Chy6G107890 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGTCTGGATTCAACAATGGCATAAGGGTTTTCAGAGCCTGTAGAGCTCTCTTAGCTCCGTCCAAATCCTCTGCTACCGTTCCCGCCACCGCTCCCAAATCCAAGACGACCTCGAAGCCGCCCAAGGTGAAGACTCCTCCGAGCTCCGTTGTTGCTGGTGTTGCATCCACGCCCGAGCCGAAAATAAAAAAGGAAATGTCTCGACCGTCGGGGATTCTGAAGGTCACTCAGGTTTCTCCAGCGTTGCAACTTCTTGGGTGTATCGGAGGCTTCTCGCAGCGATGCCGTCACGCAGATCTGGTCTTACATAAAGCTCCACAACCTTCAGGTTTGTAGCTTATAACCATTTTGGTTTCTAGGCCATTGGGTGGAAAAATGGACGTGCAAATAGGCTGTAATGCACCTCCAACTTCCAATCCAGAAATTGCATCAACTAACAGACACTAGTTAACCTTTAAACTGAAATCTACGGTTTCTCTCCCCGCCGCAATGGGGGTCGTTTAGTTTTTCCGATGAGGAAAGGTTTAGTAATCTGAAGGAAAATGGAGTATGGAGGTTTCATCCGTAACTGGTGCTCCCGATGCTTATTATTGCTGAGGTTGAGGAACCAGTTTTCTCCATGATCCAGGTAGATGCAAAGCCATCTGA ATGTCGTCTGGATTCAACAATGGCATAAGGGTTTTCAGAGCCTGTAGAGCTCTCTTAGCTCCGTCCAAATCCTCTGCTACCGTTCCCGCCACCGCTCCCAAATCCAAGACGACCTCGAAGCCGCCCAAGGTGAAGACTCCTCCGAGCTCCGTTGTTGCTGGTGTTGCATCCACGCCCGAGCCGAAAATAAAAAAGGAAATGTCTCGACCGTCGGGGATTCTGAAGGTCACTCAGGTTTCTCCAGCGTTGCAACTTCTTGGGTGTATCGGAGGCTTCTCGCAGCGATGCCGTCACGCAGATCTGGTCTTACATAAAGCTCCACAACCTTCAGGTAGATGCAAAGCCATCTGA ATGTCGTCTGGATTCAACAATGGCATAAGGGTTTTCAGAGCCTGTAGAGCTCTCTTAGCTCCGTCCAAATCCTCTGCTACCGTTCCCGCCACCGCTCCCAAATCCAAGACGACCTCGAAGCCGCCCAAGGTGAAGACTCCTCCGAGCTCCGTTGTTGCTGGTGTTGCATCCACGCCCGAGCCGAAAATAAAAAAGGAAATGTCTCGACCGTCGGGGATTCTGAAGGTCACTCAGGTTTCTCCAGCGTTGCAACTTCTTGGGTGTATCGGAGGCTTCTCGCAGCGATGCCGTCACGCAGATCTGGTCTTACATAAAGCTCCACAACCTTCAGGTAGATGCAAAGCCATCTGA MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKPPKVKTPPSSVVAGVASTPEPKIKKEMSRPSGILKVTQVSPALQLLGCIGGFSQRCRHADLVLHKAPQPSGRCKAI* Homology
BLAST of Chy6G107890 vs. ExPASy TrEMBL
Match: A0A0A0L3V0 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126840 PE=4 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 5.5e-30 Identity = 80/89 (89.89%), Postives = 81/89 (91.01%), Query Frame = 0
BLAST of Chy6G107890 vs. ExPASy TrEMBL
Match: A0A1S3AVG6 (upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC103483375 PE=4 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 2.0e-27 Identity = 76/88 (86.36%), Postives = 79/88 (89.77%), Query Frame = 0
BLAST of Chy6G107890 vs. ExPASy TrEMBL
Match: A0A6J1IWB1 (protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111479808 PE=4 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 2.2e-18 Identity = 61/86 (70.93%), Postives = 69/86 (80.23%), Query Frame = 0
BLAST of Chy6G107890 vs. ExPASy TrEMBL
Match: A0A6J1EDA2 (upstream activation factor subunit spp27-like OS=Cucurbita moschata OX=3662 GN=LOC111432134 PE=4 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 4.1e-17 Identity = 59/86 (68.60%), Postives = 68/86 (79.07%), Query Frame = 0
BLAST of Chy6G107890 vs. ExPASy TrEMBL
Match: A0A6J1D0R8 (upstream activation factor subunit spp27-like OS=Momordica charantia OX=3673 GN=LOC111015988 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16 Identity = 61/87 (70.11%), Postives = 68/87 (78.16%), Query Frame = 0
BLAST of Chy6G107890 vs. NCBI nr
Match: XP_004133931.1 (upstream activation factor subunit spp27 [Cucumis sativus] >KGN56620.1 hypothetical protein Csa_011434 [Cucumis sativus]) HSP 1 Score: 138 bits (348), Expect = 4.00e-39 Identity = 80/89 (89.89%), Postives = 81/89 (91.01%), Query Frame = 0
BLAST of Chy6G107890 vs. NCBI nr
Match: XP_008438197.1 (PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo] >XP_008438198.1 PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo]) HSP 1 Score: 130 bits (326), Expect = 8.47e-36 Identity = 76/88 (86.36%), Postives = 79/88 (89.77%), Query Frame = 0
BLAST of Chy6G107890 vs. NCBI nr
Match: XP_038877222.1 (upstream activation factor subunit UAF30 [Benincasa hispida] >XP_038877226.1 upstream activation factor subunit UAF30 [Benincasa hispida]) HSP 1 Score: 116 bits (290), Expect = 2.29e-30 Identity = 67/86 (77.91%), Postives = 76/86 (88.37%), Query Frame = 0
BLAST of Chy6G107890 vs. NCBI nr
Match: XP_022980440.1 (protein TRI1-like [Cucurbita maxima]) HSP 1 Score: 100 bits (249), Expect = 3.54e-24 Identity = 61/86 (70.93%), Postives = 69/86 (80.23%), Query Frame = 0
BLAST of Chy6G107890 vs. NCBI nr
Match: XP_022924718.1 (upstream activation factor subunit spp27-like [Cucurbita moschata]) HSP 1 Score: 96.7 bits (239), Expect = 1.14e-22 Identity = 69/123 (56.10%), Postives = 80/123 (65.04%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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