Chy6G126700 (gene) Cucumber (hystrix) v1

Overview
NameChy6G126700
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH06: 25744164 .. 25744322 (-)
RNA-Seq ExpressionChy6G126700
SyntenyChy6G126700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGACAACAAGGTGGCTCCGATCGGTCACCGCCGTGCCGTATCGTTCGGGGGGAAGGAGCCGAGATTGATTAGAAGCTCAGGGATGAGGAGGGATTGGAGCTTTGAGGATCTCAGAGCTATTCGTGAGGAAAAGGAACCTTCTCCCAATTCCTAA

mRNA sequence

ATGGCGGACAACAAGGTGGCTCCGATCGGTCACCGCCGTGCCGTATCGTTCGGGGGGAAGGAGCCGAGATTGATTAGAAGCTCAGGGATGAGGAGGGATTGGAGCTTTGAGGATCTCAGAGCTATTCGTGAGGAAAAGGAACCTTCTCCCAATTCCTAA

Coding sequence (CDS)

ATGGCGGACAACAAGGTGGCTCCGATCGGTCACCGCCGTGCCGTATCGTTCGGGGGGAAGGAGCCGAGATTGATTAGAAGCTCAGGGATGAGGAGGGATTGGAGCTTTGAGGATCTCAGAGCTATTCGTGAGGAAAAGGAACCTTCTCCCAATTCCTAA

Protein sequence

MADNKVAPIGHRRAVSFGGKEPRLIRSSGMRRDWSFEDLRAIREEKEPSPNS*
Homology
BLAST of Chy6G126700 vs. ExPASy TrEMBL
Match: A0A0A0L198 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011635 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.4e-20
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 1   MADNKVAPIGHRRAVSFGGKEPRLIRSSGMRRDWSFEDLRAIREEKEPSPNS 53
           MADNKVAPIGHRRAVSFGGKEPRLIRSSGMRRDWSFEDLRAIREEK+PSPNS
Sbjct: 64  MADNKVAPIGHRRAVSFGGKEPRLIRSSGMRRDWSFEDLRAIREEKQPSPNS 115

BLAST of Chy6G126700 vs. ExPASy TrEMBL
Match: A0A5A7UAS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001620 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.4e-19
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1   MADNKVAPIGHRRAVSFGGKEPRLIRSSGMRRDWSFEDLRAIREEKEPSPNS 53
           MADNKVAP+ HRRAVSFGGKEPRL+RSSGMRRDWSFEDLR IREEKEPSPNS
Sbjct: 57  MADNKVAPVCHRRAVSFGGKEPRLVRSSGMRRDWSFEDLRTIREEKEPSPNS 108

BLAST of Chy6G126700 vs. ExPASy TrEMBL
Match: A0A1S3BJN6 (uncharacterized protein LOC103490783 OS=Cucumis melo OX=3656 GN=LOC103490783 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.4e-19
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1   MADNKVAPIGHRRAVSFGGKEPRLIRSSGMRRDWSFEDLRAIREEKEPSPNS 53
           MADNKVAP+ HRRAVSFGGKEPRL+RSSGMRRDWSFEDLR IREEKEPSPNS
Sbjct: 57  MADNKVAPVCHRRAVSFGGKEPRLVRSSGMRRDWSFEDLRTIREEKEPSPNS 108

BLAST of Chy6G126700 vs. ExPASy TrEMBL
Match: A0A6J1GL99 (uncharacterized protein LOC111454968 OS=Cucurbita moschata OX=3662 GN=LOC111454968 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.5e-14
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 0

Query: 3   DNKVAPIGHRR-----AVSFG--GKEPRLIRSSGMRRDWSFEDLRAIREEKEPSPNS 53
           +NKVAP+GHRR     AV+FG  GKEPRLIRS+GMRRDWSFEDLRAIRE+KE SPNS
Sbjct: 60  ENKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDKESSPNS 116

BLAST of Chy6G126700 vs. ExPASy TrEMBL
Match: A0A6J1L834 (uncharacterized protein LOC111500186 OS=Cucurbita maxima OX=3661 GN=LOC111500186 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.0e-07
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 1   MADNKVAPIGHRR-----AVSFGGKEPRLIRSSGMRRDWSFEDLRAIREEK 47
           + +++  P+  RR      +S G KEP+L+RSSGMRRDWSFEDLRAIREEK
Sbjct: 59  LPEDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK 109

BLAST of Chy6G126700 vs. NCBI nr
Match: XP_031737872.1 (uncharacterized protein LOC116402546 [Cucumis sativus])

HSP 1 Score: 107 bits (268), Expect = 1.39e-28
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 1   MADNKVAPIGHRRAVSFGGKEPRLIRSSGMRRDWSFEDLRAIREEKEPSPNS 52
           MADNKVAPIGHRRAVSFGGKEPRLIRSSGMRRDWSFEDLRAIREEK+PSPNS
Sbjct: 68  MADNKVAPIGHRRAVSFGGKEPRLIRSSGMRRDWSFEDLRAIREEKQPSPNS 119

BLAST of Chy6G126700 vs. NCBI nr
Match: XP_008448684.1 (PREDICTED: uncharacterized protein LOC103490783 [Cucumis melo] >KAA0053043.1 uncharacterized protein E6C27_scaffold344G001590 [Cucumis melo var. makuwa] >TYK11498.1 uncharacterized protein E5676_scaffold139G001620 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (256), Expect = 6.82e-27
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1   MADNKVAPIGHRRAVSFGGKEPRLIRSSGMRRDWSFEDLRAIREEKEPSPNS 52
           MADNKVAP+ HRRAVSFGGKEPRL+RSSGMRRDWSFEDLR IREEKEPSPNS
Sbjct: 57  MADNKVAPVCHRRAVSFGGKEPRLVRSSGMRRDWSFEDLRTIREEKEPSPNS 108

BLAST of Chy6G126700 vs. NCBI nr
Match: XP_038905810.1 (uncharacterized protein LOC120091761 [Benincasa hispida])

HSP 1 Score: 92.4 bits (228), Expect = 4.18e-22
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 0

Query: 1   MADNKVAPIGHRRAVSFGGKEPRLIRSSGMRRDWSFEDLRAIREEKEPS 49
           + +NKVAPI HRRAVSFGGKEPRL+RSSGMRRDWSFEDLR IREE+EPS
Sbjct: 60  LPENKVAPISHRRAVSFGGKEPRLVRSSGMRRDWSFEDLRTIREEREPS 108

BLAST of Chy6G126700 vs. NCBI nr
Match: KAE8650028.1 (hypothetical protein Csa_011525 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 5.36e-22
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0

Query: 1   MADNKVAPIGHRRAVSFGGKEPRLIRSSGMRRDWSFEDLRAIR 43
           MADNKVAPIGHRRAVSFGGKEPRLIRSSGMRRDWSFEDLRAIR
Sbjct: 68  MADNKVAPIGHRRAVSFGGKEPRLIRSSGMRRDWSFEDLRAIR 110

BLAST of Chy6G126700 vs. NCBI nr
Match: XP_023539506.1 (uncharacterized protein LOC111800149 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.1 bits (209), Expect = 1.20e-19
Identity = 45/57 (78.95%), Postives = 48/57 (84.21%), Query Frame = 0

Query: 3   DNKVAPIGHRR-----AVSFGG--KEPRLIRSSGMRRDWSFEDLRAIREEKEPSPNS 52
           +NKVAP GHRR     AV+FGG  KEPRLIRS+GMRRDWSFEDLRAIREEKE SPNS
Sbjct: 60  ENKVAPTGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEKESSPNS 116

BLAST of Chy6G126700 vs. TAIR 10
Match: AT2G35215.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46770.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 8.0e-05
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 0

Query: 10 GHRRAVS-----FGG-KEPRLIRSSGMRRDWSFEDLRAIREE 46
          GHRR  S     +G   EP+L+RSSG+RRDWSFEDL+  +++
Sbjct: 56 GHRRLYSADIMVYGELDEPKLVRSSGIRRDWSFEDLKKHKDQ 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L1981.4e-2098.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011635 PE=4 SV=1[more]
A0A5A7UAS33.4e-1992.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BJN63.4e-1992.31uncharacterized protein LOC103490783 OS=Cucumis melo OX=3656 GN=LOC103490783 PE=... [more]
A0A6J1GL999.5e-1477.19uncharacterized protein LOC111454968 OS=Cucurbita moschata OX=3662 GN=LOC1114549... [more]
A0A6J1L8343.0e-0758.82uncharacterized protein LOC111500186 OS=Cucurbita maxima OX=3661 GN=LOC111500186... [more]
Match NameE-valueIdentityDescription
XP_031737872.11.39e-2898.08uncharacterized protein LOC116402546 [Cucumis sativus][more]
XP_008448684.16.82e-2792.31PREDICTED: uncharacterized protein LOC103490783 [Cucumis melo] >KAA0053043.1 unc... [more]
XP_038905810.14.18e-2285.71uncharacterized protein LOC120091761 [Benincasa hispida][more]
KAE8650028.15.36e-22100.00hypothetical protein Csa_011525 [Cucumis sativus][more]
XP_023539506.11.20e-1978.95uncharacterized protein LOC111800149 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT2G35215.18.0e-0552.38unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy6G126700.1Chy6G126700.1mRNA