Chy6G109560 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G109560
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	28 kDa ribonucleoprotein, chloroplastic
Location	chrH06: 2909506 .. 2911675 (-)
RNA-Seq Expression	Chy6G109560
Synteny	Chy6G109560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAATCTCGGCCGCCGTTGTGCAAGGAGAGGCGGCTGTGACGGTTGGAGTTGAAGAGGGTGTGGAGGAGGAGACGGAGGTGGAAGGTGGTTCTCCTGTGGAGTCTGGGAGTACTAAGCTGTACTTTGGGAATCTGCCTTACAGTGTTGATAGTTCACAGCTCGCCGCTATCGTTCAGGATTATGGTATCGCCGAGCTCATTGAGGTACATTGCCTGCAAATGTCACTGAGTAGTTTCTATATTGAATTCTAGTAAATGATCACTTCTAAACAATTACATCATATGAAAACTTTGCTTTAGAATCAAATTCTCACGAGTTATCTGGCAAATCACAATGTACGGTTGGGGTATGAGAGCAACAGTTTCAATTCCTTTTGTATAATAGATGCTTGATTCCTAGGAGCAACTTAAGAAGCCAACTATATGACTATAGATTTAAATGTTTCTGAAGTAATGACTTCAAATCTTAGTGTCACCTACCAAAGGTTCATATATGAGTTTTTGAGAAGTTGTTGGTTTAGGATATCGTATCATAAAGTTGTATAGAATTGAGATGCATGTTATTAGCTCAAACATACTAAGAAAAGCCACTGGCATGTTTAGGGCATATAGGTTTGGTAGTTGGTGGCAACTACTTGTTGAACAAATAAGCTATTATTTGTTCTATCAATTGCTGAAGAGTATGATTAAATTACTAGGGTGCTAACAGTGACAAGATGGCATCCAGTATTTTATTTATTTCAGGAATGTGCGGAGCTGTATACGTAAATAGCGGGTGACCTTTTACCTTCACTACCACTAAAATCCAAGACCATAGAATTAACCTTAATTATTGCCTCAAGTAAATAAATTAACTACCATGAGTTGGTCCAGTAATCATTTGGAAAGGGTGAAAAAGAAAAAATTAATTTAAATCATCGTGGCCATCCACCAAACGTTGTTCTATGAGATTAAAAAAAAAAAAAAGCCACCAACCTTAATTAGGAAAAAAAGAACATGGGGAAATCTAGTCTCATTCTTGCAGTGAAGGCTTGAGTTTGATGGAACTCTATTGCTAAGTAATAAGATCGGGGATCTACTCTCATCCTTGCAACGAAGACTCGAGTTTGATGGCACTCTCTAGTCTTCAGCTACTTATCTGCTCTAGTTCAGATATTTAAAATACTGTTTCTGTTGTGCTGAAGAAATGTTAAGGCTCTCTGCTCATGGCTTTTGCTGTTTTCATCGCGTCTTCACATATTAATGGTAAACGAAAAAATGCATCCTTGTAAAATGAAGACATGTAGTTGTATACTAATAACGATATTTAACTTATAGAAACTCTTGTTGGGCTTTAAGAAAGAAGTTCCAGTGTAGCAAAATTTTATCTGTCAAATATTTAAAACAGACTGGTCTATTGCCTGCATTTGATCTTTACTTTGAATTATTTCTTCAAGAGCATATTTTCACATTAAATCTCGTGATTGTTTAGAGTTTCTAACCAATTCGAGTGGTATAAGGTTCTTTACGACAGAAATACTGGAAAAAGTAGAGGATTTGCATTTGTAACCATGAGCAGTATTGAAGATTGCAATAAAGTGATTGAAAATCTGGATGGAACTGTGAGAATCTCTCTCTGTCACACTTTGTATTCTCCTTTATGTTACTAAATCTATCCTTAGATTGTAAGCTCATAAATAATTGGAACTATTGAATTCGGATGCTAAATATGAGTATCACTTGTATAATCAGGCTTACATGGGCAGAATTTTGAGGGTTAATTTCTCAGACAAACCCAAGCCCAAGGAACCTTTGTATCCAGAAACTGAGTATAAACTTTTTGTCGGAAACTTATCCTGGTCAGTAACATCTGAAATTTTGACACAAGCATTTCAAGAATATGGAAATGTGGTAGGAGCAAGGGTCATTTATGACGGGGAGACCGGAAAGTCACGTGGTTATGGCTTTGTTTCTTACGCAACAAAATCAGAAATGGAAACAGCTCTTGAAGCTATTAATGAACTGGTAAGTGTCTGTCTTGTTTCTAATCATCTTTTTGTTCACATTGATATTATATCATATAATATCATGTACTTAGTTCAATTGTCTGTTGTTTTCGACTTCATAGGAACTTGAAGGCAGGGTAATACGTGTAAGCTTGGCTGAAGGAAAACAGGCACATGGGTAG

mRNA sequence

ATGATAATCTCGGCCGCCGTTGTGCAAGGAGAGGCGGCTGTGACGGTTGGAGTTGAAGAGGGTGTGGAGGAGGAGACGGAGGTGGAAGGTGGTTCTCCTGTGGAGTCTGGGAGTACTAAGCTGTACTTTGGGAATCTGCCTTACAGTGTTGATAGTTCACAGCTCGCCGCTATCGTTCAGGATTATGGTATCGCCGAGCTCATTGAGGTTCTTTACGACAGAAATACTGGAAAAAGTAGAGGATTTGCATTTGTAACCATGAGCAGTATTGAAGATTGCAATAAAGTGATTGAAAATCTGGATGGAACTGCTTACATGGGCAGAATTTTGAGGGTTAATTTCTCAGACAAACCCAAGCCCAAGGAACCTTTGTATCCAGAAACTGAGTATAAACTTTTTGTCGGAAACTTATCCTGGTCAGTAACATCTGAAATTTTGACACAAGCATTTCAAGAATATGGAAATGTGGTAGGAGCAAGGGTCATTTATGACGGGGAGACCGGAAAGTCACGTGGTTATGGCTTTGTTTCTTACGCAACAAAATCAGAAATGGAAACAGCTCTTGAAGCTATTAATGAACTGGAACTTGAAGGCAGGGTAATACGTGTAAGCTTGGCTGAAGGAAAACAGGCACATGGGTAG

Coding sequence (CDS)

ATGATAATCTCGGCCGCCGTTGTGCAAGGAGAGGCGGCTGTGACGGTTGGAGTTGAAGAGGGTGTGGAGGAGGAGACGGAGGTGGAAGGTGGTTCTCCTGTGGAGTCTGGGAGTACTAAGCTGTACTTTGGGAATCTGCCTTACAGTGTTGATAGTTCACAGCTCGCCGCTATCGTTCAGGATTATGGTATCGCCGAGCTCATTGAGGTTCTTTACGACAGAAATACTGGAAAAAGTAGAGGATTTGCATTTGTAACCATGAGCAGTATTGAAGATTGCAATAAAGTGATTGAAAATCTGGATGGAACTGCTTACATGGGCAGAATTTTGAGGGTTAATTTCTCAGACAAACCCAAGCCCAAGGAACCTTTGTATCCAGAAACTGAGTATAAACTTTTTGTCGGAAACTTATCCTGGTCAGTAACATCTGAAATTTTGACACAAGCATTTCAAGAATATGGAAATGTGGTAGGAGCAAGGGTCATTTATGACGGGGAGACCGGAAAGTCACGTGGTTATGGCTTTGTTTCTTACGCAACAAAATCAGAAATGGAAACAGCTCTTGAAGCTATTAATGAACTGGAACTTGAAGGCAGGGTAATACGTGTAAGCTTGGCTGAAGGAAAACAGGCACATGGGTAG

Protein sequence

MIISAAVVQGEAAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYATKSEMETALEAINELELEGRVIRVSLAEGKQAHG*

Homology

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BLAST of Chy6G109560 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.3e-38
Identity = 92/212 (43.40%), Postives = 132/212 (62.26%), Query Frame = 0


Query: 6   AVVQGEA----AVTVGVEEGVEEETEVEGGSPVES--GSTKLYFGNLPYSVDSSQLAAIV 65
           AV++GE+    AV+ G E  V +E  VEGG          KL+ GNLPY VDS +LA I 
Sbjct: 16  AVLEGESDPEGAVSWGSETQVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIF 75

Query: 66  QDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPK 125
              G+ E+ EV+Y+R T +SRGF FVTMS++E+  K +E L+G    GR L VN    P+
Sbjct: 76  DAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN-KAAPR 135

Query: 126 PKEPLYPETEY----KLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGF 185
                 P  ++    +++VGNL W V +  L Q F E+G VV ARV+ D ETG+SRG+GF
Sbjct: 136 GSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGF 195

Query: 186 VSYATKSEMETALEAINELELEGRVIRVSLAE 208
           V+ +++SE+  A+ A++   L+GR +RV++AE
Sbjct: 196 VTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226

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BLAST of Chy6G109560 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.3e-38
Identity = 85/211 (40.28%), Postives = 133/211 (63.03%), Query Frame = 0


Query: 11  EAAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEV 70
           E A++   EE +EE+ E      VE G  +LY GNLP+S+ SSQL+ I  + G    +E+
Sbjct: 88  EVALSAEEEEEIEEKEERVESESVEGG--RLYVGNLPFSMTSSQLSEIFAEAGTVANVEI 147

Query: 71  LYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKPKE-------- 130
           +YDR T +SRGFAFVTM S+E+  + I   DG+   GR ++VNF + P+  E        
Sbjct: 148 VYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKI 207

Query: 131 ----PLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSY 190
                 + ++ +KL+V NLSW++TS+ L  AF +    + A+VIYD  +G+SRG+GF+++
Sbjct: 208 RSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITF 267

Query: 191 ATKSEMETALEAINELELEGRVIRVSLAEGK 210
           ++   M +AL+ +NE+ELEGR +R+++A  K
Sbjct: 268 SSAEAMNSALDTMNEVELEGRPLRLNVAGQK 296

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BLAST of Chy6G109560 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.4e-38
Identity = 87/204 (42.65%), Postives = 129/204 (63.24%), Query Frame = 0


Query: 11  EAAVTVGVEEGVE-EETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIE 70
           EA    G  + VE +E E E   P E    KL+ GNLPY VDS  LA + +  G+ E+ E
Sbjct: 109 EAVGDAGESDEVEADEEEEEFQEPPE--DAKLFVGNLPYDVDSEGLARLFEQAGVVEIAE 168

Query: 71  VLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFS----DKPKPKEPLY 130
           V+Y+R+T +SRGF FVTMS++E+  K +E  +     GR+L VN +    ++P+ + P  
Sbjct: 169 VIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPE-RPPRT 228

Query: 131 PETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYATKSEME 190
            E  Y+++VGN+ W +    L Q F E+G VV ARV+YD ETG+SRG+GFV+ A+++EM 
Sbjct: 229 FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMS 288

Query: 191 TALEAINELELEGRVIRVSLAEGK 210
            A+  ++   L+GR IRV++AE +
Sbjct: 289 DAIANLDGQSLDGRTIRVNVAEDR 309

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BLAST of Chy6G109560 vs. ExPASy Swiss-Prot
Match: Q9FGS0 (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.8e-36
Identity = 83/197 (42.13%), Postives = 123/197 (62.44%), Query Frame = 0


Query: 15  TVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDR 74
           +V V+E  E E  V  G P      KL+ GNLPY VDS  LA + +  G  E+ EV+Y+R
Sbjct: 91  SVTVDESFESEDGV--GFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNR 150

Query: 75  NTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFS----DKPKPKEPLYPETEY 134
           +T +SRGF FVTMS++E+  K +E  +     GR L VN +     +P+ ++P   +  +
Sbjct: 151 DTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPE-RQPRVYDAAF 210

Query: 135 KLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYATKSEMETALEA 194
           +++VGNL W V S  L + F E+G VV ARV+ D ETG+SRG+GFV  + ++E+  A+ A
Sbjct: 211 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 270

Query: 195 INELELEGRVIRVSLAE 208
           ++   LEGR I+V++AE
Sbjct: 271 LDGQNLEGRAIKVNVAE 284

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BLAST of Chy6G109560 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.3e-36
Identity = 80/201 (39.80%), Postives = 122/201 (60.70%), Query Frame = 0


Query: 19  EEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGK 78
           ++GVEEE          S   K++ GNLP+S DS+ LA + +  G  E++EV+YD+ TG+
Sbjct: 74  DDGVEEERNF-------SPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGR 133

Query: 79  SRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKPKEPL----------YPET 138
           SRGF FVTMSS E+     +  +G    GR LRVN    P+ +E              ++
Sbjct: 134 SRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDS 193

Query: 139 EYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYATKSEMETAL 198
             +++VGNL+W V  + L   F E G VV A+V+YD ++G+SRG+GFV+Y++  E+  A+
Sbjct: 194 SNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAI 253

Query: 199 EAINELELEGRVIRVSLAEGK 210
           E+++ ++L GR IRVS AE +
Sbjct: 254 ESLDGVDLNGRAIRVSPAEAR 267

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BLAST of Chy6G109560 vs. ExPASy TrEMBL
Match: A0A0A0L496 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134590 PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 6.8e-111
Identity = 209/213 (98.12%), Postives = 211/213 (99.06%), Query Frame = 0


Query: 1   MIISAAVVQGEAAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQ 60
           MIISAAVVQGE AVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQ
Sbjct: 64  MIISAAVVQGETAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQ 123

Query: 61  DYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKP 120
           DYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDG+AYMGRILRVNFSDKPKP
Sbjct: 124 DYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFSDKPKP 183

Query: 121 KEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYAT 180
           KEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSY+T
Sbjct: 184 KEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYST 243

Query: 181 KSEMETALEAINELELEGRVIRVSLAEGKQAHG 214
           KSEMETALE INELELEGRVIRVSLAEGKQAHG
Sbjct: 244 KSEMETALETINELELEGRVIRVSLAEGKQAHG 276

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BLAST of Chy6G109560 vs. ExPASy TrEMBL
Match: A0A1S4DSH7 (LOW QUALITY PROTEIN: putative G3BP-like protein OS=Cucumis melo OX=3656 GN=LOC103483544 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.4e-102
Identity = 193/203 (95.07%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MIISAAVVQGEAAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQ 60
           +IISAAVVQGE AV VGVEEGVEEET VEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQ
Sbjct: 64  LIISAAVVQGETAVMVGVEEGVEEETAVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQ 123

Query: 61  DYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKP 120
           D+G+AELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKP
Sbjct: 124 DHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKP 183

Query: 121 KEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYAT 180
           KEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIY+GETGKSRGYGFVSY+T
Sbjct: 184 KEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSRGYGFVSYST 243

Query: 181 KSEMETALEAINELELEGRVIRV 204
           KSEMETALEA+NE+ELEGRVIRV
Sbjct: 244 KSEMETALEALNEVELEGRVIRV 266

[Close]

BLAST of Chy6G109560 vs. ExPASy TrEMBL
Match: A0A5D3CZH4 (Putative G3BP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002080 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.6e-98
Identity = 185/194 (95.36%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MIISAAVVQGEAAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQ 60
           +IISAAVVQGE AVTVGVEEGVEEET VEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQ
Sbjct: 64  LIISAAVVQGETAVTVGVEEGVEEETAVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQ 123

Query: 61  DYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKP 120
           D+G+AELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKP
Sbjct: 124 DHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKP 183

Query: 121 KEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYAT 180
           KEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIY+GETGKSRGYGFVSY+T
Sbjct: 184 KEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSRGYGFVSYST 243

Query: 181 KSEMETALEAINEL 195
           KSEMETALEA+NE+
Sbjct: 244 KSEMETALEALNEV 257

[Close]

BLAST of Chy6G109560 vs. ExPASy TrEMBL
Match: A0A6J1DUT6 (28 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024570 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.1e-96
Identity = 185/215 (86.05%), Postives = 197/215 (91.63%), Query Frame = 0


Query: 3   ISAAVVQGEAAVTVGVEEGVEEE----TEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAI 62
           ISAAVVQGE AVT   EEGV EE      V GGSPVE+GSTKLYFGNLPYSVDSSQLA I
Sbjct: 68  ISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGI 127

Query: 63  VQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKP 122
           VQ++G+ ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDG+AYMGR+LRVNFSDKP
Sbjct: 128 VQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKP 187

Query: 123 KPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSY 182
           KPKEPLYPETEYKLFVGNLSWSVTSE LTQAFQEYGNVVGARVIY+GETG+SRGYGFVSY
Sbjct: 188 KPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSY 247

Query: 183 ATKSEMETALEAINELELEGRVIRVSLAEGKQAHG 214
           +TK EME ALEA+NE+ELEGRVIRVSLAEGKQA G
Sbjct: 248 STKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG 282

[Close]

BLAST of Chy6G109560 vs. ExPASy TrEMBL
Match: A0A6J1FA65 (28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443680 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.4e-95
Identity = 186/218 (85.32%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 3   ISAAVVQGEAAVTVGVEEGVEEET-------EVEGGSPVESGSTKLYFGNLPYSVDSSQL 62
           ISAAVVQ +AAVT GVEEGV +ET        V+GGSPVESG TKLYFGNLPYSVDSSQL
Sbjct: 68  ISAAVVQRKAAVTFGVEEGVADETAEEGEGQAVDGGSPVESGKTKLYFGNLPYSVDSSQL 127

Query: 63  AAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFS 122
           A IVQDYG+AELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGR+LRVNFS
Sbjct: 128 ADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFS 187

Query: 123 DKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGF 182
           DKPKPK  LYP++EY+L+V NLSWSVTSE L QAFQEYGNVVGARVIYD ETGKSRGYGF
Sbjct: 188 DKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGF 247

Query: 183 VSYATKSEMETALEAINELELEGRVIRVSLAEGKQAHG 214
           VSY+TKSEMETALEA NELELEGRVIRVSLA+GKQA G
Sbjct: 248 VSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 285

[Close]

BLAST of Chy6G109560 vs. NCBI nr
Match: XP_004134038.1 (28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN56810.1 hypothetical protein Csa_010830 [Cucumis sativus])

HSP 1 Score: 402 bits (1034), Expect = 4.20e-140
Identity = 209/213 (98.12%), Postives = 211/213 (99.06%), Query Frame = 0


Query: 1   MIISAAVVQGEAAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQ 60
           MIISAAVVQGE AVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQ
Sbjct: 64  MIISAAVVQGETAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQ 123

Query: 61  DYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKP 120
           DYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDG+AYMGRILRVNFSDKPKP
Sbjct: 124 DYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFSDKPKP 183

Query: 121 KEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYAT 180
           KEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSY+T
Sbjct: 184 KEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYST 243

Query: 181 KSEMETALEAINELELEGRVIRVSLAEGKQAHG 213
           KSEMETALE INELELEGRVIRVSLAEGKQAHG
Sbjct: 244 KSEMETALETINELELEGRVIRVSLAEGKQAHG 276

[Close]

BLAST of Chy6G109560 vs. NCBI nr
Match: XP_016898952.1 (PREDICTED: LOW QUALITY PROTEIN: putative G3BP-like protein [Cucumis melo])

HSP 1 Score: 374 bits (960), Expect = 1.09e-122
Identity = 193/203 (95.07%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MIISAAVVQGEAAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQ 60
           +IISAAVVQGE AV VGVEEGVEEET VEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQ
Sbjct: 64  LIISAAVVQGETAVMVGVEEGVEEETAVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQ 123

Query: 61  DYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKP 120
           D+G+AELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKP
Sbjct: 124 DHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKP 183

Query: 121 KEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYAT 180
           KEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIY+GETGKSRGYGFVSY+T
Sbjct: 184 KEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSRGYGFVSYST 243

Query: 181 KSEMETALEAINELELEGRVIRV 203
           KSEMETALEA+NE+ELEGRVIRV
Sbjct: 244 KSEMETALEALNEVELEGRVIRV 266

[Close]

BLAST of Chy6G109560 vs. NCBI nr
Match: XP_022157973.1 (28 kDa ribonucleoprotein, chloroplastic [Momordica charantia])

HSP 1 Score: 355 bits (910), Expect = 3.94e-121
Identity = 185/215 (86.05%), Postives = 197/215 (91.63%), Query Frame = 0


Query: 3   ISAAVVQGEAAVTVGVEEGVEEET----EVEGGSPVESGSTKLYFGNLPYSVDSSQLAAI 62
           ISAAVVQGE AVT   EEGV EE      V GGSPVE+GSTKLYFGNLPYSVDSSQLA I
Sbjct: 68  ISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGGSPVEAGSTKLYFGNLPYSVDSSQLAGI 127

Query: 63  VQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKP 122
           VQ++G+ ELIEVLYDRNTGKSRGFAFVTMSSIEDCN+VIENLDG+AYMGR+LRVNFSDKP
Sbjct: 128 VQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLRVNFSDKP 187

Query: 123 KPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSY 182
           KPKEPLYPETEYKLFVGNLSWSVTSE LTQAFQEYGNVVGARVIY+GETG+SRGYGFVSY
Sbjct: 188 KPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSY 247

Query: 183 ATKSEMETALEAINELELEGRVIRVSLAEGKQAHG 213
           +TK EME ALEA+NE+ELEGRVIRVSLAEGKQA G
Sbjct: 248 STKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG 282

[Close]

BLAST of Chy6G109560 vs. NCBI nr
Match: XP_022937376.1 (28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 351 bits (901), Expect = 1.02e-119
Identity = 186/218 (85.32%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 3   ISAAVVQGEAAVTVGVEEGVEEETE-------VEGGSPVESGSTKLYFGNLPYSVDSSQL 62
           ISAAVVQ +AAVT GVEEGV +ET        V+GGSPVESG TKLYFGNLPYSVDSSQL
Sbjct: 68  ISAAVVQRKAAVTFGVEEGVADETAEEGEGQAVDGGSPVESGKTKLYFGNLPYSVDSSQL 127

Query: 63  AAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFS 122
           A IVQDYG+AELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGR+LRVNFS
Sbjct: 128 ADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFS 187

Query: 123 DKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGF 182
           DKPKPK  LYP++EY+L+V NLSWSVTSE L QAFQEYGNVVGARVIYD ETGKSRGYGF
Sbjct: 188 DKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGF 247

Query: 183 VSYATKSEMETALEAINELELEGRVIRVSLAEGKQAHG 213
           VSY+TKSEMETALEA NELELEGRVIRVSLA+GKQA G
Sbjct: 248 VSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 285

[Close]

BLAST of Chy6G109560 vs. NCBI nr
Match: XP_023539751.1 (28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 351 bits (901), Expect = 1.13e-119
Identity = 186/218 (85.32%), Postives = 197/218 (90.37%), Query Frame = 0


Query: 3   ISAAVVQGEAAVTVGVEEGVEEETE-------VEGGSPVESGSTKLYFGNLPYSVDSSQL 62
           ISAAVVQ +AAVT GVEEGV +ET        V+GGSPVESG TKLYFGNLPYSVDSSQL
Sbjct: 71  ISAAVVQRKAAVTFGVEEGVADETAEEGEGQVVDGGSPVESGKTKLYFGNLPYSVDSSQL 130

Query: 63  AAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFS 122
           A IVQDYG+AELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGR+LRVNFS
Sbjct: 131 ADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFS 190

Query: 123 DKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGF 182
           DKPKPK  LYP++EY+L+V NLSWSVTSE L QAFQEYGNVVGARVIYD ETGKSRGYGF
Sbjct: 191 DKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGF 250

Query: 183 VSYATKSEMETALEAINELELEGRVIRVSLAEGKQAHG 213
           VSY+TKSEMETALEA NELELEGRVIRVSLA+GKQA G
Sbjct: 251 VSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 288

[Close]

BLAST of Chy6G109560 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 267.7 bits (683), Expect = 8.0e-72
Identity = 130/194 (67.01%), Postives = 167/194 (86.08%), Query Frame = 0


Query: 22  VEEETEVEGGS----PVESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTG 81
           +EEE + +G S    P  + +TKLYFGNLPY+VDS+ LA I+QD+   EL+EVLY+R+TG
Sbjct: 64  LEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTG 123

Query: 82  KSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKP-KEPLYPETEYKLFVGN 141
           +SRGFAFVTMS++EDCN +I+NLDGT Y+GR L+VNF+DKPKP KEPLYPETE+KLFVGN
Sbjct: 124 QSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGN 183

Query: 142 LSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYATKSEMETALEAINELEL 201
           LSW+VTSE L  AF+E G+VVGARV++DG+TG+SRGYGFV Y++K+EMETALE+++  EL
Sbjct: 184 LSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFEL 243

Query: 202 EGRVIRVSLAEGKQ 211
           EGR IRV+LA+GK+
Sbjct: 244 EGRAIRVNLAQGKK 257

[Close]

BLAST of Chy6G109560 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-37
Identity = 83/197 (42.13%), Postives = 123/197 (62.44%), Query Frame = 0


Query: 15  TVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDR 74
           +V V+E  E E  V  G P      KL+ GNLPY VDS  LA + +  G  E+ EV+Y+R
Sbjct: 91  SVTVDESFESEDGV--GFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNR 150

Query: 75  NTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFS----DKPKPKEPLYPETEY 134
           +T +SRGF FVTMS++E+  K +E  +     GR L VN +     +P+ ++P   +  +
Sbjct: 151 DTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPE-RQPRVYDAAF 210

Query: 135 KLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYATKSEMETALEA 194
           +++VGNL W V S  L + F E+G VV ARV+ D ETG+SRG+GFV  + ++E+  A+ A
Sbjct: 211 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 270

Query: 195 INELELEGRVIRVSLAE 208
           ++   LEGR I+V++AE
Sbjct: 271 LDGQNLEGRAIKVNVAE 284

[Close]

BLAST of Chy6G109560 vs. TAIR 10
Match: AT4G24770.1 (31-kDa RNA binding protein )

HSP 1 Score: 151.4 bits (381), Expect = 8.4e-37
Identity = 84/201 (41.79%), Postives = 121/201 (60.20%), Query Frame = 0


Query: 18  VEEGVEEETEVEGGS-------PVESGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEV 77
           V EG E E +V  G+       P  S   KL+ GNL Y V+S  LA + +  G  E+ EV
Sbjct: 122 VSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEV 181

Query: 78  LYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFS----DKPKPKEPLYP 137
           +Y+R T +SRGF FVTMSS+++    +E  +     GR+L VN +     +P+ + P   
Sbjct: 182 IYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPE-RAPRVY 241

Query: 138 ETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYATKSEMET 197
           E  ++++VGNL W V +  L Q F E+G VV ARV+YD ETG+SRG+GFV+ +   E+  
Sbjct: 242 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 301

Query: 198 ALEAINELELEGRVIRVSLAE 208
           A+ A++   LEGR IRV++AE
Sbjct: 302 AISALDGQNLEGRAIRVNVAE 321

[Close]

BLAST of Chy6G109560 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 150.2 bits (378), Expect = 1.9e-36
Identity = 85/221 (38.46%), Postives = 127/221 (57.47%), Query Frame = 0


Query: 14  VTVGVEEGVEEETEVEGGSPVE---SGSTKLYFGNLPYSVDSSQLAAIVQDYGIAELIEV 73
           V +  E  VEE+   +   P E   S   KL+ GNLP++VDS+QLA + +  G  E++EV
Sbjct: 63  VAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEV 122

Query: 74  LYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKPKEPLY---PE 133
           +YD+ TG+SRGF FVTMSS+ +     +  +G    GR LRVN    P  +E  +   P 
Sbjct: 123 IYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPR 182

Query: 134 TEY-------------------KLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETG 193
           + +                   +++VGNLSW V    L   F E G VV ARVIYD ++G
Sbjct: 183 SSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSG 242

Query: 194 KSRGYGFVSYATKSEMETALEAINELELEGRVIRVSLAEGK 210
           +S+G+GFV+Y +  E++ A+++++  +L+GR IRVS AE +
Sbjct: 243 RSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283

[Close]

BLAST of Chy6G109560 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 147.9 bits (372), Expect = 9.3e-36
Identity = 77/217 (35.48%), Postives = 131/217 (60.37%), Query Frame = 0


Query: 6   AVVQGEAAVTVGVEEGVEEETEVEGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGIA 65
           A V+ E  V    +EG EE  E +  +       +LY GNLPY++ SS+L+ I  + G  
Sbjct: 83  ASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTV 142

Query: 66  ELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKPKE--- 125
             ++++YD+ T +SRGF FVTM SIE+  + ++  + +   GR ++VNF + P+  E   
Sbjct: 143 VDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEV 202

Query: 126 ---------PLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGY 185
                      Y ++ +K++ GNL W++TS+ L  AF +   V+GA+VIY+  TG+SRG+
Sbjct: 203 MRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGF 262

Query: 186 GFVSYATKSEMETALEAINELELEGRVIRVSLAEGKQ 211
           GF+S+ +   +++AL  +N +E+EGR +R++LA  ++
Sbjct: 263 GFISFESAENVQSALATMNGVEVEGRALRLNLASERE 299

The following BLAST results are available for this feature:

BLAST of Chy6G109560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P28644	3.3e-38	43.40	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]
P19684	3.3e-38	40.28	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19683	7.4e-38	42.65	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q9FGS0	1.8e-36	42.13	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31...	[more]
Q08935	5.3e-36	39.80	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]

BLAST of Chy6G109560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L496	6.8e-111	98.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134590 PE=4 SV=1	[more]
A0A1S4DSH7	4.4e-102	95.07	LOW QUALITY PROTEIN: putative G3BP-like protein OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3CZH4	6.6e-98	95.36	Putative G3BP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A6J1DUT6	2.1e-96	86.05	28 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1FA65	2.4e-95	85.32	28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Chy6G109560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134038.1	4.20e-140	98.12	28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN56810.1 hypothetic...	[more]
XP_016898952.1	1.09e-122	95.07	PREDICTED: LOW QUALITY PROTEIN: putative G3BP-like protein [Cucumis melo]	[more]
XP_022157973.1	3.94e-121	86.05	28 kDa ribonucleoprotein, chloroplastic [Momordica charantia]	[more]
XP_022937376.1	1.02e-119	85.32	28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata]	[more]
XP_023539751.1	1.13e-119	85.32	28 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Chy6G109560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60000.1	8.0e-72	67.01	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G50250.1	1.3e-37	42.13	chloroplast RNA-binding protein 31B	[more]
AT4G24770.1	8.4e-37	41.79	31-kDa RNA binding protein	[more]
AT2G37220.1	1.9e-36	38.46	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	9.3e-36	35.48	chloroplast RNA-binding protein 33	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 40..113 e-value: 3.7E-21 score: 86.3 coord: 131..204 e-value: 8.0E-27 score: 105.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 41..110 e-value: 3.6E-15 score: 55.5 coord: 132..202 e-value: 7.3E-21 score: 73.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 130..208 score: 19.791824
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 39..117 score: 17.284681
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 120..213 e-value: 3.3E-28 score: 100.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 11..119 e-value: 2.0E-24 score: 88.3
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 25..78
None	No IPR available	PANTHER	PTHR15241:SF321	31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 25..78
None	No IPR available	PANTHER	PTHR15241:SF321	31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 75..115
None	No IPR available	PANTHER	PTHR15241:SF321	31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 122..210
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 122..210 coord: 75..115
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 125..210
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 33..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G109560.1	Chy6G109560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding