Chy6G116530 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G116530
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Nigrin b-like
Location	chrH06: 9649841 .. 9650707 (-)
RNA-Seq Expression	Chy6G116530
Synteny	Chy6G116530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAAATTGTGTTGAGCATTGTTGTAGCCTTCTCTCTCACCACCCATCTTGCCATGGCAGTGCCCCCCAACTACGGATATCGAGCAGTCCCTGGAGCCACACATCTTGTGGGTCGAGATGGATTGTGTTTGGAGATGTCTCCATGGTTTTACAAAGGTAGTAATTTTCCAACTCGATTATCACCCTGCGACGAACAAAAAAAACAAACTCAGTTATGGACAGTTCTCCAAGATGGAACGATTCGACCAATGAATGATAGATATTGCTTGGTTTCTTACGTCCCTGTTAACTTCATAACCAATGTGGTAGTAAGCGAGTGTGCTGAGGAGCCAAATTCTAACAAGAAATGGACTCATAAGGAGGACGGAACCATAGTCCATGTTGGGTCAGGAATGGTTCTAACAGGAAATTTAGACTATGTGACATTACAAAGGAACAAAAATGCACCATCACAAAACTGGGAAGCAACGAAAAGTTTAACCCCAATGGTTGCAAACATAAAATGGCTTGAAAACTTGTGTTTGCAATCGACGAAAGATTCGAATTATGTAGAGTTGGATGAATGTAATAGTGAAAATAAGAGCCAACGTTGGTCATTGTATGGAGATGGAACCATTAGAAAACATGTGAATAGAAACTATTGCTTGACTTCTAAACAAGATTTTGGTCGTTTTGTAGTTGTGTCTAAATGTGAAGATAAACCACAACAACGTTGGGATCTTGATGCTAAAGACAATACAATTAACCATCCCAATACTGACATGGTCATGGATGTGCTTAGTGTGCCTTTTGATGATCTTCCATTAGCGGTCGTTACAAACCACCGTGATGGAAGTGCTAGCCAACAATGGATTATCTACTAA

mRNA sequence

ATGAAAGAAATTGTGTTGAGCATTGTTGTAGCCTTCTCTCTCACCACCCATCTTGCCATGGCAGTGCCCCCCAACTACGGATATCGAGCAGTCCCTGGAGCCACACATCTTGTGGGTCGAGATGGATTGTGTTTGGAGATGTCTCCATGGTTTTACAAAGGTAGTAATTTTCCAACTCGATTATCACCCTGCGACGAACAAAAAAAACAAACTCAGTTATGGACAGTTCTCCAAGATGGAACGATTCGACCAATGAATGATAGATATTGCTTGGTTTCTTACGTCCCTGTTAACTTCATAACCAATGTGGTAGTAAGCGAGTGTGCTGAGGAGCCAAATTCTAACAAGAAATGGACTCATAAGGAGGACGGAACCATAGTCCATGTTGGGTCAGGAATGGTTCTAACAGGAAATTTAGACTATGTGACATTACAAAGGAACAAAAATGCACCATCACAAAACTGGGAAGCAACGAAAAGTTTAACCCCAATGGTTGCAAACATAAAATGGCTTGAAAACTTGTGTTTGCAATCGACGAAAGATTCGAATTATGTAGAGTTGGATGAATGTAATAGTGAAAATAAGAGCCAACGTTGGTCATTGTATGGAGATGGAACCATTAGAAAACATGTGAATAGAAACTATTGCTTGACTTCTAAACAAGATTTTGGTCGTTTTGTAGTTGTGTCTAAATGTGAAGATAAACCACAACAACGTTGGGATCTTGATGCTAAAGACAATACAATTAACCATCCCAATACTGACATGGTCATGGATGTGCTTAGTGTGCCTTTTGATGATCTTCCATTAGCGGTCGTTACAAACCACCGTGATGGAAGTGCTAGCCAACAATGGATTATCTACTAA

Coding sequence (CDS)

ATGAAAGAAATTGTGTTGAGCATTGTTGTAGCCTTCTCTCTCACCACCCATCTTGCCATGGCAGTGCCCCCCAACTACGGATATCGAGCAGTCCCTGGAGCCACACATCTTGTGGGTCGAGATGGATTGTGTTTGGAGATGTCTCCATGGTTTTACAAAGGTAGTAATTTTCCAACTCGATTATCACCCTGCGACGAACAAAAAAAACAAACTCAGTTATGGACAGTTCTCCAAGATGGAACGATTCGACCAATGAATGATAGATATTGCTTGGTTTCTTACGTCCCTGTTAACTTCATAACCAATGTGGTAGTAAGCGAGTGTGCTGAGGAGCCAAATTCTAACAAGAAATGGACTCATAAGGAGGACGGAACCATAGTCCATGTTGGGTCAGGAATGGTTCTAACAGGAAATTTAGACTATGTGACATTACAAAGGAACAAAAATGCACCATCACAAAACTGGGAAGCAACGAAAAGTTTAACCCCAATGGTTGCAAACATAAAATGGCTTGAAAACTTGTGTTTGCAATCGACGAAAGATTCGAATTATGTAGAGTTGGATGAATGTAATAGTGAAAATAAGAGCCAACGTTGGTCATTGTATGGAGATGGAACCATTAGAAAACATGTGAATAGAAACTATTGCTTGACTTCTAAACAAGATTTTGGTCGTTTTGTAGTTGTGTCTAAATGTGAAGATAAACCACAACAACGTTGGGATCTTGATGCTAAAGACAATACAATTAACCATCCCAATACTGACATGGTCATGGATGTGCTTAGTGTGCCTTTTGATGATCTTCCATTAGCGGTCGTTACAAACCACCGTGATGGAAGTGCTAGCCAACAATGGATTATCTACTAA

Protein sequence

MKEIVLSIVVAFSLTTHLAMAVPPNYGYRAVPGATHLVGRDGLCLEMSPWFYKGSNFPTRLSPCDEQKKQTQLWTVLQDGTIRPMNDRYCLVSYVPVNFITNVVVSECAEEPNSNKKWTHKEDGTIVHVGSGMVLTGNLDYVTLQRNKNAPSQNWEATKSLTPMVANIKWLENLCLQSTKDSNYVELDECNSENKSQRWSLYGDGTIRKHVNRNYCLTSKQDFGRFVVVSKCEDKPQQRWDLDAKDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGSASQQWIIY*

Homology

[Close]

BLAST of Chy6G116530 vs. ExPASy Swiss-Prot
Match: P33183 (Nigrin b OS=Sambucus nigra OX=4202 PE=1 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-31
Identity = 84/258 (32.56%), Postives = 141/258 (54.65%), Query Frame = 0


Query: 36  HLVGRDGLCLEMSPWFYKGSNFPTRLSPCDEQKKQTQLWTVLQDGTIRPMNDRYCLVSYV 95
           ++VGRDGLC+++    Y     P +L PC  Q+ Q   WT   D TIR M    C+ +  
Sbjct: 311 NIVGRDGLCVDVRNG-YDTDGTPLQLWPCGTQRNQR--WTFDSDDTIRSMGK--CMTAN- 370

Query: 96  PVNFITNVVVSECAEEPNSNKKWTHKEDGTIVHVGSGMVLT----GNLDYVTLQRNKNAP 155
            +N  +N+V+  C+    +  KW    DG+I++  SG+V+T     +   + L+ N  A 
Sbjct: 371 GLNNGSNIVIFNCSTAAENAIKWEVPIDGSIINPSSGLVMTAPRAASRTILLLEDNIYAA 430

Query: 156 SQNWEATKSLTPMVANIKWLENLCLQSTKDSNYVELDECNSENKSQRWSLYGDGTIRKHV 215
           SQ W  T ++ P+VA+I   + +CLQS  ++N V +++C + +  Q+W+LYGD TIR + 
Sbjct: 431 SQGWTVTNNVKPIVASIVGYKEMCLQSNGENNGVWMEDCEATSLQQQWALYGDRTIRVNS 490

Query: 216 NRNYCLTSK-QDFGRFVVVSKCEDKPQQRWDLDAKDNTINHPNTDMVMDV--LSVPFDDL 275
            R  C+T+   +    +++ KC+  P QRW  ++ D  I +P +  VMDV   +V   ++
Sbjct: 491 TRGLCVTTNGYNSKDLIIILKCQGLPSQRWFFNS-DGAIVNPKSRHVMDVRASNVSLREI 550

Query: 276 PLAVVTNHRDGSASQQWI 287
            +   T    G+ +QQW+
Sbjct: 551 IIFPAT----GNPNQQWV 557

[Close]

BLAST of Chy6G116530 vs. ExPASy Swiss-Prot
Match: Q41358 (Ribosome-inactivating protein SNAI OS=Sambucus nigra OX=4202 GN=SNA-I PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.1e-31
Identity = 87/254 (34.25%), Postives = 134/254 (52.76%), Query Frame = 0


Query: 39  GRDGLCLEMSPWFYKGSNFPTRLSPCDEQKKQTQLWTVLQDGTIRPMNDRYCLVSYVPVN 98
           G DGLC+++    Y   N P +L PC  +    QLWT   DGTIR +    CL +     
Sbjct: 327 GWDGLCVDVRYGHYIDGN-PVQLRPCGNE--CNQLWTFRTDGTIRWLGK--CLTA----- 386

Query: 99  FITNVVVSECAEEPNSNKKWTHKEDGTIVHVGSGMVLT----GNLDYVTLQRNKNAPSQN 158
             ++V++ +C   P    KW    DGTI +  SG+VLT         ++L+ N +A  Q 
Sbjct: 387 -SSSVMIYDCNTVPPEATKWVVSIDGTITNPHSGLVLTAPQAAEGTALSLENNIHAARQG 446

Query: 159 WEATKSLTPMVANIKWLENLCLQSTKDSNYVELDECNSENKSQRWSLYGDGTIRKHVNRN 218
           W     + P+V  I   + +CL+   ++N+V L++C      Q W+LYGDGTIR + NR+
Sbjct: 447 W-TVGDVEPLVTFIVGYKQMCLRENGENNFVWLEDCVLNRVQQEWALYGDGTIRVNSNRS 506

Query: 219 YCLTSK-QDFGRFVVVSKCEDKPQQRWDLDAKDNTINHPNTDMVMDVLSVPFDDLPLAVV 278
            C+TS+  +    +V+ KCE    QRW  +  + TI++PN  ++MDV      D+ L  +
Sbjct: 507 LCVTSEDHEPSDLIVILKCEGSGNQRWVFNT-NGTISNPNAKLLMDVAQ---RDVSLRKI 564

Query: 279 TNHR-DGSASQQWI 287
             +R  G+ +QQWI
Sbjct: 567 ILYRPTGNPNQQWI 564

[Close]

BLAST of Chy6G116530 vs. ExPASy Swiss-Prot
Match: O22415 (Ribosome-inactivating protein SNAIf OS=Sambucus nigra OX=4202 GN=SNA-If PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.5e-30
Identity = 85/254 (33.46%), Postives = 131/254 (51.57%), Query Frame = 0


Query: 39  GRDGLCLEMSPWFYKGSNFPTRLSPCDEQKKQTQLWTVLQDGTIRPMNDRYCLVSYVPVN 98
           G DGLC+++    Y   N   +L PC  +    QLWT   DGTIR +    CL +     
Sbjct: 327 GWDGLCVDVRDGHYIDGN-TVQLGPCGNE--CNQLWTFRTDGTIRWLGK--CLTT----- 386

Query: 99  FITNVVVSECAEEPNSNKKWTHKEDGTIVHVGSGMVLT----GNLDYVTLQRNKNAPSQN 158
             ++V++ +C   P    KW    DGTI +  SG+VLT         ++L+ N +A  Q 
Sbjct: 387 -SSSVMIYDCNTVPPEATKWVVSTDGTITNPRSGLVLTAPQAAEGTALSLENNIHAARQG 446

Query: 159 WEATKSLTPMVANIKWLENLCLQSTKDSNYVELDECNSENKSQRWSLYGDGTIRKHVNRN 218
           W     + P+V  I   + +CL    ++N+V L++C      Q W+LYGDGTIR + NR+
Sbjct: 447 W-TVGDVEPLVTFIVGYKQMCLTENGENNFVWLEDCVLNRVEQEWALYGDGTIRVNSNRS 506

Query: 219 YCLTSK-QDFGRFVVVSKCEDKPQQRWDLDAKDNTINHPNTDMVMDVLSVPFDDLPL-AV 278
            C+TS+  +    +V+ KCE    QRW  +  + TI++PN  +VMDV      ++ L  +
Sbjct: 507 LCVTSEDHEPSDLIVILKCEGSGNQRWVFNT-NGTISNPNAKLVMDVAQ---SNVSLRKI 564

Query: 279 VTNHRDGSASQQWI 287
           +     G+ +QQWI
Sbjct: 567 ILYPPTGNPNQQWI 564

[Close]

BLAST of Chy6G116530 vs. ExPASy Swiss-Prot
Match: P02879 (Ricin OS=Ricinus communis OX=3988 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-25
Identity = 78/230 (33.91%), Postives = 118/230 (51.30%), Query Frame = 0


Query: 37  LVGRDGLCLEMSPWFYKGSNFPTRLSPCDEQKKQTQLWTVLQDGTIRPMNDRYCLVSYVP 96
           +VGR+GLC+++    +   N   +L PC       QLWT+ +D TIR          Y P
Sbjct: 327 IVGRNGLCVDVRDGRFHNGN-AIQLWPCKSNTDANQLWTLKRDNTIRSNGKCLTTYGYSP 386

Query: 97  VNFITNVVVSECAEEPNSNKKWTHKEDGTIVHVGSGMVL---TGNL-DYVTLQRNKNAPS 156
             +   V++ +C        +W   ++GTI++  S +VL   +GN    +T+Q N  A S
Sbjct: 387 GVY---VMIYDCNTAATDATRWQIWDNGTIINPRSSLVLAATSGNSGTTLTVQTNIYAVS 446

Query: 157 QNWEATKSLTPMVANIKWLENLCLQSTKDSNYVELDECNSENKSQRWSLYGDGTIRKHVN 216
           Q W  T +  P V  I  L  LCLQ+  +S  V +++C+SE   Q+W+LY DG+IR   N
Sbjct: 447 QGWLPTNNTQPFVTTIVGLYGLCLQA--NSGQVWIEDCSSEKAEQQWALYADGSIRPQQN 506

Query: 217 RNYCLTSKQDFGRFVV-VSKCEDKPQ-QRWDLDAKDNTINHPNTDMVMDV 261
           R+ CLTS  +    VV +  C      QRW +   D TI +  + +V+DV
Sbjct: 507 RDNCLTSDSNIRETVVKILSCGPASSGQRW-MFKNDGTILNLYSGLVLDV 549

[Close]

BLAST of Chy6G116530 vs. ExPASy Swiss-Prot
Match: P06750 (Agglutinin OS=Ricinus communis OX=3988 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-25
Identity = 83/257 (32.30%), Postives = 129/257 (50.19%), Query Frame = 0


Query: 37  LVGRDGLCLEMS-PWFYKGSNFPTRLSPCDEQKKQTQLWTVLQDGTIRPMNDRYCLVSYV 96
           +VGR+GLC++++   F+ G+  P +L PC       QLWT+ +D TIR       +    
Sbjct: 315 IVGRNGLCVDVTGEEFFDGN--PIQLWPCKSNTDWNQLWTLRKDSTIRSNGKCLTISKSS 374

Query: 97  PVNFITNVVVSECAEEPNSNKKWTHKEDGTIVHVGSGMVL---TGNL-DYVTLQRNKNAP 156
           P      VV+  C+       +W   ++ TI++  SG+VL   +GN    +T+Q N  A 
Sbjct: 375 PRQ---QVVIYNCSTATVGATRWQIWDNRTIINPRSGLVLAATSGNSGTKLTVQTNIYAV 434

Query: 157 SQNWEATKSLTPMVANIKWLENLCLQSTKDSNYVELDECNSENKSQRWSLYGDGTIRKHV 216
           SQ W  T +  P V  I  L  +CLQ+  +S  V L++C SE   Q+W+LY DG+IR   
Sbjct: 435 SQGWLPTNNTQPFVTTIVGLYGMCLQA--NSGKVWLEDCTSEKAEQQWALYADGSIRPQQ 494

Query: 217 NRNYCLTSKQDF-GRFVVVSKCEDKPQ-QRWDLDAKDNTINHPNTDMVMDVLSVPFDDLP 276
           NR+ CLT+  +  G  V +  C      QRW +   D TI +    +V+DV     D   
Sbjct: 495 NRDNCLTTDANIKGTVVKILSCGPASSGQRW-MFKNDGTILNLYNGLVLDVRR--SDPSL 554

Query: 277 LAVVTNHRDGSASQQWI 287
             ++ +   G+ +Q W+
Sbjct: 555 KQIIVHPFHGNLNQIWL 561

[Close]

BLAST of Chy6G116530 vs. ExPASy TrEMBL
Match: A0A0A0L756 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G219180 PE=4 SV=1)

HSP 1 Score: 557.0 bits (1434), Expect = 4.7e-155
Identity = 262/288 (90.97%), Postives = 276/288 (95.83%), Query Frame = 0


Query: 1   MKEIVLSIVVAFSLTTHLAMAVPPNYGYRAVPGATHLVGRDGLCLEMSPWFYKGSNFPTR 60
           MKEIVLSIVVAFSLTTHLAMAVP +YGY+ VPGATHLVGRDGLCLEMSPWFYKGSNFPTR
Sbjct: 1   MKEIVLSIVVAFSLTTHLAMAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTR 60

Query: 61  LSPCDEQKKQTQLWTVLQDGTIRPMNDRYCLVSYVPVNFITNVVVSECAEEPNSNKKWTH 120
           LSPC+EQKKQTQLWTVLQD TIRPMNDRYCLVSYV VNFITNVVVSECA+EP+SNKKW H
Sbjct: 61  LSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIH 120

Query: 121 KEDGTIVHVGSGMVLTGNLDYVTLQRNKNAPSQNWEATKSLTPMVANIKWLENLCLQSTK 180
           KED TIVHVGSGMVLTGN +YVT+QRNKNAPSQ+WEATKSLTPMVANIKWLENLCLQSTK
Sbjct: 121 KEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTK 180

Query: 181 DSNYVELDECNSENKSQRWSLYGDGTIRKHVNRNYCLTSKQDFGRFVVVSKCEDKPQQRW 240
           DSNYV+LD CNSENKSQ WSLYGDGTIRKHVNRNYCLTS+QDFGRFV VSKCEDKPQQRW
Sbjct: 181 DSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRW 240

Query: 241 DLDAKDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGSASQQWIIY 289
            L A+DNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDG+A+Q+WIIY
Sbjct: 241 GLGAEDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGTATQRWIIY 288

[Close]

BLAST of Chy6G116530 vs. ExPASy TrEMBL
Match: A0A5A7T854 (Nigrin b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001540 PE=3 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 4.4e-129
Identity = 222/291 (76.29%), Postives = 250/291 (85.91%), Query Frame = 0


Query: 1   MKEIVLSIVVAFSLTTHLAMAVPPNYG----YRAVPGATHLVGRDGLCLEMSPWFYKGSN 60
           MKEIVLSI+VAFSLTTHLAMAVP NYG    Y  VPGATHLVGRDGLCLEMSPWFY+G+N
Sbjct: 1   MKEIVLSIIVAFSLTTHLAMAVPSNYGYGGEYGGVPGATHLVGRDGLCLEMSPWFYRGNN 60

Query: 61  FPTRLSPCDEQKKQTQLWTVLQDGTIRPMNDRYCLVSYVPVNFITNVVVSECAEEPNSNK 120
           FPTRLSPCDE KKQTQLWTV+ DGTIRPMND++CLV+ V V  I   VV ECA+E NSNK
Sbjct: 61  FPTRLSPCDEHKKQTQLWTVVGDGTIRPMNDKFCLVADVLVGVINKAVVRECAKESNSNK 120

Query: 121 KWTHKEDGTIVHVGSGMVLTGNLDYVTLQRNKNAPSQNWEATKSLTPMVANIKWLENLCL 180
           +WTHK+DGTI HV SGMVLTG+ DYVTLQ NKN PSQ+WEAT+S TPM+ANI+WL NLCL
Sbjct: 121 RWTHKKDGTITHVESGMVLTGDSDYVTLQSNKNTPSQSWEATESSTPMIANIEWLNNLCL 180

Query: 181 QSTKDSNYVELDECNSENKSQRWSLYGDGTIRKHVNRNYCLTSKQDFGRFVVVSKCEDKP 240
           QST DSN+V L+ CN ENK QRW+LYGDGTIR++VNRNYCLTS +  GRF+V+SKCEDKP
Sbjct: 181 QSTDDSNHVGLNGCNRENKDQRWALYGDGTIRQNVNRNYCLTSDEYLGRFIVMSKCEDKP 240

Query: 241 QQRWDLDAKDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGSASQQWII 288
           QQRW+L AKD+TI+HPNTDMVMDVL VP+ D   AVVTN RDGSASQ+W I
Sbjct: 241 QQRWNLGAKDSTIDHPNTDMVMDVLFVPYYDFSSAVVTNRRDGSASQRWTI 291

[Close]

BLAST of Chy6G116530 vs. ExPASy TrEMBL
Match: A0A5D3BL95 (Nigrin b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold252G00260 PE=4 SV=1)

HSP 1 Score: 469.9 bits (1208), Expect = 7.5e-129
Identity = 222/291 (76.29%), Postives = 250/291 (85.91%), Query Frame = 0


Query: 1   MKEIVLSIVVAFSLTTHLAMAVPPNYG----YRAVPGATHLVGRDGLCLEMSPWFYKGSN 60
           MKEIVLSI+VAFSLTTHLAMAVP NYG    Y  VPGATHLVGRDGLCLEMSPWFY+G+N
Sbjct: 1   MKEIVLSIIVAFSLTTHLAMAVPYNYGYGGEYGGVPGATHLVGRDGLCLEMSPWFYRGNN 60

Query: 61  FPTRLSPCDEQKKQTQLWTVLQDGTIRPMNDRYCLVSYVPVNFITNVVVSECAEEPNSNK 120
           FPTRLSPCDE KKQTQLWTV+ DGTIRPMND++CLV+ V V  I   VV ECA+E NSNK
Sbjct: 61  FPTRLSPCDEHKKQTQLWTVVGDGTIRPMNDKFCLVADVLVGVINKAVVRECAKESNSNK 120

Query: 121 KWTHKEDGTIVHVGSGMVLTGNLDYVTLQRNKNAPSQNWEATKSLTPMVANIKWLENLCL 180
           +WTHK+DGTI HV SGMVLTG+ DYVTLQ NKN PSQ+WEAT+S TPM+ANI+WL NLCL
Sbjct: 121 RWTHKKDGTITHVESGMVLTGDSDYVTLQSNKNTPSQSWEATESSTPMIANIEWLNNLCL 180

Query: 181 QSTKDSNYVELDECNSENKSQRWSLYGDGTIRKHVNRNYCLTSKQDFGRFVVVSKCEDKP 240
           QST DSN+V L+ CN ENK QRW+LYGDGTIR++VNRNYCLTS +  GRF+V+SKCEDKP
Sbjct: 181 QSTDDSNHVGLNGCNRENKDQRWALYGDGTIRQNVNRNYCLTSDEYLGRFIVMSKCEDKP 240

Query: 241 QQRWDLDAKDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGSASQQWII 288
           QQRW+L AKD+TI+HPNTDMVMDVL VP+ D   AVVTN RDGSASQ+W I
Sbjct: 241 QQRWNLGAKDSTIDHPNTDMVMDVLFVPYYDFSSAVVTNRRDGSASQRWTI 291

[Close]

BLAST of Chy6G116530 vs. ExPASy TrEMBL
Match: A0A1S4E0X9 (nigrin b-like OS=Cucumis melo OX=3656 GN=LOC103496121 PE=4 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 9.8e-129
Identity = 221/291 (75.95%), Postives = 250/291 (85.91%), Query Frame = 0


Query: 1   MKEIVLSIVVAFSLTTHLAMAVPPNYG----YRAVPGATHLVGRDGLCLEMSPWFYKGSN 60
           MKEIVLSI+VAFSLTTHLAMAVP NYG    Y  VP ATHLVGRDGLCLEMSPWFY+G+N
Sbjct: 1   MKEIVLSIIVAFSLTTHLAMAVPSNYGYGGEYGGVPRATHLVGRDGLCLEMSPWFYRGNN 60

Query: 61  FPTRLSPCDEQKKQTQLWTVLQDGTIRPMNDRYCLVSYVPVNFITNVVVSECAEEPNSNK 120
           FPTRLSPCDE KKQTQLWTV+ DGTIRPMND++CLV+ V V  I   VV ECA+EPNSNK
Sbjct: 61  FPTRLSPCDEHKKQTQLWTVVGDGTIRPMNDKFCLVADVLVGLINKAVVRECAKEPNSNK 120

Query: 121 KWTHKEDGTIVHVGSGMVLTGNLDYVTLQRNKNAPSQNWEATKSLTPMVANIKWLENLCL 180
           +WTHK+DGTI HV SGMVLTG+ DYVTLQ NKN PSQ+WEAT+S TPM+ANI+WL NLCL
Sbjct: 121 RWTHKKDGTITHVESGMVLTGDSDYVTLQSNKNTPSQSWEATESSTPMIANIEWLNNLCL 180

Query: 181 QSTKDSNYVELDECNSENKSQRWSLYGDGTIRKHVNRNYCLTSKQDFGRFVVVSKCEDKP 240
           QST DSN+V L+ CN ENK QRW+LYGDGTIR++VNRNYCLTS +  GRF+V+SKCEDKP
Sbjct: 181 QSTDDSNHVGLNGCNRENKDQRWALYGDGTIRQNVNRNYCLTSDEYLGRFIVMSKCEDKP 240

Query: 241 QQRWDLDAKDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGSASQQWII 288
           QQRW+L AKD+TI+HPN+DMVMDVL VP+ D   AVVTN RDGSASQ+W I
Sbjct: 241 QQRWNLGAKDSTIDHPNSDMVMDVLFVPYYDFSSAVVTNRRDGSASQRWTI 291

[Close]

BLAST of Chy6G116530 vs. ExPASy TrEMBL
Match: Q9SLV9 (XSP30 OS=Cucumis sativus OX=3659 GN=XSP30 PE=2 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 3.9e-117
Identity = 210/292 (71.92%), Postives = 236/292 (80.82%), Query Frame = 0


Query: 1   MKEIVLSIVVAFSLTTHLAMAVPPNY----GYRAVPGATHLVGRDGLCLEMSPWFY-KGS 60
           MKEIVLSI+VAFSLTT LA+AVPPNY    GY  VPGATHLVGRDGLCLEMSPW+   G 
Sbjct: 1   MKEIVLSIIVAFSLTTQLAIAVPPNYGYGVGYGGVPGATHLVGRDGLCLEMSPWYKPAGI 60

Query: 61  NFPTRLSPCDEQKKQTQLWTVLQDGTIRPMNDRYCLVSYVPVNFITNVVVSECAEEPNSN 120
           NFPTRLSPCDE KKQTQLWT++ DGTIRPMND++CL + V    I   VVSEC +  + N
Sbjct: 61  NFPTRLSPCDE-KKQTQLWTIVGDGTIRPMNDKFCLAAEVFYGVINKAVVSECGKVSDPN 120

Query: 121 KKWTHKEDGTIVHVGSGMVLTGNLDYVTLQRNKNAPSQNWEATKSLTPMVANIKWLENLC 180
           KKWT K DGTI  V S MVLTG+LDYVTLQ NK  PSQ+WE T+SL  MVANI+WL NLC
Sbjct: 121 KKWTQKNDGTIALVDSRMVLTGDLDYVTLQSNKYTPSQSWEVTESLNSMVANIEWLNNLC 180

Query: 181 LQSTKDSNYVELDECNSENKSQRWSLYGDGTIRKHVNRNYCLTSKQDFGRFVVVSKCEDK 240
           LQST DS++V L+ CN++NK QRW+LY DGTIR+HVN+NYCLTS QDFGRFVVVSKCEDK
Sbjct: 181 LQSTDDSSHVGLNGCNTDNKYQRWALYADGTIRQHVNKNYCLTSDQDFGRFVVVSKCEDK 240

Query: 241 PQQRWDLDAKDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGSASQQWII 288
           PQQRW LDAKD TI+HPNTDMV+DV SVP    P  +VTN RDGSASQ+W I
Sbjct: 241 PQQRWSLDAKDYTIDHPNTDMVLDVFSVPDSTFPSVLVTNRRDGSASQRWTI 291

[Close]

BLAST of Chy6G116530 vs. NCBI nr
Match: XP_004146289.1 (nigrin b [Cucumis sativus] >KGN57583.1 hypothetical protein Csa_010930 [Cucumis sativus])

HSP 1 Score: 554 bits (1428), Expect = 1.23e-198
Identity = 262/288 (90.97%), Postives = 276/288 (95.83%), Query Frame = 0


Query: 1   MKEIVLSIVVAFSLTTHLAMAVPPNYGYRAVPGATHLVGRDGLCLEMSPWFYKGSNFPTR 60
           MKEIVLSIVVAFSLTTHLAMAVP +YGY+ VPGATHLVGRDGLCLEMSPWFYKGSNFPTR
Sbjct: 1   MKEIVLSIVVAFSLTTHLAMAVPSDYGYQVVPGATHLVGRDGLCLEMSPWFYKGSNFPTR 60

Query: 61  LSPCDEQKKQTQLWTVLQDGTIRPMNDRYCLVSYVPVNFITNVVVSECAEEPNSNKKWTH 120
           LSPC+EQKKQTQLWTVLQD TIRPMNDRYCLVSYV VNFITNVVVSECA+EP+SNKKW H
Sbjct: 61  LSPCNEQKKQTQLWTVLQDETIRPMNDRYCLVSYVSVNFITNVVVSECAKEPHSNKKWIH 120

Query: 121 KEDGTIVHVGSGMVLTGNLDYVTLQRNKNAPSQNWEATKSLTPMVANIKWLENLCLQSTK 180
           KED TIVHVGSGMVLTGN +YVT+QRNKNAPSQ+WEATKSLTPMVANIKWLENLCLQSTK
Sbjct: 121 KEDRTIVHVGSGMVLTGNSNYVTVQRNKNAPSQSWEATKSLTPMVANIKWLENLCLQSTK 180

Query: 181 DSNYVELDECNSENKSQRWSLYGDGTIRKHVNRNYCLTSKQDFGRFVVVSKCEDKPQQRW 240
           DSNYV+LD CNSENKSQ WSLYGDGTIRKHVNRNYCLTS+QDFGRFV VSKCEDKPQQRW
Sbjct: 181 DSNYVQLDGCNSENKSQHWSLYGDGTIRKHVNRNYCLTSEQDFGRFVAVSKCEDKPQQRW 240

Query: 241 DLDAKDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGSASQQWIIY 288
            L A+DNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDG+A+Q+WIIY
Sbjct: 241 GLGAEDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGTATQRWIIY 288

[Close]

BLAST of Chy6G116530 vs. NCBI nr
Match: KAA0039058.1 (nigrin b-like [Cucumis melo var. makuwa])

HSP 1 Score: 468 bits (1204), Expect = 1.93e-164
Identity = 222/291 (76.29%), Postives = 250/291 (85.91%), Query Frame = 0


Query: 1   MKEIVLSIVVAFSLTTHLAMAVPPNYGYRA----VPGATHLVGRDGLCLEMSPWFYKGSN 60
           MKEIVLSI+VAFSLTTHLAMAVP NYGY      VPGATHLVGRDGLCLEMSPWFY+G+N
Sbjct: 1   MKEIVLSIIVAFSLTTHLAMAVPSNYGYGGEYGGVPGATHLVGRDGLCLEMSPWFYRGNN 60

Query: 61  FPTRLSPCDEQKKQTQLWTVLQDGTIRPMNDRYCLVSYVPVNFITNVVVSECAEEPNSNK 120
           FPTRLSPCDE KKQTQLWTV+ DGTIRPMND++CLV+ V V  I   VV ECA+E NSNK
Sbjct: 61  FPTRLSPCDEHKKQTQLWTVVGDGTIRPMNDKFCLVADVLVGVINKAVVRECAKESNSNK 120

Query: 121 KWTHKEDGTIVHVGSGMVLTGNLDYVTLQRNKNAPSQNWEATKSLTPMVANIKWLENLCL 180
           +WTHK+DGTI HV SGMVLTG+ DYVTLQ NKN PSQ+WEAT+S TPM+ANI+WL NLCL
Sbjct: 121 RWTHKKDGTITHVESGMVLTGDSDYVTLQSNKNTPSQSWEATESSTPMIANIEWLNNLCL 180

Query: 181 QSTKDSNYVELDECNSENKSQRWSLYGDGTIRKHVNRNYCLTSKQDFGRFVVVSKCEDKP 240
           QST DSN+V L+ CN ENK QRW+LYGDGTIR++VNRNYCLTS +  GRF+V+SKCEDKP
Sbjct: 181 QSTDDSNHVGLNGCNRENKDQRWALYGDGTIRQNVNRNYCLTSDEYLGRFIVMSKCEDKP 240

Query: 241 QQRWDLDAKDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGSASQQWII 287
           QQRW+L AKD+TI+HPNTDMVMDVL VP+ D   AVVTN RDGSASQ+W I
Sbjct: 241 QQRWNLGAKDSTIDHPNTDMVMDVLFVPYYDFSSAVVTNRRDGSASQRWTI 291

[Close]

BLAST of Chy6G116530 vs. NCBI nr
Match: TYJ99749.1 (nigrin b-like [Cucumis melo var. makuwa])

HSP 1 Score: 467 bits (1202), Expect = 3.88e-164
Identity = 222/291 (76.29%), Postives = 250/291 (85.91%), Query Frame = 0


Query: 1   MKEIVLSIVVAFSLTTHLAMAVPPNYGYRA----VPGATHLVGRDGLCLEMSPWFYKGSN 60
           MKEIVLSI+VAFSLTTHLAMAVP NYGY      VPGATHLVGRDGLCLEMSPWFY+G+N
Sbjct: 1   MKEIVLSIIVAFSLTTHLAMAVPYNYGYGGEYGGVPGATHLVGRDGLCLEMSPWFYRGNN 60

Query: 61  FPTRLSPCDEQKKQTQLWTVLQDGTIRPMNDRYCLVSYVPVNFITNVVVSECAEEPNSNK 120
           FPTRLSPCDE KKQTQLWTV+ DGTIRPMND++CLV+ V V  I   VV ECA+E NSNK
Sbjct: 61  FPTRLSPCDEHKKQTQLWTVVGDGTIRPMNDKFCLVADVLVGVINKAVVRECAKESNSNK 120

Query: 121 KWTHKEDGTIVHVGSGMVLTGNLDYVTLQRNKNAPSQNWEATKSLTPMVANIKWLENLCL 180
           +WTHK+DGTI HV SGMVLTG+ DYVTLQ NKN PSQ+WEAT+S TPM+ANI+WL NLCL
Sbjct: 121 RWTHKKDGTITHVESGMVLTGDSDYVTLQSNKNTPSQSWEATESSTPMIANIEWLNNLCL 180

Query: 181 QSTKDSNYVELDECNSENKSQRWSLYGDGTIRKHVNRNYCLTSKQDFGRFVVVSKCEDKP 240
           QST DSN+V L+ CN ENK QRW+LYGDGTIR++VNRNYCLTS +  GRF+V+SKCEDKP
Sbjct: 181 QSTDDSNHVGLNGCNRENKDQRWALYGDGTIRQNVNRNYCLTSDEYLGRFIVMSKCEDKP 240

Query: 241 QQRWDLDAKDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGSASQQWII 287
           QQRW+L AKD+TI+HPNTDMVMDVL VP+ D   AVVTN RDGSASQ+W I
Sbjct: 241 QQRWNLGAKDSTIDHPNTDMVMDVLFVPYYDFSSAVVTNRRDGSASQRWTI 291

[Close]

BLAST of Chy6G116530 vs. NCBI nr
Match: XP_016901886.1 (PREDICTED: nigrin b-like [Cucumis melo])

HSP 1 Score: 467 bits (1201), Expect = 5.51e-164
Identity = 221/291 (75.95%), Postives = 250/291 (85.91%), Query Frame = 0


Query: 1   MKEIVLSIVVAFSLTTHLAMAVPPNYGYRA----VPGATHLVGRDGLCLEMSPWFYKGSN 60
           MKEIVLSI+VAFSLTTHLAMAVP NYGY      VP ATHLVGRDGLCLEMSPWFY+G+N
Sbjct: 1   MKEIVLSIIVAFSLTTHLAMAVPSNYGYGGEYGGVPRATHLVGRDGLCLEMSPWFYRGNN 60

Query: 61  FPTRLSPCDEQKKQTQLWTVLQDGTIRPMNDRYCLVSYVPVNFITNVVVSECAEEPNSNK 120
           FPTRLSPCDE KKQTQLWTV+ DGTIRPMND++CLV+ V V  I   VV ECA+EPNSNK
Sbjct: 61  FPTRLSPCDEHKKQTQLWTVVGDGTIRPMNDKFCLVADVLVGLINKAVVRECAKEPNSNK 120

Query: 121 KWTHKEDGTIVHVGSGMVLTGNLDYVTLQRNKNAPSQNWEATKSLTPMVANIKWLENLCL 180
           +WTHK+DGTI HV SGMVLTG+ DYVTLQ NKN PSQ+WEAT+S TPM+ANI+WL NLCL
Sbjct: 121 RWTHKKDGTITHVESGMVLTGDSDYVTLQSNKNTPSQSWEATESSTPMIANIEWLNNLCL 180

Query: 181 QSTKDSNYVELDECNSENKSQRWSLYGDGTIRKHVNRNYCLTSKQDFGRFVVVSKCEDKP 240
           QST DSN+V L+ CN ENK QRW+LYGDGTIR++VNRNYCLTS +  GRF+V+SKCEDKP
Sbjct: 181 QSTDDSNHVGLNGCNRENKDQRWALYGDGTIRQNVNRNYCLTSDEYLGRFIVMSKCEDKP 240

Query: 241 QQRWDLDAKDNTINHPNTDMVMDVLSVPFDDLPLAVVTNHRDGSASQQWII 287
           QQRW+L AKD+TI+HPN+DMVMDVL VP+ D   AVVTN RDGSASQ+W I
Sbjct: 241 QQRWNLGAKDSTIDHPNSDMVMDVLFVPYYDFSSAVVTNRRDGSASQRWTI 291

[Close]

BLAST of Chy6G116530 vs. NCBI nr
Match: XP_038904853.1 (nigrin b-like [Benincasa hispida])

HSP 1 Score: 451 bits (1161), Expect = 6.10e-158
Identity = 218/290 (75.17%), Postives = 245/290 (84.48%), Query Frame = 0


Query: 1   MKEIVLSIVVAFSLTTHLAMAVPPNYGYRAVPGATHLVGRDGLCLEMSPWFYKGSNFPTR 60
           MKEIVLSIVVAFSLTTHL MAV PNYGY   PG+THLVGRDGLCLEM PW+ K S FPTR
Sbjct: 1   MKEIVLSIVVAFSLTTHLVMAVRPNYGYGGFPGSTHLVGRDGLCLEMFPWYEKDSYFPTR 60

Query: 61  LSPCDEQKKQTQLWTVLQDGTIRPMNDRYCLVSYVPVNFITNVVVSECAEEPNSNKKWTH 120
           LSPC+ QKKQTQLWTVLQDGTIRPMND+YCLV+Y  V  + NVVV++C++E N NK W H
Sbjct: 61  LSPCNVQKKQTQLWTVLQDGTIRPMNDKYCLVAYYRVGVLNNVVVNDCSKESNPNKIWNH 120

Query: 121 KEDGTIVHVGSGMVLTGNLD-YVTLQRNKNAPSQNWEATKSLTPMVANIKWLENLCLQST 180
           K+DGT+VHV SGMVLTG  D YVTL+ N+N PSQ+WEAT+SLTPMVANIKWL+NLCLQST
Sbjct: 121 KKDGTVVHVESGMVLTGKSDAYVTLEPNENVPSQSWEATESLTPMVANIKWLDNLCLQST 180

Query: 181 KDSNYVELDECNSENKSQRWSLYGDGTIRKHVNRNYCLTSKQDFGRFVVVSKCEDKPQQR 240
           +DSN+V LD CN EN  QRW+LYGDGTIR  VNRNYCLTS+QD GRF+VVS+CEDKPQQR
Sbjct: 181 EDSNHVGLDGCNRENMKQRWALYGDGTIRHSVNRNYCLTSEQDVGRFIVVSRCEDKPQQR 240

Query: 241 WDLDAKDNTINHP-NTDMVMDVLSVPFDDLPLAVVTNHRDGSASQQWIIY 288
           W L A+D+TINHP NTDMVMDV  VP   +P AVV  HRDGS SQ+WIIY
Sbjct: 241 WGLSAEDSTINHPANTDMVMDVFMVPTTLVP-AVVMGHRDGSPSQRWIIY 289

The following BLAST results are available for this feature:

BLAST of Chy6G116530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P33183	1.1e-31	32.56	Nigrin b OS=Sambucus nigra OX=4202 PE=1 SV=2	[more]
Q41358	3.1e-31	34.25	Ribosome-inactivating protein SNAI OS=Sambucus nigra OX=4202 GN=SNA-I PE=1 SV=1	[more]
O22415	4.5e-30	33.46	Ribosome-inactivating protein SNAIf OS=Sambucus nigra OX=4202 GN=SNA-If PE=1 SV=...	[more]
P02879	2.0e-25	33.91	Ricin OS=Ricinus communis OX=3988 PE=1 SV=1	[more]
P06750	2.6e-25	32.30	Agglutinin OS=Ricinus communis OX=3988 PE=1 SV=1	[more]

BLAST of Chy6G116530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L756	4.7e-155	90.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G219180 PE=4 SV=1	[more]
A0A5A7T854	4.4e-129	76.29	Nigrin b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001540 ...	[more]
A0A5D3BL95	7.5e-129	76.29	Nigrin b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold252G00260 ...	[more]
A0A1S4E0X9	9.8e-129	75.95	nigrin b-like OS=Cucumis melo OX=3656 GN=LOC103496121 PE=4 SV=1	[more]
Q9SLV9	3.9e-117	71.92	XSP30 OS=Cucumis sativus OX=3659 GN=XSP30 PE=2 SV=1	[more]

BLAST of Chy6G116530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146289.1	1.23e-198	90.97	nigrin b [Cucumis sativus] >KGN57583.1 hypothetical protein Csa_010930 [Cucumis ...	[more]
KAA0039058.1	1.93e-164	76.29	nigrin b-like [Cucumis melo var. makuwa]	[more]
TYJ99749.1	3.88e-164	76.29	nigrin b-like [Cucumis melo var. makuwa]	[more]
XP_016901886.1	5.51e-164	75.95	PREDICTED: nigrin b-like [Cucumis melo]	[more]
XP_038904853.1	6.10e-158	75.17	nigrin b-like [Benincasa hispida]	[more]

BLAST of Chy6G116530 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000772	Ricin B, lectin domain	SMART	SM00458	ricin_3	coord: 162..288 e-value: 2.8E-16 score: 70.1 coord: 32..158 e-value: 3.1E-7 score: 40.0
IPR000772	Ricin B, lectin domain	PFAM	PF00652	Ricin_B_lectin	coord: 36..155 e-value: 3.9E-18 score: 65.9 coord: 172..285 e-value: 4.6E-21 score: 75.4
IPR000772	Ricin B, lectin domain	PROSITE	PS50231	RICIN_B_LECTIN	coord: 31..158 score: 21.2295
IPR000772	Ricin B, lectin domain	PROSITE	PS50231	RICIN_B_LECTIN	coord: 161..288 score: 27.553499
IPR000772	Ricin B, lectin domain	CDD	cd00161	RICIN	coord: 36..156 e-value: 7.92078E-16 score: 70.227
IPR000772	Ricin B, lectin domain	CDD	cd00161	RICIN	coord: 173..287 e-value: 1.33715E-19 score: 80.6274
None	No IPR available	GENE3D	2.80.10.50		coord: 163..288 e-value: 2.0E-30 score: 107.0
None	No IPR available	GENE3D	2.80.10.50		coord: 32..158 e-value: 2.0E-23 score: 84.6
IPR035992	Ricin B-like lectins	SUPERFAMILY	50370	Ricin B-like lectins	coord: 32..156
IPR035992	Ricin B-like lectins	SUPERFAMILY	50370	Ricin B-like lectins	coord: 165..287

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G116530.1	Chy6G116530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017148	negative regulation of translation
molecular_function	GO:0030598	rRNA N-glycosylase activity