Chy6G119390 (gene) Cucumber (hystrix) v1

Overview
NameChy6G119390
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionTranscription elongation factor SPT4 homolog
LocationchrH06: 14902713 .. 14911287 (+)
RNA-Seq ExpressionChy6G119390
SyntenyChy6G119390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGGTGAGCTGCAGTCTCCTTTTTTCAAGAATCTTTGGTTGTTCTTATAAATGCTTGCATTCAATATCTAACAGTTTAAGATCTTTGAACTTCTCGAATTGTATGTTATATTGAGTATTGGTCATGCATACAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGTTTGTATAATTTTCTATTCCTTTATTCTCTTTTTGTTTTACTGTTTGTCATCTTCTCTGGAATTAACGCTCCTATCCAACGCGGATAATGTTAGCTTAAGCTTTTAGTGATTTAACATGATATTAGAGCGGGTGGTTTAGGATAACTTGCTTTCGAACTCCTGCAATGTTATTTACTCTTCAATTAATATTCATTTTAACTTGGGAGATGATACAGTACTAAATTTACTTTCATCCATCAATATAAGGTATTGGGTCAATCAATGATTTAATACATAGAAGGTTGGGCATGACATATAATTTCAATTGTTTCAATGGAAATCTACCAAATTTCTATATGAAACCTTAAAAGATTCAATCAATATTAAAAGAAGTAATATTCAGCTTATGATCATGCTGTATTTCAATTACATTTGTTCTGCCCTTTTGCATATCTTGCAGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGTAAAGCTAATTATTACCATATGAGGCCCTTTCTTCTTTCTTACCCCCCTCCCATTAGTTTTTGCAACTAAAGATGTTTTTGTGTAAGAATTGACTAACCTGAGTACTTGTTATTCTAGTAGCAGATAACGTCTTCCTGTCTGACTTCTTAACTTCTGTTGGCCAAGTTTCAACTTTCAAGAACGTCCGTACATAGAACAAAAGAAAGGATGTCATTTTCATTCTTCAATATATAAATTTGTCCATATTCCGAGCCTAATATTAGACCATGAACAGTTGTTCGTTTTAAGCTCGGACCTGTGCACTTTCTGATATCCTTTGAATTATAATTGTAAGAAACTGCTTTGTGGCTGCTGAACGCCTAAAACTGACCAATATCCCAAATTTTTCAGTGAATAATGTATTGCATGGGTTAGTGTTTAGTTCACTTATTTGTATGCTTGATGAAATGGTTGGCAACTTGGAGCAATGACCTTTATTTTTATTATAAGATCATTGTTGATAGAATTCTTGAGTAACCTGGAATTTATGAAACCAGCATTTCTGCTTCTTTTTTTCCTCTTCTTTGAATTTTGTTGTCTTATCTACCTTTCTTTTCACCTAATTTTAATAATTCATTAAATTTCTTGCTTGTAACCTTTTAGCTTTGTTTATAATTTGTTAGCTCTATAGTAGCATTTGGCATTTGATTTTCAGAATTTATATTTCCTTCCAATCTTGTAGGAAGATTCGTTCCAGGTTGTTACACTCTTGCGGTCTCAGAGGCTCTCCCCGAGGATTTGCAGGTTTGCAACCAATCATTTCCTAGCATAAATTTCATCATGACATGTTTACATGTTTCATTCTTCTGTGTTCATCTTGTACCAAAGCCATCAGGAATATCAATGCCCATTGGTCGATTGTTTCTGGTCAAGGATTTTTCGTTGATTTACTATTCTTATTTAATTCTCTCTCTCTCTCTCTTTGTTTTCTGTTTTTGTTTTTTATTCTTTGTGTTGTTTTAAACTATCAATAAATTCAGCGGCTTCTCTTCCCTAACTTCAAAAACTAAACATCAGGTTTGGGAAATTGGCACATGTGGAGTTGGAGGACATCTGGTCCCTTGGGTTGGGAATAACCCTTAGTCTTTCCATTTAAAACAGTACAGTTGGCTTGGCTTGGATTATTTTTAAAAATTGGAGAGGATTCACTTACCCTTGTATATACTTCCATTTCTCTTGGTGATAGACAGTTTCTCACAAAGAAAAACATAAACAAAGATTTTTCACTTCTGCTGGTCCATGGGAAAGTTGGACTACTGTAGAAGGACCCAACCTCCTAGATTTCAATTTTCATGGTCATATAATTTGAGGCATGAATTGTTGAGCAACATCCATTGACCCAAACACAGTTTTTCTTCAAATGTATTTGTTTTGCCGTGCCTTGGTTCTCTTCTCCTTATAAATTCAAGCATTCTCATATGCCTCATTTCATAAGTTATTGATCTTTTTCAACTGTTACATTCCCTTCTCGTCGACTAGTTACAAACTCATTGCATTCTCATATGCCTTACCTTCCAACTCTACTAGAAGGTGGCATGTTTTGCCAAAAACTACGTGTAAAGAGAGATCCCATGTGGACTTCTCAATGCAGTCCTACATGCCTACAATGCACCATTTAATTTCTTTGTCCAATCTTTGAGTGAATGGTCCATTGTCTTCTTGAAGTATACCTTCACCTTCTGTTGCAAAATTCTATTTGTCCATTTGGTTGAGAGTGAAAGGCTAGGGTTATCCTATGTCTTACCCTACATTTAGCCAAGAGTGTGCAAAGATTACCTTGCTTTCATTTGTAGGAGTATTGCCTTTACCCATGACCCATGTTGACACGTGATCAATAGCAAAATGTATTTATTGTTGCTTGAGGATGGGAAGGCCCTATGAAATTCATTCCAAACCCATTAAATAATTTCACTTCAGAATGTCCTGCAAGAACATTTCATCTTTTCTCGAGATATTTCTTGTTGATATTTTTCATGTCCTGTGAAAAGAATAAACTTCAAACACTGAGAATTTATTCTTAGATAACTCTGCATTTTTTGACCATCTCGTAAAAGATCACTATTGTGTACCTTTGTGAATGTGATGGATGCATAGTGTAGGGCATTCTTCTAAATGCAAAAGTACTATATTGGATGTGGACAGTCTCCTCTGGAGCTAATTCTAATTGATGATATTGATAGGACTGCGATTAGATTATTATAAAGGCATATTGGTAATTAGTTTGGGAAGTTTGTTATGGAATTTTGTTGTAATTAACGGCTAGGGAATGAGAAAGGTAGGCAATATTGTGGTGAGTGAAATAGGGCTTGAGAGTAATTTCAAGAGGGAATGGTCGGCGTACCTTGATTACAAATGTGACTTACATGCGATTTATCTTATAAAGACTTCTCTAATTTGATTGATTTAAAGAGGATAAAAAGGTTAATGGAAGATGAAGCTTTTATTGTGTCAAATGATGGTAAGTTGAATGAAGTAGAGGATTGTCCAAAAGTTCCCTTAGAGCATCATCTGCTCCGTACTTTGAATGACTATGGTCATGATATGGGTACTTCTTTTCCTCCCATAGATGATTTTTCTCCACAAGAAGAGCCTCCAGATGACATTAAGCATTCATCATCTCTTCAACCTGCCCTGAATTCAAACAGTGTGAAGCCGAGGTTCATGAAAGCTTTCCCTATGCATTATTCTCAAAAGAAAGAAGTTCTCAGTCTTCTTGATTGCAAAGAAAGAAATTCCGATGCTTTAGGAAAATCTTGTATTTATCTTTTGGTTTCTTCATTTGTTGGCTTCACAACAACACCAATTTTTGGATCCTGACAAGTTCTTTAAGCAATCTTTTCTCTCTCCCTGGATAAGATGTTTATTAAAGGGGTATCCAATCCCCTTTCTCCTAAAGAAATTTTATCTTCTTTTGATGGAGAAATAGTGCAACAGGATTTACTATCGAAGGATATACTTGCAGAAAGCTGCAATCATATTTTTGCAAATGAAGACATTGGATCGCTTAGTTCAAAGCCTTTTTGCTGGAGCATCATCAATGTTCTCTCCTTATATTCCTGACAATTTAATTTTTTTAGTAAGGTTTGTGGTCTTCAACTGCAAATATTCCTTCTAGATCTCCAGGAGTTATAGTTTAATAGTGTTTACCTTGAGTCTCTTACGGCCCTTTTTGCCTTGAGGTCTCGTTTCCATCTCTTAAGGACTTCTTCTAGAATTTTTGGTCTTTTGCTGTGCAATCTTGTCAGTTTTTTGGTTTGAAGTGTTGGAATCCTTTTTTTACTTTCTAAATATTTTCCTTGTTAGAATCTTAGAATGTTTATGGAAAGATTATGGGAATATTTTCCTTATTTCCTATATCTTTTCCTTTTTTATTCTCTTGTATTCTCTATTTATTCTCCCCTGTACCTATTGTATTATTCATTAGAAAATAATAACAACAAACAATCGTGGTTTTTCTCCCGGTACTCGGGTTTCTACGTAAATTGGTGTGTGCTCGTTGTCTCTCCTTTCAATATGAAGTTTCTCTTTGTTTGGCCTGGTATGTTTTGGTTCAATTTGTCTCTTAAGAGTCTTATGGTGGCTCTCTCTTTAAGTCTTTTTTGTGCTTCTTAGTTGAAGGTTCTTCGTCTTATTTGACTTGTATTCTTCATCAGTTTGTTTGCCTCTCTTATTTATGTCCTCTGGTTGGGTGTCGTGTATTTTGGAGCATTAGTGTCTTTCCATTTTATTAATAAAATCTTGTTTCCTTTTCAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAAGAAAAGTGATATCTTGAGTAACATCCAGAAGAAAAATGATAGTGTTTATGGTGTGCCAATCAGTCTGTAACGTTTGGTCAATAGAGGGCAAGGGTTTCCTTCTCTAACTACTTGTAATTTTTGCAGCTTCTCCAATTAATAGTCTTCGAAATCTAACTATTAGTGCCTGAAGATGAAATTTTTTGTGTGTCGTATCGAGCACCTTAAATGTTTCCTTTTGCCTTCATTTTACCATTGCTGTCTGAGCACTTCAACATAACTTTGTAAAGTTGTAATTCTTATATATTCTATGCTATTGTTTTTTGCAGAATTTATGTGAAGAGGAGCGTGTGCAATATGCACCACCAAAACGTGTTTAACCTTATGTTAATCTCTAGTTTATTCTGATTACAAAGAATTCCATCTTGTTCATGTACTAGTATTCCTAATTGAACTAGCATTTAGTGTGTGTTGTTCGTTGATTGAAATGAACAGAAGGTATAGTTGCTAACACCTTACATTCTACATTTTTATTTGCTTCCCCTTGTATATCTTTTTTGCCTATCATTAAATACATACTAACGGTTTGAAGAATTTGAACTTGAGTTGCTTAGAACACAGGGTTAACCAAAAACTGTTAGTTTTATTGCTCTCGGTTGGTTCAGGAGAAAAAATGTTGGCATACGAAAAAGAGTTCGATTGAATTATTGATGGCTATCGTGAAGAAAAGTCGATACATTTGCTCAGATTAAGTTGAGTTACTGATAAGGAAAAAAAAACATCTTATTACTGGAGCACAACGTTATCCCATACTTTTGCTATTCCTATACATGATATGGGGAAGATATTGTGGTAGGCTTATTGTACATTGTGGGGAGTGTAGAATGATAGAATCAGTAGAACTTTTGGAGGGAGAGGGAGCAGTCTTTGAATGAGGTTTAAGATGGGTGGGGTTTAGTGCCTCATGGTGTTTGTTTTTGTTGGATTTGCTTAGAAGAGATCGTTCTTATAGGTAGTTGAAGGATTCTTTTTGGACTTTTTGCTCATGTATATTCTTTCTTTTTTTTTTCTTGCTAAAGTTTCGGTTACCAGGTGCTACTATAATGTGCCTTCTTTGTGTAGTTTCATTGCTATTTATAAGGAGGCTATAGTAGGATAGTCAAGTTTCGATGAGCAACAATCATTTGTTGGTAAATGGTTAATGAATTTTTCGTAGTGAAAAATGCTTGGAGCTCCAATCCTACAAACTAGACATTGGTTCTTATCGCTCTTCTAGTGCGCTACATAATATTTTTAGTACCAACTTATTCGTATGCATTGCCACTCTCTGCCTTCAAGTAGATGTTTGTTTAATGAAAATTGAAAAGGCTTGATATGTGAGGTTAAATGACGATGCATATGGACGTTTCTAGAAAATATATATATATAAAAAACAAAAACATATACTATGCCCTTTGCGATTTTTGTAAGTGTCTAAATTTTTTTAAAAACTTTTCTAGGTTTTTAAATTTTATTTTGCCCATTTTATTACCATTTTGCCTATTATAGTGTTAATTCTATTATTATTATTATTATTTGAAGTGGAGCACACCGTAGTTGAACCAGTAAAAGGTAAGAGATTTTTCTAAGGCACAAGGATGACACAAACGATCATTCTTATTCAAAGTACATGAAAGATTACACGAATTGAATACATTTTGAGTAGTAGAAAGAGCAAGGTGGTCTAATCTATTATGCTACAAATGGAAAGAAGTACCAAGACTTGGAAGAAGGTTTAAAGCATGAAGGAAGTATGAATGGTTATAAAAGTAATACTACGATAAAGCAAAAAAACACATACATTAAAGATCTATGTCGAACAAATTCACATTGTCTCTTTAAGTCAAATTTACTCACTCTAGTATCTAAGTTTTGAGAGTATTGTTTCCATAATATAATAGACCACATTTCTTCTAGAAGTAGCACCACCAAAAGATCAACGAATGAAACTTTATGAATATAGAACTTCAACATTTTTTAAAATGGAGAGTTTTCTTAAGAAGGAAAAATATCACGAAAAAAGTATGTAGAGAACAATCGAAGAAATGGCTTATTTAATGACTAATTTGTAGCCATTTGAATAATGAGTCTTTTCTTCAGTGTAGTTATTCATGAAATGATTCAACCATTTATGAGAGAACACAATGTACCATTTAGATAAGTAGTAAAAACTTTTAACTTTCTAGTGAGCATCAATCAAGTTTATTTGGTTAATTAGTGGACTTGATGCCTTGAAACGTCAACTCTTCTAGAGTAAACTAAGACACTAGATATTACACAATTTCTCATTATAACAAAGTTTGTTCTCATAAGTGTTCGTTTTGGCTTTGAATACCATCTGGTCATGGTCTCATGAGTGTTTTAGAGAATTCACCTTAAAATTCTCATAGAAGAGACCCATCCACACTCATATAGGTGATATCTATAAAGAACACTTATATATGCTCTTTTTATTGATAATTATCCAACCACTTATAGAAATCATTAAAAGCATAGTGCTTGACCTAAACCCATACTAGCACTGTCCATCATCCTCATAATGGATAAAAGGTCAAATTTCAACGCAACGCTCATTATGTTGTCCATAGACCGAATTTTCTAATAAACCTAAAATTTAGGATCTCTAGTCAACTAGGATGTGTTGTCTCTATGATTAACTTTATATTATAATTTTTAATCCTATTTTTTATGAACTTTAACCAAATATCTAGTTAGGCCTTTAGTAAGTTGATTTGCAGTATTATCTTTTGACCTCACAAAGTCAATTGTTATAATTCCACTAGAGAGTAGTTGTCTAATTGTATTGTGTCTCTGTCGTATATGTCGAGACTTACCATTATACATAACATTTTGTGTCCTTCCAATAGTTGCTTGGCACTGGCTTAGACTAGTTGGAAATATCTTCCAAAAAAGTTTGAAGTCATTCTACTTCTTCCCCAAACTTATCGAAAGCTATAAATTCAAATTCCATTGTGGATTGTGTTATGCATGTTTGTTTGGAAAATTTTCAAGACATAGCCCCACCCCAAAAATGAAAATGTAACCACTTGTGGATTTGAAGTCTTTAGTACTCGATACCCAATTAGCTTCATTATAACCTTCAAGTACAACAAGATATCGAGTACAATGTAAGGCATAAATTTTAGTGTACTTTAAGTATCCCAGAATTCTCAAAATAACTTTCCAATTATCTTGACCTGAATTGCTTGTAAAACGACTTAGCTATGCTAACATCATATGTTATTTCTAAACGTGTACAACTCATGATGTATATTGAACTACCAATTATGCTAGATCATTATAATTGTACTATACTATGAGACATGGATCATGTCCTAAGCCACGCAATAAGATGGTAGGCAATAAAGAGTTGTCAACTGGAGGTGTTTCTCGCGATTTGACACGTTGATGCGTTTCAATCAAGCGTTGAGGAAGTTTCTATGCGTTCTGGTAAGTTGGCAGCTAGAGATTTCTTAACAAAGAAATACTTGATGTCATCCTTACATTTGAAGGGTAGTGCTCGGTAAATCGACGTTCTGATACAACTGTCCATTGATGATCAGAATTTGGACAGTAAAAGCTACGTGACAAAACGCGATTTGTTGAAACTCACTTCCGGGCAGAGGTAATCATTTCGACATGAAATTCTCATCAGAGAAGTATACAAATAAGGGAGTTCTAGACAAGTTTTAGAGCTTAACAAAAAACTTTGAGCTAAGTAAGGGTGGGAGATTTTACGAAGCATTGAGAAGGCTTTTCAAAGCTACCATGTGTTTGAGGTTGACAAGGAGTTTGGCCAAGTGCTTGGGCCAAAAGGAAATCTTATTTTAACTGTGAGTGGTTTTAAAATGTTTAAAATATCCAAATGATTTTCGACTCATATTTGAACTATTGAGTATTGATGTTTATTTAGTATTGCCATTAA

mRNA sequence

ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGATTCGTTCCAGGTTGTTACACTCTTGCGGTCTCAGAGGCTCTCCCCGAGGATTTGCAGAATTTATGTGAAGAGGAGCGTGTGCAATATGCACCACCAAAACTTTCGGTTACCAGGTGCTACTATAATGTGCCTTCTTTGTGTAGTTTCATTGCTATTTATAAGGAGGCTATATATTGCCATTAA

Coding sequence (CDS)

ATGGCAAGCGCACCTGCTCAAATTCCTACCAGCTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGAGAATTGCCCCTTCTTCAAGATGGACGAAGACCATGAGCGTGTTGTAGAATGCACAACCCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCCAGAAGTTGGGCTGCTAGATGGCTGCGAATTGGAAGATTCGTTCCAGGTTGTTACACTCTTGCGGTCTCAGAGGCTCTCCCCGAGGATTTGCAGAATTTATGTGAAGAGGAGCGTGTGCAATATGCACCACCAAAACTTTCGGTTACCAGGTGCTACTATAATGTGCCTTCTTTGTGTAGTTTCATTGCTATTTATAAGGAGGCTATATATTGCCATTAA

Protein sequence

MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPKLSVTRCYYNVPSLCSFIAIYKEAIYCH*
Homology
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BLAST of Chy6G119390 vs. ExPASy Swiss-Prot
Match: Q94C60 (Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g63670 PE=1 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-57
Identity = 98/114 (85.96%), Postives = 108/114 (94.74%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 115
           GIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC+EERVQY  PK
Sbjct: 61  GIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPK 114

[Close]
BLAST of Chy6G119390 vs. ExPASy Swiss-Prot
Match: Q8LCQ3 (Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At5g08565 PE=3 SV=3)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 93/114 (81.58%), Postives = 106/114 (92.98%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 115
           GIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C++ RVQY PPK
Sbjct: 61  GIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPK 114

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BLAST of Chy6G119390 vs. ExPASy Swiss-Prot
Match: Q6DGQ0 (Transcription elongation factor SPT4 OS=Danio rerio OX=7955 GN=supt4h1 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-19
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 0 

Query: 8  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVM 67
          +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V ECT+ +F+G+I++M
Sbjct: 6  VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCESYLQMKGNREMVYECTSSSFDGVIAMM 65

Query: 68 DPARSWAARWLRIGRFVPGCYTLAVSEALP 97
           P  SW A+W RIG F PG Y + V+  LP
Sbjct: 66 SPEDSWVAKWQRIGNFKPGVYAVTVTGRLP 94

[Close]
BLAST of Chy6G119390 vs. ExPASy Swiss-Prot
Match: Q5RFH5 (Transcription elongation factor SPT4 OS=Pongo abelii OX=9601 GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-19
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 0 

Query: 8   IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVM 67
           +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M
Sbjct: 6   VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMM 65

Query: 68  DPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQY 111
            P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct: 66  SPGDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108

[Close]
BLAST of Chy6G119390 vs. ExPASy Swiss-Prot
Match: P63271 (Transcription elongation factor SPT4-A OS=Mus musculus OX=10090 GN=Supt4h1a PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-19
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 0 

Query: 8   IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVM 67
           +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M
Sbjct: 6   VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMM 65

Query: 68  DPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQY 111
            P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct: 66  SPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108

[Close]
BLAST of Chy6G119390 vs. ExPASy TrEMBL
Match: A0A1S3CFH1 (Transcription elongation factor SPT4 homolog OS=Cucumis melo OX=3656 GN=LOC103500131 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.0e-62
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 115
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 114

[Close]
BLAST of Chy6G119390 vs. ExPASy TrEMBL
Match: A0A0A0L9Q3 (Transcription elongation factor SPT4 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G258160 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.0e-62
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 115
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 114

[Close]
BLAST of Chy6G119390 vs. ExPASy TrEMBL
Match: A0A6J1CNB4 (Transcription elongation factor SPT4 homolog OS=Momordica charantia OX=3673 GN=LOC111013173 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.0e-62
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 115
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 114

[Close]
BLAST of Chy6G119390 vs. ExPASy TrEMBL
Match: A0A6J1K6X8 (Transcription elongation factor SPT4 homolog OS=Cucurbita maxima OX=3661 GN=LOC111492846 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.1e-62
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 115
           GIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQN+CEEERVQYAPPK
Sbjct: 61  GIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQNICEEERVQYAPPK 114

[Close]
BLAST of Chy6G119390 vs. ExPASy TrEMBL
Match: A0A6J1G8V8 (Transcription elongation factor SPT4 homolog OS=Cucurbita moschata OX=3662 GN=LOC111451985 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.1e-62
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 115
           GIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQN+CEEERVQYAPPK
Sbjct: 61  GIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQNICEEERVQYAPPK 114

[Close]
BLAST of Chy6G119390 vs. NCBI nr
Match: XP_008461561.1 (PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_008461562.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_008461563.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_011651356.1 transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >XP_011651357.1 transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >XP_011651358.1 transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >XP_031739203.1 transcription elongation factor SPT4 homolog 2 [Cucumis sativus] >KGN57714.1 hypothetical protein Csa_010059 [Cucumis sativus])

HSP 1 Score: 245 bits (626), Expect = 1.35e-81
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 114
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 114

[Close]
BLAST of Chy6G119390 vs. NCBI nr
Match: XP_038881174.1 (transcription elongation factor SPT4 homolog 2 [Benincasa hispida] >XP_038881183.1 transcription elongation factor SPT4 homolog 2 [Benincasa hispida] >XP_038881192.1 transcription elongation factor SPT4 homolog 2 [Benincasa hispida])

HSP 1 Score: 244 bits (622), Expect = 5.49e-81
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 114
           GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK
Sbjct: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 114

[Close]
BLAST of Chy6G119390 vs. NCBI nr
Match: XP_022143259.1 (transcription elongation factor SPT4 homolog 2 [Momordica charantia] >XP_022143260.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia] >XP_022143261.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia])

HSP 1 Score: 244 bits (622), Expect = 5.49e-81
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 114
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 114

[Close]
BLAST of Chy6G119390 vs. NCBI nr
Match: XP_022948256.1 (transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_022948257.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_022948258.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_022998096.1 transcription elongation factor SPT4 homolog 2 [Cucurbita maxima] >XP_022998097.1 transcription elongation factor SPT4 homolog 2 [Cucurbita maxima] >XP_022998098.1 transcription elongation factor SPT4 homolog 2 [Cucurbita maxima] >XP_023523239.1 transcription elongation factor SPT4 homolog 2 [Cucurbita pepo subsp. pepo] >XP_023523240.1 transcription elongation factor SPT4 homolog 2 [Cucurbita pepo subsp. pepo] >KAG6607059.1 Transcription elongation factor SPT4-like 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036760.1 Transcription elongation factor SPT4-like 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243 bits (620), Expect = 1.11e-80
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN
Sbjct: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 114
           GIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQN+CEEERVQYAPPK
Sbjct: 61  GIISVMDPARSWAARWLRIGRFAPGCYTLAVSEALPEDLQNICEEERVQYAPPK 114

[Close]
BLAST of Chy6G119390 vs. NCBI nr
Match: XP_006448501.1 (transcription elongation factor SPT4 homolog 2 [Citrus clementina] >XP_006468680.1 transcription elongation factor SPT4 homolog 2 [Citrus sinensis] >GAY47497.1 hypothetical protein CUMW_104910 [Citrus unshiu] >ESR61741.1 hypothetical protein CICLE_v10017231mg [Citrus clementina] >ESR61742.1 hypothetical protein CICLE_v10017231mg [Citrus clementina] >KDO77046.1 hypothetical protein CISIN_1g046522mg [Citrus sinensis] >GAY47498.1 hypothetical protein CUMW_104910 [Citrus unshiu])

HSP 1 Score: 238 bits (608), Expect = 7.25e-79
Identity = 109/114 (95.61%), Postives = 111/114 (97.37%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVV+CTTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 114
           GIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCE+ERVQY PPK
Sbjct: 61  GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPK 114

[Close]
BLAST of Chy6G119390 vs. TAIR 10
Match: AT5G63670.1 (SPT4 homolog 2 )

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-58
Identity = 98/114 (85.96%), Postives = 108/114 (94.74%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1   MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 115
           GIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC+EERVQY  PK
Sbjct: 61  GIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPK 114

[Close]
BLAST of Chy6G119390 vs. TAIR 10
Match: AT5G08565.1 (Transcription initiation Spt4-like protein )

HSP 1 Score: 216.9 bits (551), Expect = 1.1e-56
Identity = 93/114 (81.58%), Postives = 106/114 (92.98%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 115
           GIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C++ RVQY PPK
Sbjct: 61  GIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPK 114

[Close]
BLAST of Chy6G119390 vs. TAIR 10
Match: AT5G08565.2 (Transcription initiation Spt4-like protein )

HSP 1 Score: 178.7 bits (452), Expect = 3.3e-45
Identity = 79/114 (69.30%), Postives = 92/114 (80.70%), Query Frame = 0 

Query: 1   MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
           M  APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFN
Sbjct: 1   MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60

Query: 61  GIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEEERVQYAPPK 115
           G +S            L  G+F PGCYTLAVSEALPE++Q +C++ RVQY PPK
Sbjct: 61  GFVSDRREINLTHCNILFPGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPK 114

[Close]
BLAST of Chy6G119390 vs. TAIR 10
Match: AT5G63670.2 (SPT4 homolog 2 )

HSP 1 Score: 164.1 bits (414), Expect = 8.3e-41
Identity = 72/79 (91.14%), Postives = 77/79 (97.47%), Query Frame = 0 

Query: 1  MASAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFN 60
          M SAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFN
Sbjct: 1  MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60

Query: 61 GIISVMDPARSWAARWLRI 80
          GIISVMDP+RSWAARWLRI
Sbjct: 61 GIISVMDPSRSWAARWLRI 79

The following BLAST results are available for this feature:
BLAST of Chy6G119390 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94C602.1e-5785.96Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana OX=3702 G... [more]
Q8LCQ31.5e-5581.58Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana OX=3702 G... [more]
Q6DGQ01.0e-1948.89Transcription elongation factor SPT4 OS=Danio rerio OX=7955 GN=supt4h1 PE=3 SV=1[more]
Q5RFH52.3e-1941.35Transcription elongation factor SPT4 OS=Pongo abelii OX=9601 GN=SUPT4H1 PE=3 SV=... [more]
P632713.0e-1941.35Transcription elongation factor SPT4-A OS=Mus musculus OX=10090 GN=Supt4h1a PE=2... [more]
BLAST of Chy6G119390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CFH11.0e-62100.00Transcription elongation factor SPT4 homolog OS=Cucumis melo OX=3656 GN=LOC10350... [more]
A0A0A0L9Q31.0e-62100.00Transcription elongation factor SPT4 homolog OS=Cucumis sativus OX=3659 GN=Csa_3... [more]
A0A6J1CNB43.0e-6299.12Transcription elongation factor SPT4 homolog OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1K6X85.1e-6298.25Transcription elongation factor SPT4 homolog OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1G8V85.1e-6298.25Transcription elongation factor SPT4 homolog OS=Cucurbita moschata OX=3662 GN=LO... [more]
BLAST of Chy6G119390 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008461561.11.35e-81100.00PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo] >XP_008... [more]
XP_038881174.15.49e-8199.12transcription elongation factor SPT4 homolog 2 [Benincasa hispida] >XP_038881183... [more]
XP_022143259.15.49e-8199.12transcription elongation factor SPT4 homolog 2 [Momordica charantia] >XP_0221432... [more]
XP_022948256.11.11e-8098.25transcription elongation factor SPT4 homolog 2 [Cucurbita moschata] >XP_02294825... [more]
XP_006448501.17.25e-7995.61transcription elongation factor SPT4 homolog 2 [Citrus clementina] >XP_006468680... [more]
BLAST of Chy6G119390 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G63670.11.5e-5885.96SPT4 homolog 2 [more]
AT5G08565.11.1e-5681.58Transcription initiation Spt4-like protein [more]
AT5G08565.23.3e-4569.30Transcription initiation Spt4-like protein [more]
AT5G63670.28.3e-4191.14SPT4 homolog 2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022800Spt4/RpoE2 zinc fingerSMARTSM01389Spt4_2coord: 16..92
e-value: 2.9E-42
score: 156.4
IPR022800Spt4/RpoE2 zinc fingerPFAMPF06093Spt4coord: 16..92
e-value: 1.7E-32
score: 111.3
IPR022800Spt4/RpoE2 zinc fingerCDDcd07973Spt4coord: 14..110
e-value: 1.1043E-48
score: 149.696
IPR038510Spt4 superfamilyGENE3D3.30.40.210coord: 1..106
e-value: 2.7E-40
score: 138.6
IPR009287Transcription initiation Spt4PANTHERPTHR12882SUPPRESSOR OF TY 4coord: 1..114
NoneNo IPR availablePANTHERPTHR12882:SF4TRANSCRIPTION ELONGATION FACTOR SPT4 HOMOLOG 2coord: 1..114
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILY63393RNA polymerase subunitscoord: 11..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy6G119390.1Chy6G119390.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006325 chromatin organization
biological_process GO:0006397 mRNA processing
biological_process GO:0032786 positive regulation of DNA-templated transcription, elongation
biological_process GO:0034243 regulation of transcription elongation from RNA polymerase II promoter
biological_process GO:0006414 translational elongation
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0032044 DSIF complex
cellular_component GO:0005634 nucleus
molecular_function GO:0000993 RNA polymerase II complex binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0008270 zinc ion binding