Chy6G118120 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G118120
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	NDR1/HIN1-like protein 13
Location	chrH06: 11806080 .. 11806992 (+)
RNA-Seq Expression	Chy6G118120
Synteny	Chy6G118120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTGGATTTCAGCTCAATTATACTCTATCTTTACTATGGAAACACACTCATTGCTACCCAATTCATAGCACCATTCTTAGCATACAAACAAGAATCAATGTTGATTAATATTCATATGGTATCAAGTCAAGTGAGACTACCAATTTTGGAAAGACAAAGATTGCATAAACAATTGGAGACAAATGGGATTAAGCTTGAGCTAAAAGGGAATTTCAGAGCAAGGTCTAATTTTGGTAGTTTGCTTAGATACTCTTATTGGATGCATAGTTATTGCCATTTGTTTGTTGGTGGACCTCCTACTGGTGTTCTAATCAAAAGTAATTGTAAAACAAAACATTGAGACCTTGTCCAAACCAAGTGTCATGCTTTTGCTTCTTCTAATTATTTGGTGGAATTTGGTTGTTTATTTCTTCTTTCCTTTGCTTAAGCTTTCTACCTTCTTGAGGGACAAATAAGATATCATTAAAATAGATGAATTATGGCTCAATTTTTTTTGTATTTGGTCTCCAGGGAGTTAAAATGTAACAAAGACTTTACATTCTGAGATTTTTTTGATAGTATCTTCAATAAAAATAAGGCATATCAATATTGTGCTTCATTTCAATCTAGTAAAAAAAAGTAAATGTTTGTGAGTGTTCAAGAAAATTTACATGCATCTCGACTTATCTTTCAGGACAACTTGTATGACCTTACAACATCTAGACATCATGGAAACTCGAAAGATATTAAATCCGTGGTATACCTGAAATTTACAAACACTAATACATTAAAAGTACAGTTGCCAATAATTATGTTAAATTATAGTAATCCCAAATGAAGCATAAATTTGTAATATATATTTCTTCAATTTTTACAGCAACAAAAGTTTAATCATGAGTAAAGCTAAGGACAATAGGTCATTGGAATGA

mRNA sequence

ATGAGTTTGGATTTCAGCTCAATTATACTCTATCTTTACTATGGAAACACACTCATTGCTACCCAATTCATAGCACCATTCTTAGCATACAAACAAGAATCAATGTTGATTAATATTCATATGGTATCAAGTCAAGTGAGACTACCAATTTTGGAAAGACAAAGATTGCATAAACAATTGGAGACAAATGGGATTAAGCTTGAGCTAAAAGGGAATTTCAGAGCAAGCAACAAAAGTTTAATCATGAGTAAAGCTAAGGACAATAGGTCATTGGAATGA

Coding sequence (CDS)

ATGAGTTTGGATTTCAGCTCAATTATACTCTATCTTTACTATGGAAACACACTCATTGCTACCCAATTCATAGCACCATTCTTAGCATACAAACAAGAATCAATGTTGATTAATATTCATATGGTATCAAGTCAAGTGAGACTACCAATTTTGGAAAGACAAAGATTGCATAAACAATTGGAGACAAATGGGATTAAGCTTGAGCTAAAAGGGAATTTCAGAGCAAGCAACAAAAGTTTAATCATGAGTAAAGCTAAGGACAATAGGTCATTGGAATGA

Protein sequence

MSLDFSSIILYLYYGNTLIATQFIAPFLAYKQESMLINIHMVSSQVRLPILERQRLHKQLETNGIKLELKGNFRASNKSLIMSKAKDNRSLE*

Homology

[Close]

BLAST of Chy6G118120 vs. ExPASy TrEMBL
Match: A0A5D3CVW5 (NDR1/HIN1-like protein 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001590 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.7e-27
Identity = 68/75 (90.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1   MSLDFSSIILYLYYGNTLIATQFIAPFLAYKQESMLINIHMVSSQVRLPILERQRLHKQL 60
           +S+DFSS+ILYLYYGNTLIATQFIAPF AYK+ESMLINIHMVSSQVRLPILERQRL KQL
Sbjct: 252 VSVDFSSMILYLYYGNTLIATQFIAPFSAYKEESMLINIHMVSSQVRLPILERQRLQKQL 311

Query: 61  ETNGIKLELKGNFRA 76
           ETNGIKLELKG FRA
Sbjct: 312 ETNGIKLELKGLFRA 326

[Close]

BLAST of Chy6G118120 vs. ExPASy TrEMBL
Match: A0A1S3BF65 (uncharacterized protein LOC103488950 OS=Cucumis melo OX=3656 GN=LOC103488950 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.7e-27
Identity = 68/75 (90.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1   MSLDFSSIILYLYYGNTLIATQFIAPFLAYKQESMLINIHMVSSQVRLPILERQRLHKQL 60
           +S+DFSS+ILYLYYGNTLIATQFIAPF AYK+ESMLINIHMVSSQVRLPILERQRL KQL
Sbjct: 252 VSVDFSSMILYLYYGNTLIATQFIAPFSAYKEESMLINIHMVSSQVRLPILERQRLQKQL 311

Query: 61  ETNGIKLELKGNFRA 76
           ETNGIKLELKG FRA
Sbjct: 312 ETNGIKLELKGLFRA 326

[Close]

BLAST of Chy6G118120 vs. ExPASy TrEMBL
Match: A0A0A0KQ40 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G597480 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.5e-25
Identity = 66/75 (88.00%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 1   MSLDFSSIILYLYYGNTLIATQFIAPFLAYKQESMLINIHMVSSQVRLPILERQRLHKQL 60
           +S+DFSS+ILYLYYGNTLIATQFIAPF AYK+ESMLINIHMVSSQVRLPILERQRL KQL
Sbjct: 240 VSVDFSSMILYLYYGNTLIATQFIAPFSAYKEESMLINIHMVSSQVRLPILERQRLQKQL 299

Query: 61  ETNGIKLELKGNFRA 76
           E +GIKLELKG FRA
Sbjct: 300 EISGIKLELKGIFRA 314

[Close]

BLAST of Chy6G118120 vs. ExPASy TrEMBL
Match: A0A6J1HSY4 (NDR1/HIN1-like protein 13 OS=Cucurbita maxima OX=3661 GN=LOC111466489 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.4e-20
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 1   MSLDFSSIILYLYYGNTLIATQFIAPFLAYKQESMLINIHMVSSQVRLPILERQRLHKQL 60
           +S+DFSS+IL LYYGNTLIAT+FIAPF A KQ S L+N+HMVSSQVRLPILE  RL KQ+
Sbjct: 237 VSVDFSSMILDLYYGNTLIATRFIAPFSASKQGSHLVNVHMVSSQVRLPILESLRLQKQI 296

Query: 61  ETNGIKLELKGNFRA 76
           E NGIKLEL+G FRA
Sbjct: 297 ENNGIKLELRGIFRA 311

[Close]

BLAST of Chy6G118120 vs. ExPASy TrEMBL
Match: A0A6J1G0D4 (NDR1/HIN1-like protein 13 OS=Cucurbita moschata OX=3662 GN=LOC111449541 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 56/75 (74.67%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1   MSLDFSSIILYLYYGNTLIATQFIAPFLAYKQESMLINIHMVSSQVRLPILERQRLHKQL 60
           +S+DFSS+IL LYYGNTLIAT+FIAPF A KQ S L+N+HM SSQVRLPILE  RL KQ+
Sbjct: 238 VSVDFSSMILDLYYGNTLIATRFIAPFSASKQGSHLVNVHMTSSQVRLPILESLRLQKQI 297

Query: 61  ETNGIKLELKGNFRA 76
           E NGIKLEL+G FRA
Sbjct: 298 ENNGIKLELRGIFRA 312

[Close]

BLAST of Chy6G118120 vs. NCBI nr
Match: XP_008446136.1 (PREDICTED: uncharacterized protein LOC103488950 [Cucumis melo] >KAA0034259.1 NDR1/HIN1-like protein 13 [Cucumis melo var. makuwa] >TYK15662.1 NDR1/HIN1-like protein 13 [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (323), Expect = 1.44e-33
Identity = 68/75 (90.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1   MSLDFSSIILYLYYGNTLIATQFIAPFLAYKQESMLINIHMVSSQVRLPILERQRLHKQL 60
           +S+DFSS+ILYLYYGNTLIATQFIAPF AYK+ESMLINIHMVSSQVRLPILERQRL KQL
Sbjct: 252 VSVDFSSMILYLYYGNTLIATQFIAPFSAYKEESMLINIHMVSSQVRLPILERQRLQKQL 311

Query: 61  ETNGIKLELKGNFRA 75
           ETNGIKLELKG FRA
Sbjct: 312 ETNGIKLELKGLFRA 326

[Close]

BLAST of Chy6G118120 vs. NCBI nr
Match: XP_004135493.1 (pistil-specific extensin-like protein [Cucumis sativus] >KGN51738.1 hypothetical protein Csa_008987 [Cucumis sativus])

HSP 1 Score: 124 bits (312), Expect = 4.83e-32
Identity = 66/75 (88.00%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 1   MSLDFSSIILYLYYGNTLIATQFIAPFLAYKQESMLINIHMVSSQVRLPILERQRLHKQL 60
           +S+DFSS+ILYLYYGNTLIATQFIAPF AYK+ESMLINIHMVSSQVRLPILERQRL KQL
Sbjct: 240 VSVDFSSMILYLYYGNTLIATQFIAPFSAYKEESMLINIHMVSSQVRLPILERQRLQKQL 299

Query: 61  ETNGIKLELKGNFRA 75
           E +GIKLELKG FRA
Sbjct: 300 EISGIKLELKGIFRA 314

[Close]

BLAST of Chy6G118120 vs. NCBI nr
Match: XP_038892121.1 (uncharacterized protein LOC120081374 [Benincasa hispida])

HSP 1 Score: 121 bits (304), Expect = 7.53e-31
Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 1   MSLDFSSIILYLYYGNTLIATQFIAPFLAYKQESMLINIHMVSSQVRLPILERQRLHKQL 60
           +S+DFSS+ILYLY GNTLIATQFIAPF AYK+ESMLINIHMV+SQVRLPILERQRL KQL
Sbjct: 242 VSVDFSSMILYLYSGNTLIATQFIAPFSAYKEESMLINIHMVTSQVRLPILERQRLQKQL 301

Query: 61  ETNGIKLELKGNFRA 75
           ETNGI+L+LKG FRA
Sbjct: 302 ETNGIQLDLKGIFRA 316

[Close]

BLAST of Chy6G118120 vs. NCBI nr
Match: XP_022966925.1 (NDR1/HIN1-like protein 13 [Cucurbita maxima])

HSP 1 Score: 106 bits (264), Expect = 4.95e-25
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 1   MSLDFSSIILYLYYGNTLIATQFIAPFLAYKQESMLINIHMVSSQVRLPILERQRLHKQL 60
           +S+DFSS+IL LYYGNTLIAT+FIAPF A KQ S L+N+HMVSSQVRLPILE  RL KQ+
Sbjct: 237 VSVDFSSMILDLYYGNTLIATRFIAPFSASKQGSHLVNVHMVSSQVRLPILESLRLQKQI 296

Query: 61  ETNGIKLELKGNFRA 75
           E NGIKLEL+G FRA
Sbjct: 297 ENNGIKLELRGIFRA 311

[Close]

BLAST of Chy6G118120 vs. NCBI nr
Match: XP_022945240.1 (NDR1/HIN1-like protein 13 [Cucurbita moschata])

HSP 1 Score: 104 bits (260), Expect = 1.92e-24
Identity = 56/75 (74.67%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1   MSLDFSSIILYLYYGNTLIATQFIAPFLAYKQESMLINIHMVSSQVRLPILERQRLHKQL 60
           +S+DFSS+IL LYYGNTLIAT+FIAPF A KQ S L+N+HM SSQVRLPILE  RL KQ+
Sbjct: 238 VSVDFSSMILDLYYGNTLIATRFIAPFSASKQGSHLVNVHMTSSQVRLPILESLRLQKQI 297

Query: 61  ETNGIKLELKGNFRA 75
           E NGIKLEL+G FRA
Sbjct: 298 ENNGIKLELRGIFRA 312

[Close]

BLAST of Chy6G118120 vs. TAIR 10
Match: AT3G26350.1 (LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13050.1); Has 3534 Blast hits to 2704 proteins in 342 species: Archae - 6; Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162; Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-12
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 2   SLDFSSIILYLYYGNTLIATQFIAPFLAYKQESMLINIHMVSSQVRLPILERQRLHKQLE 61
           S++FS +   LYY NTLIATQ+I PF   K+ SM  N+H+VSSQV+L   + + L +Q+E
Sbjct: 244 SVEFSYVTFELYYYNTLIATQYIEPFKVPKKTSMFANVHLVSSQVQLQATQSRELQRQIE 303

Query: 62  TNGIKLELKGNFRA 76
           T  + L L+G F A
Sbjct: 304 TGPVLLNLRGMFHA 317

[Close]

BLAST of Chy6G118120 vs. TAIR 10
Match: AT1G13050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 538 Blast hits to 510 proteins in 88 species: Archae - 0; Bacteria - 23; Metazoa - 81; Fungi - 36; Plants - 361; Viruses - 8; Other Eukaryotes - 29 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-10
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 2   SLDFSSIILYLYYGNTLIATQFIAPFLAYKQESMLINIHMVSSQVRLPILERQRLHKQLE 61
           S+DFS ++  LY+ NTLIAT+ I PF+  K  SM  + H+VSSQV++ +++ Q L  QL 
Sbjct: 205 SVDFSYVMFELYFYNTLIATEHIEPFIVPKGMSMFTSFHLVSSQVQIQMIQSQDLQLQLG 264

Query: 62  TNGIKLELKGNFRA-SNKSLIM 83
           T  + L L+G F A SN   +M
Sbjct: 265 TGPVLLNLRGTFHARSNLGSLM 286

[Close]

BLAST of Chy6G118120 vs. TAIR 10
Match: AT1G13050.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 260 Blast hits to 259 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-10
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 2   SLDFSSIILYLYYGNTLIATQFIAPFLAYKQESMLINIHMVSSQVRLPILERQRLHKQLE 61
           S+DFS ++  LY+ NTLIAT+ I PF+  K  SM  + H+VSSQV++ +++ Q L  QL 
Sbjct: 73  SVDFSYVMFELYFYNTLIATEHIEPFIVPKGMSMFTSFHLVSSQVQIQMIQSQDLQLQLG 132

Query: 62  TNGIKLELKGNFRA-SNKSLIM 83
           T  + L L+G F A SN   +M
Sbjct: 133 TGPVLLNLRGTFHARSNLGSLM 154

[Close]

BLAST of Chy6G118120 vs. TAIR 10
Match: AT4G26490.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 51.6 bits (122), Expect = 3.9e-07
Identity = 28/74 (37.84%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 1   MSLDFSSIILYLYYGNTLIATQFIAPFLAYKQESMLINIHMVSSQVRLPILERQRLHKQL 60
           + + F  + + L++ N LIA Q + PFL  K E+ L  I ++SS V LP+     L +QL
Sbjct: 156 IEVKFEKLRIELFFFNRLIAAQVVQPFLQKKHETRLEPIRLISSLVGLPVNHAVELRRQL 215

Query: 61  ETNGIKLELKGNFR 75
           E N I+ E++G F+
Sbjct: 216 ENNKIEYEIRGTFK 229

[Close]

BLAST of Chy6G118120 vs. TAIR 10
Match: AT5G56050.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT4G26490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 3.1e-04
Identity = 23/74 (31.08%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 1   MSLDFSSIILYLYYGNTLIATQFIAPFLAYKQESMLINIHMVSSQVRLPILERQRLHKQL 60
           +++ F ++++ L++ +T IATQ + PF     ++ L  I ++S+ V LP+     L +Q+
Sbjct: 170 LNVRFENLMVELWFADTKIATQGVLPFSQRNGKTRLEPIRLISNLVFLPVNHILELRRQV 229

Query: 61  ETNGIKLELKGNFR 75
            +N I  E++ NFR
Sbjct: 230 TSNRIAYEIRSNFR 243

The following BLAST results are available for this feature:

BLAST of Chy6G118120 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G118120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CVW5	7.7e-27	90.67	NDR1/HIN1-like protein 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BF65	7.7e-27	90.67	uncharacterized protein LOC103488950 OS=Cucumis melo OX=3656 GN=LOC103488950 PE=...	[more]
A0A0A0KQ40	1.5e-25	88.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G597480 PE=4 SV=1	[more]
A0A6J1HSY4	5.4e-20	76.00	NDR1/HIN1-like protein 13 OS=Cucurbita maxima OX=3661 GN=LOC111466489 PE=4 SV=1	[more]
A0A6J1G0D4	1.6e-19	74.67	NDR1/HIN1-like protein 13 OS=Cucurbita moschata OX=3662 GN=LOC111449541 PE=4 SV=...	[more]

BLAST of Chy6G118120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446136.1	1.44e-33	90.67	PREDICTED: uncharacterized protein LOC103488950 [Cucumis melo] >KAA0034259.1 NDR...	[more]
XP_004135493.1	4.83e-32	88.00	pistil-specific extensin-like protein [Cucumis sativus] >KGN51738.1 hypothetical...	[more]
XP_038892121.1	7.53e-31	85.33	uncharacterized protein LOC120081374 [Benincasa hispida]	[more]
XP_022966925.1	4.95e-25	76.00	NDR1/HIN1-like protein 13 [Cucurbita maxima]	[more]
XP_022945240.1	1.92e-24	74.67	NDR1/HIN1-like protein 13 [Cucurbita moschata]	[more]

BLAST of Chy6G118120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26350.1	2.4e-12	48.65	LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED ...	[more]
AT1G13050.1	1.0e-10	45.12	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G13050.2	1.0e-10	45.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G26490.1	3.9e-07	37.84	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT5G56050.1	3.1e-04	31.08	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 2..76
None	No IPR available	PANTHER	PTHR31852:SF130	PROLINE-RICH RECEPTOR-LIKE KINASE	coord: 2..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G118120.1	Chy6G118120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane