Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCATTGTTCCCTCTAAAGATGGTATTGAGAAACAACATTGTCTTTACAATCTCACGAACAACAAAATCCGAACCGTTGATTTCAAATTCTGCTTCAACAAAAGGTGTTGTGGTTCATCTTTTGGTTGGTTGATCATGCATGAAGAGACATTTGATGTTACATTATTCAACCCTTTTTCTGGTAGTGTGATCCGTCTTCCTCCGCTTCCTAAAGAACATGAGGACGACGTTTACTATCCATGGTACATGTTGAAAGAAATAATTACTATCAATGTTTATTGTTGAGTCTTCTAAGAAAGAGCTTTTACTCATTAGAAGGGTTATTTCAGTAGAGGATCATGAACAGCCAGACTCTGGTATTACAACGTTGGTTAAAACTATCAAGTTCGTTGCCTACAAACATACTCATACATGTAAAGATGGGACACAAAGGTTTCAAGAGGTGAAGAGTTTAGATGATGATGCTGTGTTTATTGGTGAACAATCCATCTGTATTTCAACGAAGAATTTTCCTACATGTTTACCAAATCGTATATATTATACAGATAACCGATACTATTCTCACGATCCTTTTGTAATTGGACCTCAAGATATAGGAATTTACAATCTAGAAGATGGAAGATTCAGTGAACATTACATCCCAGATATTACTCACCAGAATTTGCCTTCACCGGCCCATATGGATTGTCCCAACCATATACTACAAAGATTCTGA
mRNA sequence
ATGCTCATTGTTCCCTCTAAAGATGGTATTGAGAAACAACATTGTCTTTACAATCTCACGAACAACAAAATCCGAACCGTTGATTTCAAATTCTGCTTCAACAAAAGGTGTTGTGGTTCATCTTTTGGTTGGTTGATCATGCATGAAGAGACATTTGATGTTACATTATTCAACCCTTTTTCTGGTAGTGTGATCCGTCTTCCTCCGCTTCCTAAAGAACATGAGGACGACGTTTACTATCCATGGGTTATTTCAGTAGAGGATCATGAACAGCCAGACTCTGGTATTACAACGTTGGTTAAAACTATCAAGTTCGTTGCCTACAAACATACTCATACATGTAAAGATGGGACACAAAGGTTTCAAGAGGTGAAGAGTTTAGATGATGATGCTGTGTTTATTGGTGAACAATCCATCTGTATTTCAACGAAGAATTTTCCTACATGTTTACCAAATCGTATATATTATACAGATAACCGATACTATTCTCACGATCCTTTTGTAATTGGACCTCAAGATATAGGAATTTACAATCTAGAAGATGGAAGATTCAGTGAACATTACATCCCAGATATTACTCACCAGAATTTGCCTTCACCGGCCCATATGGATTGTCCCAACCATATACTACAAAGATTCTGA
Coding sequence (CDS)
ATGCTCATTGTTCCCTCTAAAGATGGTATTGAGAAACAACATTGTCTTTACAATCTCACGAACAACAAAATCCGAACCGTTGATTTCAAATTCTGCTTCAACAAAAGGTGTTGTGGTTCATCTTTTGGTTGGTTGATCATGCATGAAGAGACATTTGATGTTACATTATTCAACCCTTTTTCTGGTAGTGTGATCCGTCTTCCTCCGCTTCCTAAAGAACATGAGGACGACGTTTACTATCCATGGGTTATTTCAGTAGAGGATCATGAACAGCCAGACTCTGGTATTACAACGTTGGTTAAAACTATCAAGTTCGTTGCCTACAAACATACTCATACATGTAAAGATGGGACACAAAGGTTTCAAGAGGTGAAGAGTTTAGATGATGATGCTGTGTTTATTGGTGAACAATCCATCTGTATTTCAACGAAGAATTTTCCTACATGTTTACCAAATCGTATATATTATACAGATAACCGATACTATTCTCACGATCCTTTTGTAATTGGACCTCAAGATATAGGAATTTACAATCTAGAAGATGGAAGATTCAGTGAACATTACATCCCAGATATTACTCACCAGAATTTGCCTTCACCGGCCCATATGGATTGTCCCAACCATATACTACAAAGATTCTGA
Protein sequence
MLIVPSKDGIEKQHCLYNLTNNKIRTVDFKFCFNKRCCGSSFGWLIMHEETFDVTLFNPFSGSVIRLPPLPKEHEDDVYYPWVISVEDHEQPDSGITTLVKTIKFVAYKHTHTCKDGTQRFQEVKSLDDDAVFIGEQSICISTKNFPTCLPNRIYYTDNRYYSHDPFVIGPQDIGIYNLEDGRFSEHYIPDITHQNLPSPAHMDCPNHILQRF*
Homology
BLAST of Chy6G125040 vs. ExPASy TrEMBL
Match:
A0A1S3BM31 (uncharacterized protein LOC103491129 OS=Cucumis melo OX=3656 GN=LOC103491129 PE=4 SV=1)
HSP 1 Score: 345.9 bits (886), Expect = 1.2e-91
Identity = 183/325 (56.31%), Postives = 190/325 (58.46%), Query Frame = 0
Query: 1 MLIVPS-KDGIEKQHCLYNLTNNKIRTVDFKFCFNKRCCGSSFGWLIMHEETFDVTLFNP 60
MLIVPS KDGIEKQHCLY++TNNKIRT DFKFCFNKRCCGSSFGWLIMHEETFDVTLFNP
Sbjct: 63 MLIVPSIKDGIEKQHCLYDVTNNKIRTADFKFCFNKRCCGSSFGWLIMHEETFDVTLFNP 122
Query: 61 FSGSVIRLPPLPKEHEDDVYYPW------------------------------------- 120
FSG+VIRLPPLPKEHEDD YYPW
Sbjct: 123 FSGTVIRLPPLPKEHEDDDYYPWYILKAILTKDPSLYPNDYMVVAIYGISTKLCLIEAKS 182
Query: 121 ------------------------------------------------------------ 180
Sbjct: 183 KIWKKYDIPPGQDYNPFEDVYVCNDTLYASHLDDVQLNLWKVEVDENSPISLQRVAIILQ 242
Query: 181 --------------------------VISVEDHEQPDSGI-TTLVKTIKFVAYKHTHTCK 201
++SVEDHEQPDS I TTLVKTIKFVAYKHTHTC
Sbjct: 243 PSLSTHDFGPMFIVESSKKELLLIRRILSVEDHEQPDSDITTTLVKTIKFVAYKHTHTCN 302
BLAST of Chy6G125040 vs. ExPASy TrEMBL
Match:
A0A5D3D7D4 (F-box protein SKIP23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00980 PE=4 SV=1)
HSP 1 Score: 332.4 bits (851), Expect = 1.4e-87
Identity = 175/318 (55.03%), Postives = 182/318 (57.23%), Query Frame = 0
Query: 1 MLIVPSKDGIEKQHCLYNLTNNKIRTVDFKFCFNKRCCGSSFGWLIMHEETFDVTLFNPF 60
MLIVPSKD IEKQHCLY++TNNKIRT DFKFCFNKRCCGSSFGWLIMHEETFDVTLFNPF
Sbjct: 63 MLIVPSKDDIEKQHCLYDVTNNKIRTADFKFCFNKRCCGSSFGWLIMHEETFDVTLFNPF 122
Query: 61 SGSVIRLPPLPKEHEDDVYYPW-------------------------------------- 120
SG+VIRLPPLPKEHEDD YYPW
Sbjct: 123 SGTVIRLPPLPKEHEDDDYYPWYILKAILTKDPSLYPNDYMVVAIYGISTKLCLIEAKSK 182
Query: 121 ------------------------------------------------------------ 180
Sbjct: 183 IWKKYDIPPGQDYNPFEDVYVCNDTLYASHLDDVQLNLWEVEVDENSPISLQRIAVTLQP 242
Query: 181 -------------------------VISVEDHEQPDSGI-TTLVKTIKFVAYKHTHTCKD 195
++SVEDHEQPDS I TTLVKTIKFVAYKHTHTC D
Sbjct: 243 SLSRHDFGPMFIVESSKKELLLIRRILSVEDHEQPDSDITTTLVKTIKFVAYKHTHTCND 302
BLAST of Chy6G125040 vs. ExPASy TrEMBL
Match:
A0A0A0L1U5 (DUF295 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038180 PE=4 SV=1)
HSP 1 Score: 230.3 bits (586), Expect = 7.4e-57
Identity = 134/292 (45.89%), Postives = 141/292 (48.29%), Query Frame = 0
Query: 19 LTNNKIRTVDFKFCFNKRCCGSSFGWLIMHEETFDVTLFNPFSGSVIRLPPLPKEHEDDV 78
+ +N T D F F WL+ H FD TL NPFSGSVIRLPPLPKEHEDDV
Sbjct: 20 MISNSASTKDVVFIF----------WLVDH--AFDFTLLNPFSGSVIRLPPLPKEHEDDV 79
Query: 79 YYPW-------------------------------------------------------- 138
Y+PW
Sbjct: 80 YHPWYMLKAILTKDPSLYPNDYMVVAIYGISTKLCLIEAKSKIWKKYDIPPGQDYNPFED 139
Query: 139 ------------------------------------------------------------ 188
Sbjct: 140 VYVCNNNLYASHLDDVQLNLWKVEVDENSPISLQRVAVILQPSLSTHDFGPMFIVESSKK 199
BLAST of Chy6G125040 vs. ExPASy TrEMBL
Match:
A0A6J1E923 (probable F-box protein At4g22165 OS=Cucurbita moschata OX=3662 GN=LOC111431007 PE=4 SV=1)
HSP 1 Score: 213.8 bits (543), Expect = 7.2e-52
Identity = 131/338 (38.76%), Postives = 160/338 (47.34%), Query Frame = 0
Query: 1 MLIVPSKDGIEKQHCLYNLTNNKIRTVDFKFCFNKRCCGSSFGWLIMHEETFDVTLFNPF 60
MLIVPSKDG+EKQHCLY+LT N +R VDFKFCFNKRCCGSSFGWLIM +ET + LFNPF
Sbjct: 63 MLIVPSKDGLEKQHCLYDLTRNVVRPVDFKFCFNKRCCGSSFGWLIMRDETLGIVLFNPF 122
Query: 61 SGSVIRLPPL---------------------PKEHEDD---------------------- 120
SG+VI LPP+ P + +D
Sbjct: 123 SGTVIYLPPVATYDDIEWIPGHIIKAILTKDPSLYPNDYMVVAIFGTYKRLCLIRANDKT 182
Query: 121 --VYYP-------------------------WVISVEDHEQPDSGITTLVK--------- 180
YYP W + VE+ E S I VK
Sbjct: 183 WTYYYPTPNIPFNDINICGDTLYATEYYLNVWKVEVENSEDESSSICISVKMVHTIEMGH 242
Query: 181 -----------------------------TIKFVAYKHTHTCKDGTQRFQEVKSLDDDAV 214
T+ F YK H +D +R EVKSLD DA+
Sbjct: 243 LVTSYITESSKGELLVVLRILDSGEEQFETVDFEVYKLIHENEDEMRRAVEVKSLDGDAI 302
BLAST of Chy6G125040 vs. ExPASy TrEMBL
Match:
A0A6J1E5P5 (probable F-box protein At1g65740 OS=Cucurbita moschata OX=3662 GN=LOC111431012 PE=4 SV=1)
HSP 1 Score: 208.8 bits (530), Expect = 2.3e-50
Identity = 124/313 (39.62%), Postives = 152/313 (48.56%), Query Frame = 0
Query: 1 MLIVPSKDGIEKQHCLYNLTNNKIRTVDFKFCFNKRCCGSSFGWLIMHEETFDVTLFNPF 60
MLIVPSKDG+EKQHCLY+LT N +R+VDFKFCFNKRCCGSSFGWLIM +ET + LFNPF
Sbjct: 63 MLIVPSKDGLEKQHCLYDLTTNIVRSVDFKFCFNKRCCGSSFGWLIMRDETLGIVLFNPF 122
Query: 61 SGSVIRLPPL---------------------PKEHEDD---------------------- 120
SG+VI LPP+ P + +D
Sbjct: 123 SGAVIYLPPVATYDDIEWIPGHIIKAILTKDPSLYPNDYMVVGIFGTYKRLCLIRANDKT 182
Query: 121 --VYYP-------------------------WVISVEDHEQPDSGITTLVK--------- 180
YYP W + V++ E S I+ VK
Sbjct: 183 WTYYYPTPNIPFNDINICRDTIYATENDLDVWKVEVQNSEDESSSISISVKMVHTKRIRY 242
Query: 181 -----------------------------TIKFVAYKHTHTCKDGTQRFQEVKSLDDDAV 201
T+ F YK H +D +R EVKSLD DA+
Sbjct: 243 IGTAYITESSKGELLVVLRIFNSGEEQFETVDFEVYKLIHENEDELRRAVEVKSLDGDAI 302
BLAST of Chy6G125040 vs. NCBI nr
Match:
XP_008449178.1 (PREDICTED: uncharacterized protein LOC103491129 [Cucumis melo])
HSP 1 Score: 344 bits (883), Expect = 2.71e-115
Identity = 183/325 (56.31%), Postives = 190/325 (58.46%), Query Frame = 0
Query: 1 MLIVPS-KDGIEKQHCLYNLTNNKIRTVDFKFCFNKRCCGSSFGWLIMHEETFDVTLFNP 60
MLIVPS KDGIEKQHCLY++TNNKIRT DFKFCFNKRCCGSSFGWLIMHEETFDVTLFNP
Sbjct: 63 MLIVPSIKDGIEKQHCLYDVTNNKIRTADFKFCFNKRCCGSSFGWLIMHEETFDVTLFNP 122
Query: 61 FSGSVIRLPPLPKEHEDDVYYPW------------------------------------- 120
FSG+VIRLPPLPKEHEDD YYPW
Sbjct: 123 FSGTVIRLPPLPKEHEDDDYYPWYILKAILTKDPSLYPNDYMVVAIYGISTKLCLIEAKS 182
Query: 121 ------------------------------------------------------------ 180
Sbjct: 183 KIWKKYDIPPGQDYNPFEDVYVCNDTLYASHLDDVQLNLWKVEVDENSPISLQRVAIILQ 242
Query: 181 --------------------------VISVEDHEQPDSGITT-LVKTIKFVAYKHTHTCK 200
++SVEDHEQPDS ITT LVKTIKFVAYKHTHTC
Sbjct: 243 PSLSTHDFGPMFIVESSKKELLLIRRILSVEDHEQPDSDITTTLVKTIKFVAYKHTHTCN 302
BLAST of Chy6G125040 vs. NCBI nr
Match:
TYK19445.1 (F-box protein SKIP23-like [Cucumis melo var. makuwa])
HSP 1 Score: 331 bits (848), Expect = 2.79e-110
Identity = 175/318 (55.03%), Postives = 182/318 (57.23%), Query Frame = 0
Query: 1 MLIVPSKDGIEKQHCLYNLTNNKIRTVDFKFCFNKRCCGSSFGWLIMHEETFDVTLFNPF 60
MLIVPSKD IEKQHCLY++TNNKIRT DFKFCFNKRCCGSSFGWLIMHEETFDVTLFNPF
Sbjct: 63 MLIVPSKDDIEKQHCLYDVTNNKIRTADFKFCFNKRCCGSSFGWLIMHEETFDVTLFNPF 122
Query: 61 SGSVIRLPPLPKEHEDDVYYPW-------------------------------------- 120
SG+VIRLPPLPKEHEDD YYPW
Sbjct: 123 SGTVIRLPPLPKEHEDDDYYPWYILKAILTKDPSLYPNDYMVVAIYGISTKLCLIEAKSK 182
Query: 121 ------------------------------------------------------------ 180
Sbjct: 183 IWKKYDIPPGQDYNPFEDVYVCNDTLYASHLDDVQLNLWEVEVDENSPISLQRIAVTLQP 242
Query: 181 -------------------------VISVEDHEQPDSGITT-LVKTIKFVAYKHTHTCKD 194
++SVEDHEQPDS ITT LVKTIKFVAYKHTHTC D
Sbjct: 243 SLSRHDFGPMFIVESSKKELLLIRRILSVEDHEQPDSDITTTLVKTIKFVAYKHTHTCND 302
BLAST of Chy6G125040 vs. NCBI nr
Match:
XP_011652722.1 (uncharacterized protein LOC105435065 [Cucumis sativus])
HSP 1 Score: 229 bits (585), Expect = 3.29e-71
Identity = 134/292 (45.89%), Postives = 141/292 (48.29%), Query Frame = 0
Query: 19 LTNNKIRTVDFKFCFNKRCCGSSFGWLIMHEETFDVTLFNPFSGSVIRLPPLPKEHEDDV 78
+ +N T D F F WL+ H FD TL NPFSGSVIRLPPLPKEHEDDV
Sbjct: 1 MISNSASTKDVVFIF----------WLVDHA--FDFTLLNPFSGSVIRLPPLPKEHEDDV 60
Query: 79 YYPW-------------------------------------------------------- 138
Y+PW
Sbjct: 61 YHPWYMLKAILTKDPSLYPNDYMVVAIYGISTKLCLIEAKSKIWKKYDIPPGQDYNPFED 120
Query: 139 ------------------------------------------------------------ 187
Sbjct: 121 VYVCNNNLYASHLDDVQLNLWKVEVDENSPISLQRVAVILQPSLSTHDFGPMFIVESSKK 180
BLAST of Chy6G125040 vs. NCBI nr
Match:
KAE8650083.1 (hypothetical protein Csa_011273 [Cucumis sativus])
HSP 1 Score: 214 bits (544), Expect = 1.44e-64
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 0
Query: 83 VISVEDHEQPDSGITTLVKTIKFVAYKHTHTCKDGTQRFQEVKSLDDDAVFIGEQSICIS 142
V+SVEDHEQPDSGITTLVKTIKFVAYKHT TCKDGTQRF+EVKSLDDDAVFIGEQSICIS
Sbjct: 207 VLSVEDHEQPDSGITTLVKTIKFVAYKHTRTCKDGTQRFEEVKSLDDDAVFIGEQSICIS 266
Query: 143 TKNFPTCLPNRIYYTDNRYYSHDPFVIGPQDIGIYNLEDGRFSEH 187
TKNFPTCLPNRIYYTDNRYYSHDPFV GPQDIGIYN+EDG F EH
Sbjct: 267 TKNFPTCLPNRIYYTDNRYYSHDPFVNGPQDIGIYNVEDGSFGEH 311
BLAST of Chy6G125040 vs. NCBI nr
Match:
XP_023552955.1 (probable F-box protein At1g44080 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 213 bits (543), Expect = 3.80e-64
Identity = 129/326 (39.57%), Postives = 160/326 (49.08%), Query Frame = 0
Query: 1 MLIVPSKDGIEKQHCLYNLTNNKIRTVDFKFCFNKRCCGSSFGWLIMHEETFDVTLFNPF 60
MLIVPS+DG+EKQHCLY+LT N +R VDFKFCFNKRCCGSSFGWLIM +ETF + LFNPF
Sbjct: 63 MLIVPSEDGLEKQHCLYDLTRNIVRPVDFKFCFNKRCCGSSFGWLIMRDETFGIVLFNPF 122
Query: 61 SGSVIRLPPL---------------------PKEHEDDV--------------------- 120
SG+VI LPP+ P + +D
Sbjct: 123 SGTVIYLPPVATYDDIEWIPGHIIKAILTKDPSLYPNDYMVVAIFGTYKRLCLIRANDKT 182
Query: 121 ---YYP-------------------------WVISVEDHEQPDSGITTLVK--------- 180
YYP W + VE+ E S I V+
Sbjct: 183 WTYYYPTPNIPFNDINICGDTLYATEYYLNVWKVEVENSEDESSSICISVEMVHTIEMGH 242
Query: 181 -----------------------------TIKFVAYKHTHTCKDGTQRFQEVKSLDDDAV 213
T+ F YK H +D +R EVKSLD DA+
Sbjct: 243 MVTSYITESSKGELLVVLRILDSGEEQFETVDFEVYKLIHENEDEMRRAVEVKSLDGDAI 302
BLAST of Chy6G125040 vs. TAIR 10
Match:
AT2G17690.1 (F-box family protein with a domain of unknown function (DUF295) )
HSP 1 Score: 45.1 bits (105), Expect = 8.5e-05
Identity = 27/83 (32.53%), Postives = 42/83 (50.60%), Query Frame = 0
Query: 101 KTIKFVAYKHTHTCKDGTQRFQEVKSLDDDAVFIG-EQSICISTKNFPTCLPNRIYYTDN 160
KTI F YK+ + ++ EVKSL D A+ I + +S F CLPN IY+TD
Sbjct: 332 KTIGFKVYKN----DEELLKWVEVKSLGDKAIVIATDACFSVSAHEFYGCLPNSIYFTDK 391
Query: 161 RYYSHDPFVIGPQDIGIYNLEDG 183
+ +++ ++ L+DG
Sbjct: 392 K----------EEEVKVFKLDDG 400
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3BM31 | 1.2e-91 | 56.31 | uncharacterized protein LOC103491129 OS=Cucumis melo OX=3656 GN=LOC103491129 PE=... | [more] |
A0A5D3D7D4 | 1.4e-87 | 55.03 | F-box protein SKIP23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... | [more] |
A0A0A0L1U5 | 7.4e-57 | 45.89 | DUF295 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038180 PE=4... | [more] |
A0A6J1E923 | 7.2e-52 | 38.76 | probable F-box protein At4g22165 OS=Cucurbita moschata OX=3662 GN=LOC111431007 P... | [more] |
A0A6J1E5P5 | 2.3e-50 | 39.62 | probable F-box protein At1g65740 OS=Cucurbita moschata OX=3662 GN=LOC111431012 P... | [more] |
Match Name | E-value | Identity | Description | |
XP_008449178.1 | 2.71e-115 | 56.31 | PREDICTED: uncharacterized protein LOC103491129 [Cucumis melo] | [more] |
TYK19445.1 | 2.79e-110 | 55.03 | F-box protein SKIP23-like [Cucumis melo var. makuwa] | [more] |
XP_011652722.1 | 3.29e-71 | 45.89 | uncharacterized protein LOC105435065 [Cucumis sativus] | [more] |
KAE8650083.1 | 1.44e-64 | 93.33 | hypothetical protein Csa_011273 [Cucumis sativus] | [more] |
XP_023552955.1 | 3.80e-64 | 39.57 | probable F-box protein At1g44080 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
AT2G17690.1 | 8.5e-05 | 32.53 | F-box family protein with a domain of unknown function (DUF295) | [more] |