Chy7G131510 (gene) Cucumber (hystrix) v1

Overview


Name	Chy7G131510
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Nuclear nucleic acid-binding protein C1D
Location	chrH07: 2626531 .. 2627588 (+)
RNA-Seq Expression	Chy7G131510
Synteny	Chy7G131510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGAGGCGTTCGAGATTTCGCTGTTGTGCCGGAGAAAGTGATGGATTCAGTGAAGACGACATTGGACAATGTAGAACAAGTCCAACCTCACCTTATTTCCTTCCTGTCTATCGCCGAGCCTGAAGTCCTTGCTCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCTAGAGTCACTACCACTCTCTTCGCATGTAAAATTTTGTTTATTTCGAATAGTTCTTTATTATTAATTTTTTGTTATTGAGGTGAAGTTTTTGTTTGTTTTTGGTAATTTGCAGTGAAGTTGAGGTGTAGCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTGTAATTATTCTCATACCTTGTATCTGGTGATTAAAGCTGAAATTTGCTCACATGGGTTATCATGTTATTCTCTCGTTATTGTTCAAATGTTCGTTCTTATTTTTTGTTATGCATGTAGGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGGTATGTTTGACTTCTGATTTTTTTGAGTTTATTTCACCATCGTTTCCTTGTTTTTTTCCTTTTTTTTTTTTTTTTGCTTCCTTTAATGCTAGATTGATAATTTTGCATTTGAACTTGTTCATGAAGCGCCATTGAAGCGTTCTACTACCTTGAACTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTAACTCAAGGTTGGTTGAATTTGTTTGCTTTTTTATTTTGGGAAGGGGGGTTTCTGTGTCTGATTCCCTTTGATGAAGTAAATATTTCAACTTTTTTCAGAGCAAAAGCTGAGTATGAGGGATATCAGTAGAGGAAAGGGGCAAAAAATGAAGCAATTTGAGAGGAACGTACAGAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAACTGCTGCTAAGGAATTTCTTGAGAAAGCAGCGCGTGAGCTTCTTGGTGATTGTAATGGAGGTTTGCAGGGTCCATTGTGTGGGGATGCTTTAGATGATGATGCCCTGCAGGAGGATTGA

mRNA sequence

ATGGAGGGAGGCGTTCGAGATTTCGCTGTTGTGCCGGAGAAAGTGATGGATTCAGTGAAGACGACATTGGACAATGTAGAACAAGTCCAACCTCACCTTATTTCCTTCCTGTCTATCGCCGAGCCTGAAGTCCTTGCTCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCTAGAGTCACTACCACTCTCTTCGCATTGAAGTTGAGGTGTAGCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGCGCCATTGAAGCGTTCTACTACCTTGAACTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTAACTCAAGAGCAAAAGCTGAGTATGAGGGATATCAGTAGAGGAAAGGGGCAAAAAATGAAGCAATTTGAGAGGAACGTACAGAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAACTGCTGCTAAGGAATTTCTTGAGAAAGCAGCGCGTGAGCTTCTTGGTGATTGTAATGGAGGTTTGCAGGGTCCATTGTGTGGGGATGCTTTAGATGATGATGCCCTGCAGGAGGATTGA

Coding sequence (CDS)

ATGGAGGGAGGCGTTCGAGATTTCGCTGTTGTGCCGGAGAAAGTGATGGATTCAGTGAAGACGACATTGGACAATGTAGAACAAGTCCAACCTCACCTTATTTCCTTCCTGTCTATCGCCGAGCCTGAAGTCCTTGCTCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCTAGAGTCACTACCACTCTCTTCGCATTGAAGTTGAGGTGTAGCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTGAGAGATTAAGCTTGTATCAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGCGCCATTGAAGCGTTCTACTACCTTGAACTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTAACTCAAGAGCAAAAGCTGAGTATGAGGGATATCAGTAGAGGAAAGGGGCAAAAAATGAAGCAATTTGAGAGGAACGTACAGAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAACTGCTGCTAAGGAATTTCTTGAGAAAGCAGCGCGTGAGCTTCTTGGTGATTGTAATGGAGGTTTGCAGGGTCCATTGTGTGGGGATGCTTTAGATGATGATGCCCTGCAGGAGGATTGA

Protein sequence

MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQPHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQFERNVQKKRKYQSSEKQSVQTAAKEFLEKAARELLGDCNGGLQGPLCGDALDDDALQED*

Homology

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BLAST of Chy7G131510 vs. ExPASy Swiss-Prot
Match: Q3KPR1 (Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis OX=8355 GN=c1d PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 36/124 (29.03%), Postives = 70/124 (56.45%), Query Frame = 0


Query: 12  PEKVMDSVKTTLDNVEQVQPHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFALK 71
           P ++ + +    ++V  V   L   +S++  E+L +++PL++A+  L+ A    +LF + 
Sbjct: 12  PTEIHEYLMAFENSVGSVDEMLKKMMSVSRSELLQKIEPLEQAKLDLVSAYTLNSLFWIY 71

Query: 72  LRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPDL 131
           L   G++  +HP+K ELER+  Y ++++          K++  L+  AA RFI+H+L D 
Sbjct: 72  LTTQGINPKEHPVKEELERIRGYMNRVKEI-----TDRKKAARLDKGAARRFIKHALCDP 130

Query: 132 TQEQ 136
           T E+
Sbjct: 132 TSEE 130

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BLAST of Chy7G131510 vs. ExPASy Swiss-Prot
Match: Q5ZHS3 (Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.6e-08
Identity = 33/117 (28.21%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 12  PEKVMDSVKTTLDNVEQVQPHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFALK 71
           P ++ D + T   ++  V   L + +S++  E+L +++PL++A+  L+ A    ++F + 
Sbjct: 11  PTEIHDYLTTFEKSLTSVDEMLKTMMSVSRSELLQKLEPLEQAKLDLVSAYTLNSMFWVY 70

Query: 72  LRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSL 129
           L   G++  +HP+K ELER+  Y +K++       A  K+++ L+  AA+RF+ ++L
Sbjct: 71  LATQGINPKEHPVKQELERIRTYMNKVKEI-----ADKKKASKLDKGAASRFVRNAL 122

[Close]

BLAST of Chy7G131510 vs. ExPASy Swiss-Prot
Match: Q5XJ97 (Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-07
Identity = 36/135 (26.67%), Postives = 74/135 (54.81%), Query Frame = 0


Query: 2   EGGVRDFAVVPEKVMDSVKTTLDNVEQVQPHLISFLSIAEPEVLAQMQPLQRAQSMLLLA 61
           +  V D+   P ++ D++     ++  VQ  + + +S++  + L ++ PL++A+  L+ A
Sbjct: 4   DAAVEDY---PTEIEDNLNDFDSSLSSVQNMVQTLVSVSRSDRLLKLDPLEQAKLDLMSA 63

Query: 62  RVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAAT 121
               ++F + L   GV+  DHPIK ELER+  Y +K++      KA       ++ +AA+
Sbjct: 64  YALNSMFWMYLVTQGVNPKDHPIKQELERIRTYMNKVKEITDRRKA-----AHIDKEAAS 123

Query: 122 RFIEHSLPDLTQEQK 137
           RF+ ++L D   +++
Sbjct: 124 RFVRNALWDADDKKR 130

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BLAST of Chy7G131510 vs. ExPASy Swiss-Prot
Match: Q32PE4 (Nuclear nucleic acid-binding protein C1D OS=Bos taurus OX=9913 GN=C1D PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.7e-07
Identity = 31/117 (26.50%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 12  PEKVMDSVKTTLDNVEQVQPHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFALK 71
           P ++ + + T  +++  V   L + +S++  E+L ++ PL++A+  L+ A    ++F + 
Sbjct: 11  PVEIHEYLSTFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY 70

Query: 72  LRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSL 129
           L   GV+  +HP+K ELER+ +Y ++++          K++  L+  AA+RF++++L
Sbjct: 71  LATQGVNPKEHPVKQELERIRVYMNRVKEI-----TDKKKAGKLDRGAASRFVKNAL 122

[Close]

BLAST of Chy7G131510 vs. ExPASy Swiss-Prot
Match: Q7TSU0 (Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus OX=10029 GN=C1D PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.7e-07
Identity = 33/135 (24.44%), Postives = 76/135 (56.30%), Query Frame = 0


Query: 12  PEKVMDSVKTTLDNVEQVQPHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFALK 71
           P ++ +S+     ++  V   L + +S++  E+L ++ PL++A+  L+ A    ++F + 
Sbjct: 11  PVEIHESLSALESSLGAVDDMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY 70

Query: 72  LRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPDL 131
           L   GV+  +HP+K ELER+ +Y ++++          K++  L+  AA+RF++++L + 
Sbjct: 71  LATQGVNPKEHPVKQELERIRVYMNRVKEI-----TDKKKAAKLDRGAASRFVKNALWEP 130

Query: 132 TQEQKLSMRDISRGK 147
            Q+   ++ +  + K
Sbjct: 131 KQKNTPNVANKGKSK 140

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BLAST of Chy7G131510 vs. ExPASy TrEMBL
Match: A0A0A0L118 (Nuclear nucleic acid-binding protein C1D OS=Cucumis sativus OX=3659 GN=Csa_4G651890 PE=3 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.3e-106
Identity = 208/211 (98.58%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQPHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQ HLISFLSIAEP+VLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQFERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQ ERNVQKKRKYQSSEKQSVQTAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDCNGGLQGPLCGDALDDDALQED 212
           KAARELLGDCNGGLQGPLCGDALDDDALQED
Sbjct: 181 KAARELLGDCNGGLQGPLCGDALDDDALQED 211

[Close]

BLAST of Chy7G131510 vs. ExPASy TrEMBL
Match: A0A5D3D8Y3 (Nuclear nucleic acid-binding protein C1D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001320 PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.3e-103
Identity = 203/211 (96.21%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQPHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDFAVVPEKVMDSVKTTLDNVE VQ HLISFLSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           ARVTTTLFALKLRC+GVHLDDHPIKSELERLSLY+DKLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQFERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQ ERNVQKKRKYQSSEKQSVQTAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDCNGGLQGPLCGDALDDDALQED 212
           KAARELLGD NGGLQGPLCGDA DDDALQED
Sbjct: 181 KAARELLGDSNGGLQGPLCGDASDDDALQED 211

[Close]

BLAST of Chy7G131510 vs. ExPASy TrEMBL
Match: A0A1S3BUS6 (Nuclear nucleic acid-binding protein C1D OS=Cucumis melo OX=3656 GN=LOC103493742 PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.3e-103
Identity = 203/211 (96.21%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQPHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDFAVVPEKVMDSVKTTLDNVE VQ HLISFLSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           ARVTTTLFALKLRC+GVHLDDHPIKSELERLSLY+DKLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQFERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQ ERNVQKKRKYQSSEKQSVQTAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDCNGGLQGPLCGDALDDDALQED 212
           KAARELLGD NGGLQGPLCGDA DDDALQED
Sbjct: 181 KAARELLGDSNGGLQGPLCGDASDDDALQED 211

[Close]

BLAST of Chy7G131510 vs. ExPASy TrEMBL
Match: A0A6J1FIR0 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111445751 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.4e-94
Identity = 191/211 (90.52%), Postives = 197/211 (93.36%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQPHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVR+ AVVPEKVMDSVK TLDNVEQVQ HLISFLSIAEP+VLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           +R TTTLFALKLRCSGVH DDHPIKSELERLSLYQ+KLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQFERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQEQK  MRDISRGKG KMKQ ER VQKKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDCNGGLQGPLCGDALDDDALQED 212
           KAARELLGD NGGLQGPLCGDA +DD LQED
Sbjct: 181 KAARELLGDNNGGLQGPLCGDASNDD-LQED 210

[Close]

BLAST of Chy7G131510 vs. ExPASy TrEMBL
Match: A0A6J1F700 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111442695 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 8.3e-93
Identity = 188/210 (89.52%), Postives = 196/210 (93.33%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQPHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRD AVVPEKVMDSVKTTL+NVEQVQ HLIS LSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           ARVTTTLFALK+RCSGVH DDHPI +ELERLSLY+DKLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYEDKLERFIGLSKEPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQFERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQ+QK SMRDISRGKG KM+Q ERN+QKKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDCNGGLQGPLCGDALDDDALQE 211
           KAARELLGD NGGLQGPLCG A DD+ LQE
Sbjct: 181 KAARELLGDSNGGLQGPLCGVASDDE-LQE 209

[Close]

BLAST of Chy7G131510 vs. NCBI nr
Match: XP_004145496.1 (nuclear nucleic acid-binding protein C1D [Cucumis sativus] >KGN55423.1 hypothetical protein Csa_012234 [Cucumis sativus])

HSP 1 Score: 395 bits (1015), Expect = 3.00e-138
Identity = 208/211 (98.58%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQPHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQ HLISFLSIAEP+VLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQFERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQ ERNVQKKRKYQSSEKQSVQTAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDCNGGLQGPLCGDALDDDALQED 211
           KAARELLGDCNGGLQGPLCGDALDDDALQED
Sbjct: 181 KAARELLGDCNGGLQGPLCGDALDDDALQED 211

[Close]

BLAST of Chy7G131510 vs. NCBI nr
Match: XP_008452844.1 (PREDICTED: nuclear nucleic acid-binding protein C1D [Cucumis melo] >KAA0064576.1 nuclear nucleic acid-binding protein C1D [Cucumis melo var. makuwa] >TYK20014.1 nuclear nucleic acid-binding protein C1D [Cucumis melo var. makuwa])

HSP 1 Score: 384 bits (987), Expect = 5.56e-134
Identity = 203/211 (96.21%), Postives = 205/211 (97.16%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQPHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDFAVVPEKVMDSVKTTLDNVE VQ HLISFLSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           ARVTTTLFALKLRC+GVHLDDHPIKSELERLSLY+DKLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQFERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQ ERNVQKKRKYQSSEKQSVQTAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDCNGGLQGPLCGDALDDDALQED 211
           KAARELLGD NGGLQGPLCGDA DDDALQED
Sbjct: 181 KAARELLGDSNGGLQGPLCGDASDDDALQED 211

[Close]

BLAST of Chy7G131510 vs. NCBI nr
Match: XP_038897508.1 (nuclear nucleic acid-binding protein C1D [Benincasa hispida])

HSP 1 Score: 371 bits (952), Expect = 1.16e-128
Identity = 200/211 (94.79%), Postives = 202/211 (95.73%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQPHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRDFAVVPEKVMDSVK TLDNVEQVQ HLISFLSIAEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           A+VTTTLFALKLRCSGV LDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  AKVTTTLFALKLRCSGVLLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQFERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQEQKLSMRDISRGKG KMKQ ERNVQKKRKYQS+EKQSVQTAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGPKMKQLERNVQKKRKYQSNEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDCNGGLQGPLCGDALDDDALQED 211
           KAARELLGD NGGLQGPLCGDA DD  LQED
Sbjct: 181 KAARELLGDSNGGLQGPLCGDASDD-GLQED 210

[Close]

BLAST of Chy7G131510 vs. NCBI nr
Match: XP_022939979.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata] >XP_022939980.1 nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata])

HSP 1 Score: 353 bits (907), Expect = 8.35e-122
Identity = 191/211 (90.52%), Postives = 197/211 (93.36%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQPHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVR+ AVVPEKVMDSVK TLDNVEQVQ HLISFLSIAEP+VLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           +R TTTLFALKLRCSGVH DDHPIKSELERLSLYQ+KLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQFERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQEQK  MRDISRGKG KMKQ ER VQKKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDCNGGLQGPLCGDALDDDALQED 211
           KAARELLGD NGGLQGPLCGDA +DD LQED
Sbjct: 181 KAARELLGDNNGGLQGPLCGDASNDD-LQED 210

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BLAST of Chy7G131510 vs. NCBI nr
Match: KAG7037658.1 (Nuclear nucleic acid-binding protein C1D [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 351 bits (900), Expect = 9.73e-121
Identity = 190/211 (90.05%), Postives = 196/211 (92.89%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQPHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60
           MEGGVR+ AVVPEKVMDSVK TLDNVEQVQ HLISFLSIA P+VLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAGPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           +R TTTLFALKLRCSGVH DDHPIKSELERLSLYQ+KLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQFERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQEQK  MRDISRGKG KMKQ ER VQKKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDCNGGLQGPLCGDALDDDALQED 211
           KAARELLGD NGGLQGPLCGDA +DD LQED
Sbjct: 181 KAARELLGDNNGGLQGPLCGDASNDD-LQED 210

[Close]

BLAST of Chy7G131510 vs. TAIR 10
Match: AT5G25080.1 (Sas10/Utp3/C1D family )

HSP 1 Score: 205.3 bits (521), Expect = 4.9e-53
Identity = 110/198 (55.56%), Postives = 152/198 (76.77%), Query Frame = 0


Query: 10  VVPEKVMDSVKTTLDNVEQVQPHLISFLSIAEPEVLAQMQPLQRAQSMLLLARVTTTLFA 69
           VVPE  +++V  TL  +++++P L   L++AEPEVLA MQPLQRA++M LLA  TTTL+ 
Sbjct: 15  VVPESAIEAVNQTLAYLKELKPQLEQMLTLAEPEVLAAMQPLQRAKTMHLLAEATTTLYE 74

Query: 70  LKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLP 129
           L+LRC+GV  DDH +KSE+ER+++Y++K ++ +  SK PL+ +T LN QAATRFIEHSLP
Sbjct: 75  LRLRCTGVDPDDHRVKSEIERINVYREKFQKCVDQSKGPLRPTTVLNRQAATRFIEHSLP 134

Query: 130 DLTQEQKLSMRDISRGKGQKMKQFERNVQKKRKYQSSEKQSVQTAAKEFLEKAARELLGD 189
           DLT  QK S+RD+S+G+  +++  E +  +KRKYQS+EKQSVQ+AAK+FLEKAARE++G 
Sbjct: 135 DLTSTQKQSIRDLSKGEKSRIRYSETSA-RKRKYQSNEKQSVQSAAKDFLEKAAREIIGH 194

Query: 190 CNGGLQGPL--CGDALDD 206
              GL+GPL    D  DD
Sbjct: 195 NENGLKGPLVAAADGSDD 211

The following BLAST results are available for this feature:

BLAST of Chy7G131510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3KPR1	1.6e-08	29.03	Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis OX=8355 GN=c1d PE=2 S...	[more]
Q5ZHS3	3.6e-08	28.21	Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV...	[more]
Q5XJ97	1.0e-07	26.67	Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1	[more]
Q32PE4	6.7e-07	26.50	Nuclear nucleic acid-binding protein C1D OS=Bos taurus OX=9913 GN=C1D PE=2 SV=1	[more]
Q7TSU0	6.7e-07	24.44	Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus OX=10029 GN=C1D P...	[more]

BLAST of Chy7G131510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L118	1.3e-106	98.58	Nuclear nucleic acid-binding protein C1D OS=Cucumis sativus OX=3659 GN=Csa_4G651...	[more]
A0A5D3D8Y3	2.3e-103	96.21	Nuclear nucleic acid-binding protein C1D OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BUS6	2.3e-103	96.21	Nuclear nucleic acid-binding protein C1D OS=Cucumis melo OX=3656 GN=LOC103493742...	[more]
A0A6J1FIR0	4.4e-94	90.52	Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1F700	8.3e-93	89.52	Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Chy7G131510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145496.1	3.00e-138	98.58	nuclear nucleic acid-binding protein C1D [Cucumis sativus] >KGN55423.1 hypotheti...	[more]
XP_008452844.1	5.56e-134	96.21	PREDICTED: nuclear nucleic acid-binding protein C1D [Cucumis melo] >KAA0064576.1...	[more]
XP_038897508.1	1.16e-128	94.79	nuclear nucleic acid-binding protein C1D [Benincasa hispida]	[more]
XP_022939979.1	8.35e-122	90.52	nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata] >XP_022939980...	[more]
KAG7037658.1	9.73e-121	90.05	Nuclear nucleic acid-binding protein C1D [Cucurbita argyrosperma subsp. argyrosp...	[more]

BLAST of Chy7G131510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25080.1	4.9e-53	55.56	Sas10/Utp3/C1D family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007146	Sas10/Utp3/C1D	PFAM	PF04000	Sas10_Utp3	coord: 21..97 e-value: 1.6E-7 score: 31.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..166
None	No IPR available	PANTHER	PTHR15341:SF3	NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1D	coord: 10..198
IPR011082	Exosome-associated factor Rrp47/DNA strand repair C1D	PANTHER	PTHR15341	SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR	coord: 10..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy7G131510.1	Chy7G131510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000178	exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003723	RNA binding