Chy6G118640 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G118640
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Reticulon-like protein
Location	chrH06: 12752027 .. 12754459 (+)
RNA-Seq Expression	Chy6G118640
Synteny	Chy6G118640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACCAACAAGCCGAGCCGGATTCCGTCATTGACAACTTCTCCGCCAAGATCGACTACCACATTTCATCCTCTTCCTCCGACTCTGATGACGACCACCCTTCCAAACCCGATGCTGTAAAATGCCACGTTTATAGACTCTTCGGCAGAGACAAGCCCGTCCACACGGTCTTAGGCGGTGGAAAACGTACTCTCTAATCCCTCTCTCTCTCTCTCTCTCAGATTTGGATTATGCTTTGTCATTCTTACTTATCAAATGTCTTTCTATCTTTGTACATTGTTATTGTGGATACGTGTTTTCGAAAGTTCTTGCAATTTTCGTTTCATTACTTCCCGATGTTTTCCTTCTTTTTGGGAAGGAAAGAATTTCATTGATTGAATGAAATGTCACAAAAGGGAGACAAACCGGATTACAAAAAAATTAATTTCTCCGTTTGGATAAAATAAAATTTGAGTTGTAAATGCTGAAAGATGAAACGGTTTTAAATGAGAGATCGGACGACTGTTCATATGTTACAACATAGAGTATATTCTCTTTTAATTTCCATTGAGTTATGCATGAAAACCTTAGTTAGCGTTATGGCTTCATACATTGTGGTTTCAGTTATGTTAAATATGTTATCTCAAAACCAATTTTCATCTGGCAACGAAAAGAGTTACTATATATTTTGAGGTCTCTTCATTATACTGATTGTGGGATCCTCAACATGTTTACCATTTTTGGGTTGAATTTAGCCATAACCCTAAAAGCTTCATAGACTCCAACATCATAAGATTAACCATTGTAACTTACGTTAGAAAATTACTCAGTTACTGCATTTGGCAAAGTTGAGTTTTGCTGCCTTATTTATGAATAATAGGGTAACCGCTATTTTGTTTTACTTTCTGCCGCAGATTTTAGGCATTTAAAACGATATTTTATTCTGTCTACATTTTAGTTCGTATTTAGTAGGAATATTGTAGTTCATGAGATAAACGGCTGAAAGGTATAGGTCCAGTTCTTTTCTAGTCTGTTTACCAAACAACTACTCTAATAATACTACCTCGTCATTATTAGAAAGATTATTTTAAATGACAAAACTGTGGAAAATAGTTACAAATATAGTAAAATATCATAGTCTATCTACGCAGACCACAATAGACAGATATAGCAGTCTATCACAATGATGTAGTAGGATAGGGTGTTATGCTAATCCCAATCCTAATCTTAATTAAATTAAGGATTTGACCACAATACCCTAATCCTATTACATCAAATATTTAATGTATACCATTTTCAATGTAGAATATAATAACTGCATTAAACATGAATTGAGAACTGATTAGATATACCTTTCTTTTCTCCACATACAAATTTCTGTAGAACGTGATACTGGAGTTATGCCCTTCTGTAGCTCTACCCCTCACCACTTTCCTGTCTTTATCTTTGAGGAACTTTTCTTGTTCTTATAAATTATAATTACTTCCGGTTGCAGCTGCTGATGTTTTTTTTTCTTTGGAAGAACAAAAAGAACTCTGCAGGCGTCCTTGGGGTGCCACTGCCTTATGGATTCTTTTTTAACTGCTTGAATACCAATTAATCACTCTCGTGTGCCGTATATTAATTATTTTATTGGCTATAGCTTTCTTGTGGTCTTATGCCAATACATTTATCAACAAGTAAGGACATCGACTTAGATAATCTGATGCAATAAACAATCTGTTGATTTTGTTTTATATATATGTTTTCTATGTTGTTTCATGTTTGTATAGGACCCCACCTCAAATCCCAGATGTTAGACTTCCTGAAGATTGCCTGCTACAGGTTGTCACTTCACTGTGAATCGAAATCAACCGTATAATCTTCACTTTACGCGATGTCGCTTTTGGTAGAGATTTGAGGAAATTTCTGAGTGTACGTTCCCTGCTATTATCTACTTATGAGTAAATGTGTTTTAGAGCGAGCAGAAAAAAAGTAAATATTTCTAGACTCGATCAACTATTAGAAATGACAATTTTAGTAGTTTCTTAAACATTATCTTTTCATCATTTTGTTTATTGATTACTTTGGTAATGCTACTGAGATTGTCTGATACCATCAACAGGCTTTTTTTGGCTTATGGGTTCTATCAATAGCTGGCAGCTGGTGCAATTTTCTGACCTTGTTATACATATGTAAGAACTGATCTTTAAGTTTTTTATGAGAAATCACCGAGCCTTTTGTATTTATAACTGAAAATATGTGCTTACATATTGATATTTTGATGTGCTTGAAAATCAGGCTTTATATTGCTACACACTGTGCCAGTCCTTTATGAGACGTATGAAGACCAGGTTGACCCATTTGCTGAGAAGGCTTTGATAGAACTCAAGAAGCAGTATGCTGTATTTGATGCCAAGGTTGTGAGCAAAATCCCATTGGGGCCACTTCAAGAGAAGAAGAAGGATTAG

mRNA sequence

ATGGCTGACCAACAAGCCGAGCCGGATTCCGTCATTGACAACTTCTCCGCCAAGATCGACTACCACATTTCATCCTCTTCCTCCGACTCTGATGACGACCACCCTTCCAAACCCGATGCTGTAAAATGCCACGTTTATAGACTCTTCGGCAGAGACAAGCCCGTCCACACGGTCTTAGGCGCTTTCTTGTGGTCTTATGCCAATACATTTATCAACAAGACCCCACCTCAAATCCCAGATGTTAGACTTCCTGAAGATTGCCTGCTACAGGCTTTTTTTGGCTTATGGGTTCTATCAATAGCTGGCAGCTGGTGCAATTTTCTGACCTTGTTATACATATGCTTTATATTGCTACACACTGTGCCAGTCCTTTATGAGACGTATGAAGACCAGGTTGACCCATTTGCTGAGAAGGCTTTGATAGAACTCAAGAAGCAGTATGCTGTATTTGATGCCAAGGTTGTGAGCAAAATCCCATTGGGGCCACTTCAAGAGAAGAAGAAGGATTAG

Coding sequence (CDS)

ATGGCTGACCAACAAGCCGAGCCGGATTCCGTCATTGACAACTTCTCCGCCAAGATCGACTACCACATTTCATCCTCTTCCTCCGACTCTGATGACGACCACCCTTCCAAACCCGATGCTGTAAAATGCCACGTTTATAGACTCTTCGGCAGAGACAAGCCCGTCCACACGGTCTTAGGCGCTTTCTTGTGGTCTTATGCCAATACATTTATCAACAAGACCCCACCTCAAATCCCAGATGTTAGACTTCCTGAAGATTGCCTGCTACAGGCTTTTTTTGGCTTATGGGTTCTATCAATAGCTGGCAGCTGGTGCAATTTTCTGACCTTGTTATACATATGCTTTATATTGCTACACACTGTGCCAGTCCTTTATGAGACGTATGAAGACCAGGTTGACCCATTTGCTGAGAAGGCTTTGATAGAACTCAAGAAGCAGTATGCTGTATTTGATGCCAAGGTTGTGAGCAAAATCCCATTGGGGCCACTTCAAGAGAAGAAGAAGGATTAG

Protein sequence

MADQQAEPDSVIDNFSAKIDYHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLGAFLWSYANTFINKTPPQIPDVRLPEDCLLQAFFGLWVLSIAGSWCNFLTLLYICFILLHTVPVLYETYEDQVDPFAEKALIELKKQYAVFDAKVVSKIPLGPLQEKKKD*

Homology

[Close]

BLAST of Chy6G118640 vs. ExPASy Swiss-Prot
Match: O82352 (Reticulon-like protein B5 OS=Arabidopsis thaliana OX=3702 GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.7e-41
Identity = 97/241 (40.25%), Postives = 128/241 (53.11%), Query Frame = 0


Query: 9   DSVIDNFSAKIDYHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLGA------- 68
           +S+++  S KI +H SSSSS+S+ + P  P AVK  +YR+FGR+KPVH VLG        
Sbjct: 13  ESLMEKISEKIHHHDSSSSSESEYEKPDSPSAVKAKIYRMFGREKPVHKVLGGGKPADVF 72

Query: 69  --------------------------------------------FLWSYANTFINKTPPQ 128
                                                       FLWS A+T INKT PQ
Sbjct: 73  LWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQ 132

Query: 129 IPDVRLPEDCLL-----------QAF-------------------FGLWVLSIAGSWCNF 169
           IP++ +PE+  L           QAF                    GLW++S+ G+W NF
Sbjct: 133 IPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNF 192

[Close]

BLAST of Chy6G118640 vs. ExPASy Swiss-Prot
Match: Q6DBN4 (Reticulon-like protein B6 OS=Arabidopsis thaliana OX=3702 GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.0e-37
Identity = 94/239 (39.33%), Postives = 125/239 (52.30%), Query Frame = 0


Query: 9   DSVIDNFSAKIDYHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG------AF 68
           +S+++  + KI  H SSSSSDS+ + P  P A+K  +YRLFGR+KPVH VLG       F
Sbjct: 13  ESLMEKIADKIHDHDSSSSSDSEHEKPESPSALKAKIYRLFGREKPVHKVLGGGLPADVF 72

Query: 69  LW---------------------------------------------SYANTFINKTPPQ 128
           LW                                             S A+ F+NKTPP+
Sbjct: 73  LWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPK 132

Query: 129 IPDVRLPEDCLL-----------QAF-------------------FGLWVLSIAGSWCNF 167
           IP++ + E+  L           QAF                   FGLW++S+ G+W NF
Sbjct: 133 IPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNF 192

[Close]

BLAST of Chy6G118640 vs. ExPASy Swiss-Prot
Match: Q9SUR3 (Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.5e-37
Identity = 105/259 (40.54%), Postives = 128/259 (49.42%), Query Frame = 0


Query: 2   ADQQAEPDSVIDNFSAKI----DYHISSSSSDSDDD-----HPSKP-DAVKCHVYRLFGR 61
           A +  E +S++D  S KI    D   SSSSSD +D+      PS P  ++K  VYRLFGR
Sbjct: 17  AVEVVERESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGR 76

Query: 62  DKPVHTVLGA-------------------------------------------------- 121
           ++PVH VLG                                                   
Sbjct: 77  EQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAV 136

Query: 122 -FLWSYANTFINKTPPQIPDVRLPEDCLLQ------------------------------ 170
            FLWS A  FINK+PP+IP+V +PE+ +LQ                              
Sbjct: 137 LFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLI 196

[Close]

BLAST of Chy6G118640 vs. ExPASy Swiss-Prot
Match: Q9SUT9 (Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-35
Identity = 99/255 (38.82%), Postives = 124/255 (48.63%), Query Frame = 0


Query: 2   ADQQAEPDSVIDNFSAKIDYHISSSSSDSDDDH------PSKPDAVKCHVYRLFGRDKPV 61
           A +  E +S+++  S KI +   SSSS S DD        S P ++K  VYRLFGR++PV
Sbjct: 17  AVEVVERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPV 76

Query: 62  HTVLGA---------------------------------------------------FLW 121
           H VLG                                                    FLW
Sbjct: 77  HKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLW 136

Query: 122 SYANTFINKTPPQIPDVRLPEDCLLQ------------------------------AFFG 170
           S A  FI+K+PP+IP+V +PE+ LLQ                              A  G
Sbjct: 137 SNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAG 196

[Close]

BLAST of Chy6G118640 vs. ExPASy Swiss-Prot
Match: Q9SH59 (Reticulon-like protein B3 OS=Arabidopsis thaliana OX=3702 GN=RTNLB3 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.7e-32
Identity = 96/255 (37.65%), Postives = 122/255 (47.84%), Query Frame = 0


Query: 1   MADQQAEPDSVIDNFSAKIDYHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHT--- 60
           MA++    +S+++  S KI  H  SSSS SD D      ++K  +YRLFGR++P+H    
Sbjct: 1   MAEEHKHEESIMEKISEKIHGHDDSSSSSSDSDDDKNSASLKTKIYRLFGREQPLHKLFG 60

Query: 61  ------------------VLGA------------------------------FLWSYANT 120
                             VLGA                              FLWS A+T
Sbjct: 61  GGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSAST 120

Query: 121 FINKTPPQIPDVRLPEDCLLQ------------------------------AFFGLWVLS 170
           FI+K+P  IP+V +PED +LQ                                 GLWVLS
Sbjct: 121 FIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLS 180

[Close]

BLAST of Chy6G118640 vs. ExPASy TrEMBL
Match: A0A0A0L7V4 (Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G363160 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.7e-75
Identity = 160/250 (64.00%), Postives = 163/250 (65.20%), Query Frame = 0


Query: 1   MADQQAEPDSVIDNFSAKIDYHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG 60
           MADQ AEPDSVIDNFSAKID HISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG
Sbjct: 1   MADQPAEPDSVIDNFSAKIDDHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG 60

Query: 61  A---------------------------------------------------FLWSYANT 120
                                                               FLWSYANT
Sbjct: 61  GGKPADVFLWKNKKNSAGVLGGATALWILFELLEYQLITLVCHILIILLAIPFLWSYANT 120

Query: 121 FINKTPPQIPDVRLPEDCLLQ------------------------------AFFGLWVLS 170
           FINKTPPQIPDVRLPEDCLLQ                              AF GLW+LS
Sbjct: 121 FINKTPPQIPDVRLPEDCLLQVVTSLRIEINRIISTLRDVASGRDLRKFLSAFLGLWILS 180

[Close]

BLAST of Chy6G118640 vs. ExPASy TrEMBL
Match: A0A6J1HXQ1 (Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111467592 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.2e-54
Identity = 133/249 (53.41%), Postives = 139/249 (55.82%), Query Frame = 0


Query: 1   MADQQAEPDSVIDNFSAKIDYHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG 60
           MADQ  E DSVID  S KI   ISSSSSDSDD   SK DAVK  V+RLFGRDKPVHTVLG
Sbjct: 1   MADQPRERDSVIDKISDKIGDCISSSSSDSDDGLHSKIDAVKSRVFRLFGRDKPVHTVLG 60

Query: 61  A---------------------------------------------------FLWSYANT 120
                                                               FLWSYANT
Sbjct: 61  GGKPADVFLWRNKKNSAGILGVATALWIVFELIEYQLITLVCHLLILLLAIMFLWSYANT 120

Query: 121 FINKTPPQIPDVRLPEDCLLQ------------------------------AFFGLWVLS 169
           FINKTPPQIPDV+LPE C LQ                               F GLWVLS
Sbjct: 121 FINKTPPQIPDVKLPEVCFLQFVSALRIEINRAISILRGIACGRDLKKFLSVFLGLWVLS 180

[Close]

BLAST of Chy6G118640 vs. ExPASy TrEMBL
Match: A0A6J1G1W3 (Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111449937 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.7e-54
Identity = 132/249 (53.01%), Postives = 139/249 (55.82%), Query Frame = 0


Query: 1   MADQQAEPDSVIDNFSAKIDYHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG 60
           MADQ  E DSVID  S KI   ISSSSSDSDD   SK DAVK  V+RLFGRDKPVHTVLG
Sbjct: 1   MADQPRERDSVIDKISDKIGDCISSSSSDSDDGLHSKIDAVKSRVFRLFGRDKPVHTVLG 60

Query: 61  A---------------------------------------------------FLWSYANT 120
                                                               FLWSYANT
Sbjct: 61  GGKPADVFLWRNKKNSAGILGVATALWIVFELIEYQLITLVCHLLILLLAIMFLWSYANT 120

Query: 121 FINKTPPQIPDVRLPEDCLLQ------------------------------AFFGLWVLS 169
           FINKTPPQIPD++LPE C LQ                               F GLWVLS
Sbjct: 121 FINKTPPQIPDMKLPEVCFLQFVSALRIEINRAISILRGIACGRDLKKFLSVFLGLWVLS 180

[Close]

BLAST of Chy6G118640 vs. ExPASy TrEMBL
Match: A0A6J1CGS9 (Reticulon-like protein OS=Momordica charantia OX=3673 GN=LOC111011386 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.6e-52
Identity = 128/250 (51.20%), Postives = 139/250 (55.60%), Query Frame = 0


Query: 1   MADQQAEPDSVIDNFSAKIDYHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG 60
           MADQ  EPDSVI   S KID   SSSSSDSDDD PSK DA K  V RLFGR+KPV+ VLG
Sbjct: 1   MADQPGEPDSVIGKISEKIDALHSSSSSDSDDDKPSKLDAAKSRVRRLFGREKPVYEVLG 60

Query: 61  A---------------------------------------------------FLWSYANT 120
                                                               F+WS ANT
Sbjct: 61  GGKHADVFLWRNKKNSAGVLGGATALWILFELLEYQLITLVCHILILFLALIFVWSNANT 120

Query: 121 FINKTPPQIPDVRLPEDCL------------------------------LQAFFGLWVLS 170
           FINK+ P IP++RL  DCL                              L AF GLWVLS
Sbjct: 121 FINKSSPHIPEIRLNLDCLPEVANQLRIEINRVISTLRDIASGRDLKKFLSAFIGLWVLS 180

[Close]

BLAST of Chy6G118640 vs. ExPASy TrEMBL
Match: A0A6J1JBF9 (Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111482938 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 9.7e-52
Identity = 128/250 (51.20%), Postives = 143/250 (57.20%), Query Frame = 0


Query: 1   MADQQAEPDSVIDNFSAKIDYHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG 60
           MADQ    DSV D  S KID + SSSSS SDDD PSK +AVK HV+RLFGRDKPVHTVLG
Sbjct: 1   MADQPGGLDSVTDKISGKIDGYNSSSSSGSDDDQPSKINAVKSHVFRLFGRDKPVHTVLG 60

Query: 61  ------AFLW---------------------------------------------SYANT 120
                   LW                                             SYA++
Sbjct: 61  GGKPADVLLWRNKKNSAGILGGATALWILFELLEYQLITLLCHILILVLALVFTRSYASS 120

Query: 121 FINKTPPQIPDVRLPEDCLLQ------------------------------AFFGLWVLS 170
           FINK+PPQIPD RLPED LL+                              AF GLWVLS
Sbjct: 121 FINKSPPQIPDFRLPEDRLLEVVSALRIEINHVISNLRNIASGRDLKKFLRAFIGLWVLS 180

[Close]

BLAST of Chy6G118640 vs. NCBI nr
Match: XP_004149448.1 (reticulon-like protein B1 [Cucumis sativus] >KGN57883.1 hypothetical protein Csa_010794 [Cucumis sativus])

HSP 1 Score: 288 bits (738), Expect = 3.35e-96
Identity = 160/250 (64.00%), Postives = 163/250 (65.20%), Query Frame = 0


Query: 1   MADQQAEPDSVIDNFSAKIDYHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG 60
           MADQ AEPDSVIDNFSAKID HISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG
Sbjct: 1   MADQPAEPDSVIDNFSAKIDDHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG 60

Query: 61  A---------------------------------------------------FLWSYANT 120
                                                               FLWSYANT
Sbjct: 61  GGKPADVFLWKNKKNSAGVLGGATALWILFELLEYQLITLVCHILIILLAIPFLWSYANT 120

Query: 121 FINKTPPQIPDVRLPEDCLLQ------------------------------AFFGLWVLS 169
           FINKTPPQIPDVRLPEDCLLQ                              AF GLW+LS
Sbjct: 121 FINKTPPQIPDVRLPEDCLLQVVTSLRIEINRIISTLRDVASGRDLRKFLSAFLGLWILS 180

[Close]

BLAST of Chy6G118640 vs. NCBI nr
Match: XP_038878127.1 (reticulon-like protein B5 [Benincasa hispida])

HSP 1 Score: 246 bits (628), Expect = 1.78e-79
Identity = 141/250 (56.40%), Postives = 150/250 (60.00%), Query Frame = 0


Query: 1   MADQQAEPDSVIDNFSAKIDYHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG 60
           MADQ  EPDSVID  S KI+ HISSSSS SDDD PSK DAVK HVYRLFGRDKPVH+VLG
Sbjct: 1   MADQPGEPDSVIDKISGKINDHISSSSSGSDDDRPSKVDAVKSHVYRLFGRDKPVHSVLG 60

Query: 61  A---------------------------------------------------FLWSYANT 120
                                                               FLWSYANT
Sbjct: 61  GGKPADVFLWRNKKNSAGVLGGVTALWFLFELLEYQLITLVCHILILLLAIVFLWSYANT 120

Query: 121 FINKTPPQIPDVRLPEDCLLQ------------------------------AFFGLWVLS 169
           FINKTPPQIPD R+PEDCLL+                              AF GLWVLS
Sbjct: 121 FINKTPPQIPDFRVPEDCLLEVVSSLRIEINHVISTLRDIAFGRDLKKFLSAFIGLWVLS 180

[Close]

BLAST of Chy6G118640 vs. NCBI nr
Match: XP_023541342.1 (reticulon-like protein B1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221 bits (562), Expect = 1.92e-69
Identity = 133/249 (53.41%), Postives = 140/249 (56.22%), Query Frame = 0


Query: 1   MADQQAEPDSVIDNFSAKIDYHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG 60
           MADQ  E DSVID  S KI   ISSSSSDSDD   SK DAVK  V+RLFGRDKPVHTVLG
Sbjct: 1   MADQPRERDSVIDKISDKIGDCISSSSSDSDDGLHSKIDAVKSRVFRLFGRDKPVHTVLG 60

Query: 61  A---------------------------------------------------FLWSYANT 120
           A                                                   FLWSYANT
Sbjct: 61  AGKPADVFLWRNKKNSAGILGVATALWIVFELIEYQLITLVCHLLILLLAIMFLWSYANT 120

Query: 121 FINKTPPQIPDVRLPEDCLLQ------------------------------AFFGLWVLS 168
           FINKTPPQIPD++LPE C LQ                               F GLWVLS
Sbjct: 121 FINKTPPQIPDMKLPEVCFLQFVSALRIEINRAISILRGIACGRDLKKFLSVFLGLWVLS 180

[Close]

BLAST of Chy6G118640 vs. NCBI nr
Match: XP_022968328.1 (reticulon-like protein B1 [Cucurbita maxima])

HSP 1 Score: 220 bits (561), Expect = 2.72e-69
Identity = 133/249 (53.41%), Postives = 139/249 (55.82%), Query Frame = 0


Query: 1   MADQQAEPDSVIDNFSAKIDYHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG 60
           MADQ  E DSVID  S KI   ISSSSSDSDD   SK DAVK  V+RLFGRDKPVHTVLG
Sbjct: 1   MADQPRERDSVIDKISDKIGDCISSSSSDSDDGLHSKIDAVKSRVFRLFGRDKPVHTVLG 60

Query: 61  A---------------------------------------------------FLWSYANT 120
                                                               FLWSYANT
Sbjct: 61  GGKPADVFLWRNKKNSAGILGVATALWIVFELIEYQLITLVCHLLILLLAIMFLWSYANT 120

Query: 121 FINKTPPQIPDVRLPEDCLLQ------------------------------AFFGLWVLS 168
           FINKTPPQIPDV+LPE C LQ                               F GLWVLS
Sbjct: 121 FINKTPPQIPDVKLPEVCFLQFVSALRIEINRAISILRGIACGRDLKKFLSVFLGLWVLS 180

[Close]

BLAST of Chy6G118640 vs. NCBI nr
Match: XP_022945796.1 (reticulon-like protein B1 [Cucurbita moschata])

HSP 1 Score: 219 bits (558), Expect = 7.76e-69
Identity = 132/249 (53.01%), Postives = 139/249 (55.82%), Query Frame = 0


Query: 1   MADQQAEPDSVIDNFSAKIDYHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG 60
           MADQ  E DSVID  S KI   ISSSSSDSDD   SK DAVK  V+RLFGRDKPVHTVLG
Sbjct: 1   MADQPRERDSVIDKISDKIGDCISSSSSDSDDGLHSKIDAVKSRVFRLFGRDKPVHTVLG 60

Query: 61  A---------------------------------------------------FLWSYANT 120
                                                               FLWSYANT
Sbjct: 61  GGKPADVFLWRNKKNSAGILGVATALWIVFELIEYQLITLVCHLLILLLAIMFLWSYANT 120

Query: 121 FINKTPPQIPDVRLPEDCLLQ------------------------------AFFGLWVLS 168
           FINKTPPQIPD++LPE C LQ                               F GLWVLS
Sbjct: 121 FINKTPPQIPDMKLPEVCFLQFVSALRIEINRAISILRGIACGRDLKKFLSVFLGLWVLS 180

[Close]

BLAST of Chy6G118640 vs. TAIR 10
Match: AT2G46170.1 (Reticulon family protein )

HSP 1 Score: 168.7 bits (426), Expect = 4.0e-42
Identity = 97/241 (40.25%), Postives = 128/241 (53.11%), Query Frame = 0


Query: 9   DSVIDNFSAKIDYHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLGA------- 68
           +S+++  S KI +H SSSSS+S+ + P  P AVK  +YR+FGR+KPVH VLG        
Sbjct: 13  ESLMEKISEKIHHHDSSSSSESEYEKPDSPSAVKAKIYRMFGREKPVHKVLGGGKPADVF 72

Query: 69  --------------------------------------------FLWSYANTFINKTPPQ 128
                                                       FLWS A+T INKT PQ
Sbjct: 73  LWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQ 132

Query: 129 IPDVRLPEDCLL-----------QAF-------------------FGLWVLSIAGSWCNF 169
           IP++ +PE+  L           QAF                    GLW++S+ G+W NF
Sbjct: 133 IPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNF 192

[Close]

BLAST of Chy6G118640 vs. TAIR 10
Match: AT3G61560.1 (Reticulon family protein )

HSP 1 Score: 157.9 bits (398), Expect = 7.1e-39
Identity = 94/239 (39.33%), Postives = 125/239 (52.30%), Query Frame = 0


Query: 9   DSVIDNFSAKIDYHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHTVLG------AF 68
           +S+++  + KI  H SSSSSDS+ + P  P A+K  +YRLFGR+KPVH VLG       F
Sbjct: 13  ESLMEKIADKIHDHDSSSSSDSEHEKPESPSALKAKIYRLFGREKPVHKVLGGGLPADVF 72

Query: 69  LW---------------------------------------------SYANTFINKTPPQ 128
           LW                                             S A+ F+NKTPP+
Sbjct: 73  LWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPK 132

Query: 129 IPDVRLPEDCLL-----------QAF-------------------FGLWVLSIAGSWCNF 167
           IP++ + E+  L           QAF                   FGLW++S+ G+W NF
Sbjct: 133 IPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNF 192

[Close]

BLAST of Chy6G118640 vs. TAIR 10
Match: AT4G23630.1 (VIRB2-interacting protein 1 )

HSP 1 Score: 155.2 bits (391), Expect = 4.6e-38
Identity = 105/259 (40.54%), Postives = 128/259 (49.42%), Query Frame = 0


Query: 2   ADQQAEPDSVIDNFSAKI----DYHISSSSSDSDDD-----HPSKP-DAVKCHVYRLFGR 61
           A +  E +S++D  S KI    D   SSSSSD +D+      PS P  ++K  VYRLFGR
Sbjct: 17  AVEVVERESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGR 76

Query: 62  DKPVHTVLGA-------------------------------------------------- 121
           ++PVH VLG                                                   
Sbjct: 77  EQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAV 136

Query: 122 -FLWSYANTFINKTPPQIPDVRLPEDCLLQ------------------------------ 170
            FLWS A  FINK+PP+IP+V +PE+ +LQ                              
Sbjct: 137 LFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLI 196

[Close]

BLAST of Chy6G118640 vs. TAIR 10
Match: AT4G11220.1 (VIRB2-interacting protein 2 )

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-36
Identity = 99/255 (38.82%), Postives = 124/255 (48.63%), Query Frame = 0


Query: 2   ADQQAEPDSVIDNFSAKIDYHISSSSSDSDDDH------PSKPDAVKCHVYRLFGRDKPV 61
           A +  E +S+++  S KI +   SSSS S DD        S P ++K  VYRLFGR++PV
Sbjct: 17  AVEVVERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPV 76

Query: 62  HTVLGA---------------------------------------------------FLW 121
           H VLG                                                    FLW
Sbjct: 77  HKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLW 136

Query: 122 SYANTFINKTPPQIPDVRLPEDCLLQ------------------------------AFFG 170
           S A  FI+K+PP+IP+V +PE+ LLQ                              A  G
Sbjct: 137 SNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAG 196

[Close]

BLAST of Chy6G118640 vs. TAIR 10
Match: AT1G64090.1 (Reticulan like protein B3 )

HSP 1 Score: 139.4 bits (350), Expect = 2.6e-33
Identity = 96/255 (37.65%), Postives = 122/255 (47.84%), Query Frame = 0


Query: 1   MADQQAEPDSVIDNFSAKIDYHISSSSSDSDDDHPSKPDAVKCHVYRLFGRDKPVHT--- 60
           MA++    +S+++  S KI  H  SSSS SD D      ++K  +YRLFGR++P+H    
Sbjct: 1   MAEEHKHEESIMEKISEKIHGHDDSSSSSSDSDDDKNSASLKTKIYRLFGREQPLHKLFG 60

Query: 61  ------------------VLGA------------------------------FLWSYANT 120
                             VLGA                              FLWS A+T
Sbjct: 61  GGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSAST 120

Query: 121 FINKTPPQIPDVRLPEDCLLQ------------------------------AFFGLWVLS 170
           FI+K+P  IP+V +PED +LQ                                 GLWVLS
Sbjct: 121 FIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLS 180

The following BLAST results are available for this feature:

BLAST of Chy6G118640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82352	5.7e-41	40.25	Reticulon-like protein B5 OS=Arabidopsis thaliana OX=3702 GN=RTNLB5 PE=1 SV=1	[more]
Q6DBN4	1.0e-37	39.33	Reticulon-like protein B6 OS=Arabidopsis thaliana OX=3702 GN=RTNLB6 PE=1 SV=1	[more]
Q9SUR3	6.5e-37	40.54	Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1	[more]
Q9SUT9	1.6e-35	38.82	Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1	[more]
Q9SH59	3.7e-32	37.65	Reticulon-like protein B3 OS=Arabidopsis thaliana OX=3702 GN=RTNLB3 PE=2 SV=1	[more]

BLAST of Chy6G118640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7V4	3.7e-75	64.00	Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G363160 PE=4 SV=1	[more]
A0A6J1HXQ1	1.2e-54	53.41	Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111467592 PE=4 SV=1	[more]
A0A6J1G1W3	2.7e-54	53.01	Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111449937 PE=4 SV=1	[more]
A0A6J1CGS9	2.6e-52	51.20	Reticulon-like protein OS=Momordica charantia OX=3673 GN=LOC111011386 PE=4 SV=1	[more]
A0A6J1JBF9	9.7e-52	51.20	Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111482938 PE=4 SV=1	[more]

BLAST of Chy6G118640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149448.1	3.35e-96	64.00	reticulon-like protein B1 [Cucumis sativus] >KGN57883.1 hypothetical protein Csa...	[more]
XP_038878127.1	1.78e-79	56.40	reticulon-like protein B5 [Benincasa hispida]	[more]
XP_023541342.1	1.92e-69	53.41	reticulon-like protein B1 [Cucurbita pepo subsp. pepo]	[more]
XP_022968328.1	2.72e-69	53.41	reticulon-like protein B1 [Cucurbita maxima]	[more]
XP_022945796.1	7.76e-69	53.01	reticulon-like protein B1 [Cucurbita moschata]	[more]

BLAST of Chy6G118640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46170.1	4.0e-42	40.25	Reticulon family protein	[more]
AT3G61560.1	7.1e-39	39.33	Reticulon family protein	[more]
AT4G23630.1	4.6e-38	40.54	VIRB2-interacting protein 1	[more]
AT4G11220.1	1.1e-36	38.82	VIRB2-interacting protein 2	[more]
AT1G64090.1	2.6e-33	37.65	Reticulan like protein B3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 89..139 e-value: 8.1E-18 score: 64.9
IPR003388	Reticulon	PROSITE	PS50845	RETICULON	coord: 89..169 score: 22.107098
IPR045064	Reticulon-like protein, plant	PANTHER	PTHR10994	RETICULON	coord: 90..169
IPR045064	Reticulon-like protein, plant	PANTHER	PTHR10994	RETICULON	coord: 1..61
IPR045064	Reticulon-like protein, plant	PANTHER	PTHR10994	RETICULON	coord: 62..91
None	No IPR available	PANTHER	PTHR10994:SF158	RETICULON-LIKE PROTEIN	coord: 90..169
None	No IPR available	PANTHER	PTHR10994:SF158	RETICULON-LIKE PROTEIN	coord: 1..61
None	No IPR available	PANTHER	PTHR10994:SF158	RETICULON-LIKE PROTEIN	coord: 62..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G118640.1	Chy6G118640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009617	response to bacterium
cellular_component	GO:0016020	membrane