Chy6G108620 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCCACTTCTAGGGATCCAACTCCGCCGTACGCCAGTGCTGCTAGAATTTCCGATTCTCCTTGCTATCCTCAGTACAGCGCTTCCCTCAAATGTACTTTCACTCTCATACTCCCTCTCCGTTATTCTCATTTTTTTTTTGTTTTTCTATAATTCTCCGCCAGAAATTTAGGCATCTGTGCTCCACTTATCTCACCATTTGATTTTGGACCTGTTCTACACTGCTTCATTTGAGATTGATTGCGTGCTGTGCATCAATTGTTTTCAGCTTGTGTTTTTTATGGTTAAACTCGCGAATTAGTGGTTGGCGATGATCGTGCGAATTCTAATTTTTGTGGCGATTCTCTGTGCTCTGTTACTTGAAAATTGGCTAGCCTGTTTGATTACTTTTCTAGGGTTTTATTTCCATCCAGTTTAGGTTAATTGATGAAGAGTAAGCGAACTTAAATAAATGTATTAGTGATCGTATGATAATCTTAAAAACAAAATAGGATTTACCTGGGTATTGGTTGATAAAACGCTCGTCGGAGTTCTTAGAGTGGCTGTGTTTTGAGTCCACTTACTGTTCTAACTAATAACTATGGAAATGGTGAAAAAGGAACTTTTACTAGGATTTTGGAGCCGAATGATCATTATCCCTCTTTCCTGGGGGCCAAGTGTCAGAGTAGGAATTACTAAGGTGGATGGTTCATTCTTCTACTCCAAAACTAATTAGTTGTCAATCCGATCCAATTTCATTATTTGGCTTATTCTTTGAGTTATATTTATAAGAGGGTTTTAACTTTCTGGATATCCCCCTGTGTATTTGTTTGATTTAGGATAACGGATTACATATAACGCATAACCCCACATATGGGCAGAATAATTTTTAAAAAGATGTTTAATGCGGAAGCCTCGAGCTGGAACTTAAGGCAAGGATAAAGGTCATATACAAATTGTTCATAGGAAGCATGCGTTTGTAATAGATGTTAAGTCATGTGCAGAGTGAACTTGTAATTTGAATTTTTAAATGAGGACTATCGTTATTGATTTCGTTAAAGTGCAGCTTATTTTTGGTGTTCCATGAACCATCCAATGAGAAGTTTGTGCTTAGATTACTAATTTTTGTAGATTTGGAATTTTATTTTTATGTCAGAGAACATTTTGAACTTCTTATCCGAGAAAATATCTTTTTCCAAATGTTGTAGGTCTTGAAGTACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGTATTTTCTACTCTTATTTATCACATGAAATTGGAATGGTGGAACATTTTGTAACGTGTGGCATTGTTACTGAAAAACATATGCTCACTATTTATGGGAATTTGGTTTCTGAGATGATGGTACTTACTAACCAAGGTTGTAATTGCAAATGAGCACATCCCAAAGAGGCATCAAAATGTTAAAATATGATCTTGGTCTTCAGTAAAGTTATATTTTGATCTTTTAAGTTTTAGTAATTTCTATGTCACATATTCTATCATAGTTACATTCTGTAACAAAAAAGTGACTACTCATTTTGTGATATCAGATTTATATGCAAGTGATGTATATTGTCTCTTCCAAGTGAAAACCTCTTATTAATCATACATTGATTGGCAACACAATAAAATACCATATTGATGGTAGATTGGATTTGAAGTTATTGAAGCTTGCGGGTCTAAAATAAAAACTTTTTGCAAATTTGGGATTAAAATTACTCTATGACCTGAAAGATACTATGGCATATAAGATGAGAAATATTATTGTGATTCATGATACTATAGAAACTTTAGAACCCTCTGCCTATGTTCCATAACATTTACTTCCTTGGTTGGTGTAGTAGAGTAGCATAACTCACCAATTCTTGATCAGATATTGTCTCTGTTTATGAAGTTTCTAACTCGAACAAGATTTGTCTTCTTTCCAGCGGGAAGCTCGATTGGAACGCAACAAGACGCGGTCTTTCTTCTCATGA ATGGCTTCCACTTCTAGGGATCCAACTCCGCCGTACGCCAGTGCTGCTAGAATTTCCGATTCTCCTTGCTATCCTCAGTACAGCGCTTCCCTCAAATGTCTTGAAGTACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGCGGGAAGCTCGATTGGAACGCAACAAGACGCGGTCTTTCTTCTCATGA ATGGCTTCCACTTCTAGGGATCCAACTCCGCCGTACGCCAGTGCTGCTAGAATTTCCGATTCTCCTTGCTATCCTCAGTACAGCGCTTCCCTCAAATGTCTTGAAGTACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGCGGGAAGCTCGATTGGAACGCAACAAGACGCGGTCTTTCTTCTCATGA MASTSRDPTPPYASAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLERNKTRSFFS* Homology
BLAST of Chy6G108620 vs. ExPASy Swiss-Prot
Match: Q6FQX5 (Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=COX23 PE=3 SV=1) HSP 1 Score: 43.9 bits (102), Expect = 9.2e-04 Identity = 19/41 (46.34%), Postives = 28/41 (68.29%), Query Frame = 0
BLAST of Chy6G108620 vs. ExPASy TrEMBL
Match: A0A0A0L4K5 (CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G129550 PE=4 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 1.8e-31 Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 0
BLAST of Chy6G108620 vs. ExPASy TrEMBL
Match: A0A5A7U004 (Cytochrome c oxidase-assembly factor COX23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003050 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30 Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0
BLAST of Chy6G108620 vs. ExPASy TrEMBL
Match: A0A6J1E9H8 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111432060 PE=4 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 8.6e-29 Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 0
BLAST of Chy6G108620 vs. ExPASy TrEMBL
Match: A0A6J1D157 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016071 PE=4 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 4.3e-28 Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 0
BLAST of Chy6G108620 vs. ExPASy TrEMBL
Match: A0A6J1ITM4 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111479820 PE=4 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 2.1e-27 Identity = 66/73 (90.41%), Postives = 68/73 (93.15%), Query Frame = 0
BLAST of Chy6G108620 vs. NCBI nr
Match: XP_004133972.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus] >KGN56698.1 hypothetical protein Csa_009870 [Cucumis sativus]) HSP 1 Score: 144 bits (363), Expect = 2.89e-43 Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 0
BLAST of Chy6G108620 vs. NCBI nr
Match: KAA0049122.1 (cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa] >TYK17441.1 cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa]) HSP 1 Score: 141 bits (356), Expect = 3.38e-42 Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0
BLAST of Chy6G108620 vs. NCBI nr
Match: XP_038906947.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Benincasa hispida]) HSP 1 Score: 136 bits (342), Expect = 4.63e-40 Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 0
BLAST of Chy6G108620 vs. NCBI nr
Match: XP_022924627.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita moschata] >KAG6582500.1 hypothetical protein SDJN03_22502, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018885.1 hypothetical protein SDJN02_20758 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 135 bits (340), Expect = 9.35e-40 Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 0
BLAST of Chy6G108620 vs. NCBI nr
Match: XP_022147041.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Momordica charantia]) HSP 1 Score: 133 bits (334), Expect = 7.70e-39 Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 0
BLAST of Chy6G108620 vs. TAIR 10
Match: AT1G02160.1 (Cox19 family protein (CHCH motif) ) HSP 1 Score: 107.8 bits (268), Expect = 3.7e-24 Identity = 54/62 (87.10%), Postives = 56/62 (90.32%), Query Frame = 0
BLAST of Chy6G108620 vs. TAIR 10
Match: AT1G02160.2 (Cox19 family protein (CHCH motif) ) HSP 1 Score: 82.4 bits (202), Expect = 1.7e-16 Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
|