HSP 1 Score: 161.4 bits (407), Expect = 5.6e-40
Identity = 98/147 (66.67%), Postives = 121/147 (82.31%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAV-KKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNE 60
           MKG KSK+E++   +KL+V KK A G    K A KDPNKPKRPASAFFVFME+FR+ F +
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKK 60

Query: 61  ENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAE 120
           ENP NK+V+ VGKAAG KWKS+SD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    E
Sbjct: 61  ENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--E 120

Query: 121 EDESEKSMSEVNDDEDGDEGSEEEDDD 147
           ++ES+KS+SEVND++D ++GSEEEDDD
Sbjct: 121 DEESDKSVSEVNDEDDAEDGSEEEDDD 143

[Close]

BLAST of Chy7G132280 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-39
Identity = 95/142 (66.90%), Postives = 118/142 (83.10%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKG KSK+E++   TKL+V K  A  KG+K A KDPNKPKRP+SAFFVFME+FR  + EE
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPA--KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEE 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           +P NK+V+AVGKA G+KWKS+SD+EKAPY+AKADKRKVEYEKNMKAYNKK   G    E+
Sbjct: 61  HPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--ED 120

Query: 121 DESEKSMSEVNDDEDGDEGSEE 143
           +ES+KS+SEVND++D ++GSEE
Sbjct: 121 EESDKSVSEVNDEDDAEDGSEE 136

[Close]

BLAST of Chy7G132280 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 159.8 bits (403), Expect = 1.6e-39
Identity = 97/148 (65.54%), Postives = 122/148 (82.43%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAV-KKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNE 60
           MKG KSK+E++   +KL+V KK A G    K A KDPNKPKRPASAFFVFME+FR+ F +
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKK 60

Query: 61  ENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAE 120
           ENP NK+V+ VGKAAG KWKS+SD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    E
Sbjct: 61  ENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--E 120

Query: 121 EDESEKSMSEVNDDEDGDEGSEEEDDDE 148
           ++ES+KS+SEVND++D ++GSEEE+DD+
Sbjct: 121 DEESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of Chy7G132280 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 159.1 bits (401), Expect = 2.8e-39
Identity = 96/146 (65.75%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 1   MKGGKSKSESKKADTKLAV-KKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNE 60
           MKG KSK+E++   +KL+V KK A G    K A KDPNKPKRPASAFFVFME+FR+ F +
Sbjct: 1   MKGAKSKTETR--SSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKK 60

Query: 61  ENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAE 120
           ENP NK+V+ VGKAAG KWKS+SD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    E
Sbjct: 61  ENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--E 120

Query: 121 EDESEKSMSEVNDDEDGDEGSEEEDD 146
           ++ES+KS+SEVND++D ++GSEE+DD
Sbjct: 121 DEESDKSVSEVNDEDDAEDGSEEDDD 142

The following BLAST results are available for this feature:

BLAST of Chy7G132280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26585	4.6e-47	74.34	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P93047	2.1e-39	66.67	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
P40619	7.9e-39	65.99	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
O49596	2.3e-38	65.54	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P27347	7.7e-34	60.63	DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1	[more]

BLAST of Chy7G132280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BW96	2.3e-65	99.32	HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1	[more]
A0A6J1FF34	1.3e-60	93.96	HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111443365 PE=3 SV=1	[more]
A0A6J1IF57	2.9e-60	93.29	HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111476382 PE=3 SV=1	[more]
A0A6J1CNM1	1.1e-59	93.29	HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111012664 PE=3 SV=1	[more]
A0A5A7VCD7	7.1e-59	93.20	HMG1/2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G...	[more]

BLAST of Chy7G132280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452973.1	3.17e-86	99.32	PREDICTED: HMG1/2-like protein [Cucumis melo]	[more]
XP_004145545.1	5.92e-84	97.93	HMG1/2-like protein [Cucumis sativus] >KAE8649961.1 hypothetical protein Csa_012...	[more]
XP_038896795.1	4.42e-82	95.30	HMG1/2-like protein isoform X1 [Benincasa hispida]	[more]
XP_022936925.1	6.02e-80	93.96	HMG1/2-like protein [Cucurbita moschata] >XP_023536298.1 HMG1/2-like protein [Cu...	[more]
XP_022975791.1	1.78e-79	93.92	HMG1/2-like protein [Cucurbita maxima]	[more]

BLAST of Chy7G132280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20696.1	1.5e-40	66.67	high mobility group B3	[more]
AT1G20693.3	5.6e-40	66.67	high mobility group B2	[more]
AT1G20696.3	1.3e-39	66.90	high mobility group B3	[more]
AT1G20693.1	1.6e-39	65.54	high mobility group B2	[more]
AT1G20693.2	2.8e-39	65.75	high mobility group B2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 90..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..147
None	No IPR available	PANTHER	PTHR46261:SF22	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 1..146
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 39..105 e-value: 3.4086E-14 score: 61.1045
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 38..109 e-value: 2.9E-26 score: 103.3
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 39..108 e-value: 6.7E-24 score: 84.1
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 39..108 score: 20.588604
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 22..125 e-value: 9.9E-27 score: 95.2
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 26..113
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy7G132280.1	Chy7G132280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin