Chy6G109150 (gene) Cucumber (hystrix) v1

Overview


Name	Chy6G109150
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH06: 2606832 .. 2607620 (-)
RNA-Seq Expression	Chy6G109150
Synteny	Chy6G109150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAACGAGGAAGAAAAAGGAAGTGCAAGTGCAAGTTCCTCCTTTTCTGGCTCACATGGCGACTTTCCATTTTCGACATTCTGTCTTCTTCTGACTTCGTATTACCCTTCTCTGTGTTCTTCTTATCTAATAAACTTCCACTTCTCAAAGGTAAAAAACCAATACACATAAAACCCTTTTACATCAATTTCTTTATTCTATGATGATGATGATGATGATACGATATTCGATTTCATTTTGATTTGATTTGATTTTTGAATGCGCCTCTCTCTTTGACAAAAACCCTTCCAAAATCCCCTTCAATTACAACTCTTTTTCTCTCTTCTTTTAGATCTCGCTGTTCCTATTTCTTGTTTGTCTGCCTACCAAACGCTTGTTTGTGAAACCCCTTTTCTTCTCTATTGTATCCTCTTTTTGATACAAACGTTATTTGTTGGGTTTTGCCCTTTGCTTGGATGGTGGGGTTTTCCTGCTTTTTTTTTTTCTTTCTTGTATTCTTTTCTTGATTCCTTTAACATATTTTTATCCGTTTCTTTACAGATTCTACTGCTCTTGATTGTATTTCTTTAATTTATAATTCGTGCTTCACGCACCCACATGCATGTTTTTGGGTTTGTCTGATCTGGATTGGATCACAAGGATCTTATGTTCTTTTTCTACTTGCAGAGAGAGATAGAGAGAGAGTAAGAGGGTGGGGTTTAGGCTCTTTTCCTGCAATCTTGGTCTCTAGAGAGAGGGAGTCATGGAAGAAGCAAACAGGAGGAGGAGAAGGTAAGTTTTCTTGA

mRNA sequence

ATGGGGAAACGAGGAAGAAAAAGGAAGTGCAAGTGCAAGTTCCTCCTTTTCTGGCTCACATGGCGACTTTCCATTTTCGACATTCTGTCTTCTTCTGACTTCGTATTACCCTTCTCTGTGTTCTTCTTATCTAATAAACTTCCACTTCTCAAAGAGAGAGATAGAGAGAGAGTAAGAGGGTGGGGTTTAGGCTCTTTTCCTGCAATCTTGGTCTCTAGAGAGAGGGAGTCATGGAAGAAGCAAACAGGAGGAGGAGAAGGTAAGTTTTCTTGA

Coding sequence (CDS)

ATGGGGAAACGAGGAAGAAAAAGGAAGTGCAAGTGCAAGTTCCTCCTTTTCTGGCTCACATGGCGACTTTCCATTTTCGACATTCTGTCTTCTTCTGACTTCGTATTACCCTTCTCTGTGTTCTTCTTATCTAATAAACTTCCACTTCTCAAAGAGAGAGATAGAGAGAGAGTAAGAGGGTGGGGTTTAGGCTCTTTTCCTGCAATCTTGGTCTCTAGAGAGAGGGAGTCATGGAAGAAGCAAACAGGAGGAGGAGAAGGTAAGTTTTCTTGA

Protein sequence

MGKRGRKRKCKCKFLLFWLTWRLSIFDILSSSDFVLPFSVFFLSNKLPLLKERDRERVRGWGLGSFPAILVSRERESWKKQTGGGEGKFS*

Homology

[Close]

BLAST of Chy6G109150 vs. ExPASy TrEMBL
Match: A0A0A0L4R3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G132600 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.9e-39
Identity = 83/90 (92.22%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MGKRGRKRKCKCKFLLFWLTWRLSIFDILSSSDFVLPFSVFFLSNKLPLLKERDRERVRG 60
          MGKRGRKRK KCKFLLFWLTWRLSIFDILSSSDFVLPFSVFFLSNKLPLL+ER  ER RG
Sbjct: 1  MGKRGRKRKWKCKFLLFWLTWRLSIFDILSSSDFVLPFSVFFLSNKLPLLEERGIERERG 60

Query: 61 WGLGSFPAILVSRERESWKKQTGGGEGKFS 91
          WGLGSFPAILVSRER SWKKQTGGG GKFS
Sbjct: 61 WGLGSFPAILVSRERVSWKKQTGGGGGKFS 90

[Close]

BLAST of Chy6G109150 vs. NCBI nr
Match: KGN56758.1 (hypothetical protein Csa_009575 [Cucumis sativus])

HSP 1 Score: 169 bits (429), Expect = 8.21e-53
Identity = 83/90 (92.22%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MGKRGRKRKCKCKFLLFWLTWRLSIFDILSSSDFVLPFSVFFLSNKLPLLKERDRERVRG 60
          MGKRGRKRK KCKFLLFWLTWRLSIFDILSSSDFVLPFSVFFLSNKLPLL+ER  ER RG
Sbjct: 1  MGKRGRKRKWKCKFLLFWLTWRLSIFDILSSSDFVLPFSVFFLSNKLPLLEERGIERERG 60

Query: 61 WGLGSFPAILVSRERESWKKQTGGGEGKFS 90
          WGLGSFPAILVSRER SWKKQTGGG GKFS
Sbjct: 61 WGLGSFPAILVSRERVSWKKQTGGGGGKFS 90

[Close]

BLAST of Chy6G109150 vs. NCBI nr
Match: KAG7028774.1 (hypothetical protein SDJN02_09955, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 48.9 bits (115), Expect = 1.66e-04
Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 15 LLFWLTWRLSIFDILSSSDFVLPFSVFFLSNKLPLLKE---RDRERVRGWGLGSFPAIL 70
          LL WLTWRLSI D LSSSDF+L  S+ FLS+K     E   R+R+RV   GLGSF   L
Sbjct: 13 LLLWLTWRLSIMDNLSSSDFLLDSSL-FLSDKGFQFAEIILRERKRV---GLGSFSPNL 67

The following BLAST results are available for this feature:

BLAST of Chy6G109150 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G109150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4R3	3.9e-39	92.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G132600 PE=4 SV=1	[more]

BLAST of Chy6G109150 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56758.1	8.21e-53	92.22	hypothetical protein Csa_009575 [Cucumis sativus]	[more]
KAG7028774.1	1.66e-04	57.63	hypothetical protein SDJN02_09955, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Chy6G109150 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy6G109150.1	Chy6G109150.1	mRNA