Chy5G102930 (gene) Cucumber (hystrix) v1

Overview


Name	Chy5G102930
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	RING-type domain-containing protein
Location	chrH05: 16873121 .. 16873509 (-)
RNA-Seq Expression	Chy5G102930
Synteny	Chy5G102930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGAATGTTACCCGGAGTTGAATGTGCTAGAAGGAGGCGGTTCCACCAGAGCATAAACTCATCGGACTCGCCGTACACGGCGGGGAAATCAGGATCTACAAGAAGACCATCGTTCTGTTTGTACACAAGCAACCGCGATTTTCATCTAATTTCATCATCTTCGTCACAGGTTATTATCAATAAAAATCTAAAAAATTTCCCTCTAATCTTTTTTGTTCCTTGGGGAAAATCTGATGAGTTGTTTGTTTGAAATTTGAAATTAAGCAACGGAGCTCGACGAATCAAGCTCATCAGAACGAGAAACTTGGTGAAATTGCAAGAGAAGCTAAGGAACGGTTAGATGAGAGGTTGAGGACTCACCGAAAACCTGAAAATTCAAGGTGA

mRNA sequence

ATGGCCGGAATGTTACCCGGAGTTGAATGTGCTAGAAGGAGGCGGTTCCACCAGAGCATAAACTCATCGGACTCGCCGTACACGGCGGGGAAATCAGGATCTACAAGAAGACCATCGTTCTGTTTGTACACAAGCAACCGCGATTTTCATCTAATTTCATCATCTTCGTCACAGCAACGGAGCTCGACGAATCAAGCTCATCAGAACGAGAAACTTGGTGAAATTGCAAGAGAAGCTAAGGAACGGTTAGATGAGAGGTTGAGGACTCACCGAAAACCTGAAAATTCAAGGTGA

Coding sequence (CDS)

ATGGCCGGAATGTTACCCGGAGTTGAATGTGCTAGAAGGAGGCGGTTCCACCAGAGCATAAACTCATCGGACTCGCCGTACACGGCGGGGAAATCAGGATCTACAAGAAGACCATCGTTCTGTTTGTACACAAGCAACCGCGATTTTCATCTAATTTCATCATCTTCGTCACAGCAACGGAGCTCGACGAATCAAGCTCATCAGAACGAGAAACTTGGTGAAATTGCAAGAGAAGCTAAGGAACGGTTAGATGAGAGGTTGAGGACTCACCGAAAACCTGAAAATTCAAGGTGA

Protein sequence

MAGMLPGVECARRRRFHQSINSSDSPYTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQRSSTNQAHQNEKLGEIAREAKERLDERLRTHRKPENSR*

Homology

[Close]

BLAST of Chy5G102930 vs. ExPASy TrEMBL
Match: A0A0A0LG47 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009360 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.4e-42
Identity = 93/97 (95.88%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MAGMLPGVECARRRRFHQSINSSDSPYTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60
          MAGMLPGVECARRRRFHQSINSSDSP+TAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR
Sbjct: 1  MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61 SSTNQAHQNEKLGEIAREAKERLDERLRTHRKPENSR 98
          S TNQA+QN+KLGEIAREAKERLDERLRTHRKPENSR
Sbjct: 61 SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSR 97

[Close]

BLAST of Chy5G102930 vs. ExPASy TrEMBL
Match: A0A5A7V635 (RING-H2 finger protein ATL16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00940 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.6e-41
Identity = 92/97 (94.85%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MAGMLPGVECARRRRFHQSINSSDSPYTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60
          MAGMLPGVECARRRRFH SINSSDSP TA KSGSTRRPSFCLYTSNRDFHLISSSSSQQR
Sbjct: 1  MAGMLPGVECARRRRFHHSINSSDSPSTAAKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61 SSTNQAHQNEKLGEIAREAKERLDERLRTHRKPENSR 98
          S TN+AHQNEKLGEIAREAKERLDERLRTHRKPENSR
Sbjct: 61 SLTNKAHQNEKLGEIAREAKERLDERLRTHRKPENSR 97

[Close]

BLAST of Chy5G102930 vs. ExPASy TrEMBL
Match: A0A1S3C563 (RING-H2 finger protein ATL16 OS=Cucumis melo OX=3656 GN=LOC103496570 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.6e-41
Identity = 92/97 (94.85%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MAGMLPGVECARRRRFHQSINSSDSPYTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60
          MAGMLPGVECARRRRFH SINSSDSP TA KSGSTRRPSFCLYTSNRDFHLISSSSSQQR
Sbjct: 1  MAGMLPGVECARRRRFHHSINSSDSPSTAAKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61 SSTNQAHQNEKLGEIAREAKERLDERLRTHRKPENSR 98
          S TN+AHQNEKLGEIAREAKERLDERLRTHRKPENSR
Sbjct: 61 SLTNKAHQNEKLGEIAREAKERLDERLRTHRKPENSR 97

[Close]

BLAST of Chy5G102930 vs. ExPASy TrEMBL
Match: A0A6J1G4D6 (probable E3 ubiquitin-protein ligase RHY1A OS=Cucurbita moschata OX=3662 GN=LOC111450678 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 8.7e-37
Identity = 86/98 (87.76%), Postives = 91/98 (92.86%), Query Frame = 0


Query: 1  MAGMLPGVECARRRRFHQSINSSDSPYTAGKSGSTRRPSFCLYTSNRDFHLISSSS-SQQ 60
          MAGMLPGVECARRRRFHQSI SSD+P TA K GSTRRPSFCLYTSNRDFH+ SSSS SQQ
Sbjct: 1  MAGMLPGVECARRRRFHQSITSSDTPSTAAKLGSTRRPSFCLYTSNRDFHITSSSSCSQQ 60

Query: 61 RSSTNQAHQNEKLGEIAREAKERLDERLRTHRKPENSR 98
          RSS++QA+QNEKLGEIAREAKERLDERLRTHRKPEN R
Sbjct: 61 RSSSHQAYQNEKLGEIAREAKERLDERLRTHRKPENPR 98

[Close]

BLAST of Chy5G102930 vs. ExPASy TrEMBL
Match: A0A6J1KK21 (probable E3 ubiquitin-protein ligase RHY1A OS=Cucurbita maxima OX=3661 GN=LOC111493891 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 84/100 (84.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 1   MAGMLPGVECARRRRFHQSINSSDSPYTAGKSGSTRRPSFCLYTSNRDFHLISSSS---S 60
           MAGMLPGVECARRRRFHQSI SSDSP TA K GSTRRPSFCLYTSNRDFH+ SSSS   S
Sbjct: 1   MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHITSSSSSSRS 60

Query: 61  QQRSSTNQAHQNEKLGEIAREAKERLDERLRTHRKPENSR 98
           QQRSS+NQA+Q EKLGEIAREAKERLDERL++HRKP+N R
Sbjct: 61  QQRSSSNQAYQTEKLGEIAREAKERLDERLKSHRKPQNPR 100

[Close]

BLAST of Chy5G102930 vs. NCBI nr
Match: XP_004139268.1 (probable E3 ubiquitin-protein ligase RHY1A [Cucumis sativus] >KGN60748.1 hypothetical protein Csa_019469 [Cucumis sativus])

HSP 1 Score: 182 bits (461), Expect = 4.85e-56
Identity = 93/97 (95.88%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MAGMLPGVECARRRRFHQSINSSDSPYTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60
          MAGMLPGVECARRRRFHQSINSSDSP+TAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR
Sbjct: 1  MAGMLPGVECARRRRFHQSINSSDSPFTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61 SSTNQAHQNEKLGEIAREAKERLDERLRTHRKPENSR 97
          S TNQA+QN+KLGEIAREAKERLDERLRTHRKPENSR
Sbjct: 61 SLTNQAYQNDKLGEIAREAKERLDERLRTHRKPENSR 97

[Close]

BLAST of Chy5G102930 vs. NCBI nr
Match: KAA0063553.1 (RING-H2 finger protein ATL16 [Cucumis melo var. makuwa] >TYJ97880.1 RING-H2 finger protein ATL16 [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (450), Expect = 8.51e-56
Identity = 92/97 (94.85%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MAGMLPGVECARRRRFHQSINSSDSPYTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60
          MAGMLPGVECARRRRFH SINSSDSP TA KSGSTRRPSFCLYTSNRDFHLISSSSSQQR
Sbjct: 1  MAGMLPGVECARRRRFHHSINSSDSPSTAAKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61 SSTNQAHQNEKLGEIAREAKERLDERLRTHRKPENSR 97
          S TN+AHQNEKLGEIAREAKERLDERLRTHRKPENSR
Sbjct: 61 SLTNKAHQNEKLGEIAREAKERLDERLRTHRKPENSR 97

[Close]

BLAST of Chy5G102930 vs. NCBI nr
Match: XP_008456709.1 (PREDICTED: RING-H2 finger protein ATL16 [Cucumis melo])

HSP 1 Score: 177 bits (450), Expect = 2.01e-54
Identity = 92/97 (94.85%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MAGMLPGVECARRRRFHQSINSSDSPYTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60
          MAGMLPGVECARRRRFH SINSSDSP TA KSGSTRRPSFCLYTSNRDFHLISSSSSQQR
Sbjct: 1  MAGMLPGVECARRRRFHHSINSSDSPSTAAKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60

Query: 61 SSTNQAHQNEKLGEIAREAKERLDERLRTHRKPENSR 97
          S TN+AHQNEKLGEIAREAKERLDERLRTHRKPENSR
Sbjct: 61 SLTNKAHQNEKLGEIAREAKERLDERLRTHRKPENSR 97

[Close]

BLAST of Chy5G102930 vs. NCBI nr
Match: XP_038891102.1 (probable E3 ubiquitin-protein ligase RHY1A [Benincasa hispida])

HSP 1 Score: 170 bits (431), Expect = 1.55e-51
Identity = 89/97 (91.75%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 1  MAGMLPGVECARRRRFHQSINSSDSPYTAGKSGSTRRPSFCLYTSNRDFHLISSSSSQQR 60
          MAGMLPGVECARRRRFHQSI SSDSP TA KSGSTRRPSFCLYTSNRDFH  SSSSSQ R
Sbjct: 1  MAGMLPGVECARRRRFHQSIASSDSPSTAAKSGSTRRPSFCLYTSNRDFHSTSSSSSQHR 60

Query: 61 SSTNQAHQNEKLGEIAREAKERLDERLRTHRKPENSR 97
          SS+NQA+QNEKLGEIAREAKERLDERLRTHRKPENSR
Sbjct: 61 SSSNQAYQNEKLGEIAREAKERLDERLRTHRKPENSR 97

[Close]

BLAST of Chy5G102930 vs. NCBI nr
Match: XP_023545449.1 (probable E3 ubiquitin-protein ligase RHY1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165 bits (418), Expect = 8.17e-50
Identity = 88/99 (88.89%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1  MAGMLPGVECARRRRFHQSINSSDSPYTAGKSGSTRRPSFCLYTSNRDFHLISSSSS--Q 60
          MAGMLPGVECARRRRFHQSI SSDSP TA K GSTRRPSFCLYTSNRDFH+ SSSSS  Q
Sbjct: 1  MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHITSSSSSSSQ 60

Query: 61 QRSSTNQAHQNEKLGEIAREAKERLDERLRTHRKPENSR 97
          QRSS+NQA+QNEKLGEIAREAKERLDERLRTHRKPEN R
Sbjct: 61 QRSSSNQAYQNEKLGEIAREAKERLDERLRTHRKPENPR 99

[Close]

BLAST of Chy5G102930 vs. TAIR 10
Match: AT2G15580.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 48/95 (50.53%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 1  MAGMLPGVECARRRRFH---QSINSSDSPYTAGKSGS--TRRPSFCLYTSNRDFHL--IS 60
          MAGMLPGVECARRRRFH     I SS++   A  +G   TRRPSF LYT+N + H   +S
Sbjct: 1  MAGMLPGVECARRRRFHGGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESHQAHVS 60

Query: 61 SSSSQQRSSTNQAHQNEKLGEIAREAKERLDERLR 89
           S    R+ +     +EKL   A+EAK+RL++RLR
Sbjct: 61 FSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLR 95

[Close]

BLAST of Chy5G102930 vs. TAIR 10
Match: AT2G15580.2 (RING/U-box superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 48/95 (50.53%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 1  MAGMLPGVECARRRRFH---QSINSSDSPYTAGKSGS--TRRPSFCLYTSNRDFHL--IS 60
          MAGMLPGVECARRRRFH     I SS++   A  +G   TRRPSF LYT+N + H   +S
Sbjct: 1  MAGMLPGVECARRRRFHGGAPPIESSNTASVAAAAGHVWTRRPSFSLYTTNHESHQAHVS 60

Query: 61 SSSSQQRSSTNQAHQNEKLGEIAREAKERLDERLR 89
           S    R+ +     +EKL   A+EAK+RL++RLR
Sbjct: 61 FSERSVRNKSYGEDNDEKLDGAAKEAKQRLNKRLR 95

The following BLAST results are available for this feature:

BLAST of Chy5G102930 vs.


Match Name	E-value	Identity	Description

BLAST of Chy5G102930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG47	1.4e-42	95.88	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009360 P...	[more]
A0A5A7V635	2.6e-41	94.85	RING-H2 finger protein ATL16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C563	2.6e-41	94.85	RING-H2 finger protein ATL16 OS=Cucumis melo OX=3656 GN=LOC103496570 PE=4 SV=1	[more]
A0A6J1G4D6	8.7e-37	87.76	probable E3 ubiquitin-protein ligase RHY1A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1KK21	1.3e-35	84.00	probable E3 ubiquitin-protein ligase RHY1A OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of Chy5G102930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139268.1	4.85e-56	95.88	probable E3 ubiquitin-protein ligase RHY1A [Cucumis sativus] >KGN60748.1 hypothe...	[more]
KAA0063553.1	8.51e-56	94.85	RING-H2 finger protein ATL16 [Cucumis melo var. makuwa] >TYJ97880.1 RING-H2 fing...	[more]
XP_008456709.1	2.01e-54	94.85	PREDICTED: RING-H2 finger protein ATL16 [Cucumis melo]	[more]
XP_038891102.1	1.55e-51	91.75	probable E3 ubiquitin-protein ligase RHY1A [Benincasa hispida]	[more]
XP_023545449.1	8.17e-50	88.89	probable E3 ubiquitin-protein ligase RHY1A [Cucurbita pepo subsp. pepo]	[more]

BLAST of Chy5G102930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G15580.1	1.3e-13	50.53	RING/U-box superfamily protein	[more]
AT2G15580.2	1.3e-13	50.53	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy5G102930.1	Chy5G102930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
molecular_function	GO:0061630	ubiquitin protein ligase activity