Chy6G115340 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G115340
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH06: 7612434 .. 7612664 (+)
RNA-Seq Expression	Chy6G115340
Synteny	Chy6G115340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGAGAAACCCAAAACAAGACTTCATTAATTGCCGAAAAACTCACCCAGAACCCACCGGGGAGGAGATTGGACAGAGGGAAGATCGGCGCAGCGGGATCGGCGTTGGAGGAGAAGCTCGGCTCGCTCACGGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGGAGACGTCGTCGCTCACGGCTACTTGACAGACGTGGTGTCGTGGGAGGGAGTTGA

mRNA sequence

ATGGGTGGAGAAACCCAAAACAAGACTTCATTAATTGCCGAAAAACTCACCCAGAACCCACCGGGGAGGAGATTGGACAGAGGGAAGATCGGCGCAGCGGGATCGGCGTTGGAGGAGAAGCTCGGCTCGCTCACGGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGGAGACGTCGTCGCTCACGGCTACTTGACAGACGTGGTGTCGTGGGAGGGAGTTGA

Coding sequence (CDS)

ATGGGTGGAGAAACCCAAAACAAGACTTCATTAATTGCCGAAAAACTCACCCAGAACCCACCGGGGAGGAGATTGGACAGAGGGAAGATCGGCGCAGCGGGATCGGCGTTGGAGGAGAAGCTCGGCTCGCTCACGGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGGAGACGTCGTCGCTCACGGCTACTTGACAGACGTGGTGTCGTGGGAGGGAGTTGA

Protein sequence

MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGSALEEKLGSLTACGPEKEMARLTAWRRRRSRLLDRRGVVGGS*

Homology

[Close]

BLAST of Chy6G115340 vs. ExPASy TrEMBL
Match: A0A0A0L650 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186715 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.7e-09
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 1  MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAG 35
          MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAG
Sbjct: 1  MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAG 34

[Close]

BLAST of Chy6G115340 vs. NCBI nr
Match: KGN57445.1 (hypothetical protein Csa_009817 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 1.31e-14
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 1  MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAG 34
          MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAG
Sbjct: 1  MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAG 34

The following BLAST results are available for this feature:

BLAST of Chy6G115340 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G115340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L650	2.7e-09	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186715 PE=4 SV=1	[more]

BLAST of Chy6G115340 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57445.1	1.31e-14	100.00	hypothetical protein Csa_009817 [Cucumis sativus]	[more]

BLAST of Chy6G115340 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G115340.1	Chy6G115340.1	mRNA