Chy5G102670 (gene) Cucumber (hystrix) v1

Overview


Name	Chy5G102670
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	VQ domain-containing protein
Location	chrH05: 16625246 .. 16625832 (+)
RNA-Seq Expression	Chy5G102670
Synteny	Chy5G102670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGTGTGGAGAGAATCAATACACCAACCACAACCAAAGCCAAAGCCAAAGCCAAAGCCAAAACCCTACAAAAGTTCAGAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACCGGCTTCGACTCCAATACTCCTACTCGCCGGAGGAACCAGAAATTGCTCTCCGACTATGCCCGAACTCCATCTGCAATGTTTCATACAGATCGTCATGAAATGGAAGTTTTGAAGTTCTCAGATGATCATCACATGGAGTCGCTCCTCCAATTTGATGATCAAGGTTGTTTTGACACACAAAATAATAACAATATTCTTCCCAACAACATTATGGAGTTTCAATCTTCTTGTTTTTTTCAATAGATTATATTTATGGTTGTCTCTTTTTGTTGTTTTGGTTGGGAATTCAAGTATATATATGCAAAAAAGAAAGCAAATTTTCAAGCTTCAAGTATATATATATATATATATACTTTATTTGAACTTGCTTATGTCAATTAGGATCAATTGCTGTTCAGACACATATTTGA

mRNA sequence

ATGGGGAAGTGTGGAGAGAATCAATACACCAACCACAACCAAAGCCAAAGCCAAAGCCAAAGCCAAAACCCTACAAAAGTTCAGAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACCGGCTTCGACTCCAATACTCCTACTCGCCGGAGGAACCAGAAATTGCTCTCCGACTATGCCCGAACTCCATCTGCAATGTTTCATACAGATCGTCATGAAATGGAAGTTTTGAAGTTCTCAGATGATCATCACATGGAGTCGCTCCTCCAATTTGATGATCAAGGATCAATTGCTGTTCAGACACATATTTGA

Coding sequence (CDS)

ATGGGGAAGTGTGGAGAGAATCAATACACCAACCACAACCAAAGCCAAAGCCAAAGCCAAAGCCAAAACCCTACAAAAGTTCAGAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACCGGCTTCGACTCCAATACTCCTACTCGCCGGAGGAACCAGAAATTGCTCTCCGACTATGCCCGAACTCCATCTGCAATGTTTCATACAGATCGTCATGAAATGGAAGTTTTGAAGTTCTCAGATGATCATCACATGGAGTCGCTCCTCCAATTTGATGATCAAGGATCAATTGCTGTTCAGACACATATTTGA

Protein sequence

MGKCGENQYTNHNQSQSQSQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSNTPTRRRNQKLLSDYARTPSAMFHTDRHEMEVLKFSDDHHMESLLQFDDQGSIAVQTHI*

Homology

[Close]

BLAST of Chy5G102670 vs. ExPASy TrEMBL
Match: A0A0A0LIA7 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.7e-53
Identity = 110/121 (90.91%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MGKCGENQYTNHNQSQSQSQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60
           MGKCGENQYTNHN SQSQSQ+QNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FDSNTPTRRRNQKLLSDYARTPSAMFHTDRHEMEVLKFSDDHHMESLLQFDDQGSIAVQT 120
           FDSNTPTRRRNQKLLSD ARTPSAMFH DRHEMEVLKFSDDHHMESLLQFD QG    Q 
Sbjct: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120

Query: 121 H 122
           +
Sbjct: 121 N 121

[Close]

BLAST of Chy5G102670 vs. ExPASy TrEMBL
Match: A0A5A7V7M1 (VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G00880 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 4.0e-23
Identity = 65/77 (84.42%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 41  MMIKASNALEFRAIVQQLTGFDSN-TPTRRRNQKLLSDYARTPSAMFHTDRHEMEVLKFS 100
           MMIKAS+ALEFRAIVQQLTGFDSN TPTRRRNQK +SD ARTPS+MFH DR EMEVLKFS
Sbjct: 1   MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPSSMFHADR-EMEVLKFS 60

Query: 101 DDHHMESLLQFDDQGSI 117
           DD HM SLLQFDDQG +
Sbjct: 61  DD-HMASLLQFDDQGCL 75

[Close]

BLAST of Chy5G102670 vs. ExPASy TrEMBL
Match: A0A6J1A533 (uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC110414990 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.4e-09
Identity = 44/97 (45.36%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 20  QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSNTPTRRRNQKLLSDYA 79
           +S+NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG +S+          L + A
Sbjct: 30  KSKNPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTGRNSDVGEPSNVPTTLPEEA 89

Query: 80  RTPSAMFHTDRHEMEVLKFSDDHHMESLLQFDDQGSI 117
               + FH D    +V    DD  +    Q DD  S+
Sbjct: 90  NQVHSPFHVDSPPAKV----DDKSLLDTFQ-DDMSSL 121

[Close]

BLAST of Chy5G102670 vs. ExPASy TrEMBL
Match: W9RT96 (VQ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_024544 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-08
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 0


Query: 5   GENQYTNHNQSQSQSQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSN 64
           G +QY N+   +SQ Q   P+K ++KPIK+KYISSPMM++A+NA EFRAIVQ+LTG +SN
Sbjct: 8   GNSQYQNNPHLRSQKQ---PSKGKKKPIKIKYISSPMMVRANNASEFRAIVQELTGRNSN 67

Query: 65  TPTRRRNQKLLSDYARTPSAMFHTDRHEMEVLKFSDDHH 104
                 +        RT +    +D  +    +FS D+H
Sbjct: 68  YTDLYDDVHHDESLNRTTTIFSESDHDQPGWSQFSADYH 103

[Close]

BLAST of Chy5G102670 vs. ExPASy TrEMBL
Match: A0A2P6R5P1 (VQ domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0450331 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.4e-07
Identity = 47/108 (43.52%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 8   QYTNHNQSQSQSQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSNT-- 67
           Q  N    Q +++ Q  +K +  PI +KYISSPMM++A+NA EFRAIVQ+LTG +S+T  
Sbjct: 3   QLRNCENRQQRAERQKRSKAE-TPIMIKYISSPMMVQANNASEFRAIVQELTGQNSDTTI 62

Query: 68  PTRRRNQ-KLLSDYARTPSAMFHTDRHEMEVLKFSDDHHMESLLQFDD 113
           P    NQ   +S++  + SA   T   + E++KFSDD  +E   QFD+
Sbjct: 63  PDHGTNQASWVSNHRASQSANMKTQNAD-ELMKFSDD-RVEVFSQFDE 107

[Close]

BLAST of Chy5G102670 vs. NCBI nr
Match: KGN60779.1 (hypothetical protein Csa_019238 [Cucumis sativus])

HSP 1 Score: 219 bits (557), Expect = 4.42e-71
Identity = 110/121 (90.91%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MGKCGENQYTNHNQSQSQSQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60
           MGKCGENQYTNHN SQSQSQ+QNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FDSNTPTRRRNQKLLSDYARTPSAMFHTDRHEMEVLKFSDDHHMESLLQFDDQGSIAVQT 120
           FDSNTPTRRRNQKLLSD ARTPSAMFH DRHEMEVLKFSDDHHMESLLQFD QG    Q 
Sbjct: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120

[Close]

BLAST of Chy5G102670 vs. NCBI nr
Match: KAG6599333.1 (hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127 bits (320), Expect = 3.90e-35
Identity = 73/122 (59.84%), Postives = 85/122 (69.67%), Query Frame = 0


Query: 1   MGKCGENQYTNHNQSQSQSQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60
           MGKCGEN++      + Q QSQNPTKVQRKPIKVKYISSPMMIKASNA EFRAIVQQLTG
Sbjct: 1   MGKCGENEW------KDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTG 60

Query: 61  FDSNTPTRRRNQKLLSDYARTPSAMFHTDRHEMEVLKFSDDHHMESLLQFDDQGSIAVQT 120
           F S++PTRR N K     A+TPS        +ME LK SD+  M SLL+FDD+       
Sbjct: 61  FTSHSPTRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSDN--MSSLLEFDDEACFVTLD 114

Query: 121 HI 122
           ++
Sbjct: 121 NV 114

[Close]

BLAST of Chy5G102670 vs. NCBI nr
Match: KAA0063578.1 (hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (296), Expect = 3.87e-32
Identity = 65/79 (82.28%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 41  MMIKASNALEFRAIVQQLTGFDSN-TPTRRRNQKLLSDYARTPSAMFHTDRHEMEVLKFS 100
           MMIKAS+ALEFRAIVQQLTGFDSN TPTRRRNQK +SD ARTPS+MFH DR EMEVLKFS
Sbjct: 1   MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPSSMFHADR-EMEVLKFS 60

Query: 101 DDHHMESLLQFDDQGSIAV 118
           DDH M SLLQFDDQG + +
Sbjct: 61  DDH-MASLLQFDDQGCLLL 77

[Close]

BLAST of Chy5G102670 vs. NCBI nr
Match: XP_021282108.1 (uncharacterized protein LOC110414990 [Herrania umbratica])

HSP 1 Score: 70.1 bits (170), Expect = 2.70e-12
Identity = 44/96 (45.83%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 21  SQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSNTPTRRRNQKLLSDYAR 80
           S+NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG +S+          L + A 
Sbjct: 31  SKNPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTGRNSDVGEPSNVPTTLPEEAN 90

Query: 81  TPSAMFHTDRHEMEVLKFSDDHHMESLLQFDDQGSI 116
              + FH D    +V    DD  +    Q DD  S+
Sbjct: 91  QVHSPFHVDSPPAKV----DDKSLLDTFQ-DDMSSL 121

[Close]

BLAST of Chy5G102670 vs. NCBI nr
Match: XP_010102262.1 (sigma factor binding protein 1, chloroplastic [Morus notabilis] >EXB93205.1 hypothetical protein L484_024544 [Morus notabilis])

HSP 1 Score: 70.5 bits (171), Expect = 2.87e-12
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 0


Query: 5   GENQYTNHNQSQSQSQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSN 64
           G +QY N+   +SQ Q   P+K ++KPIK+KYISSPMM++A+NA EFRAIVQ+LTG +SN
Sbjct: 8   GNSQYQNNPHLRSQKQ---PSKGKKKPIKIKYISSPMMVRANNASEFRAIVQELTGRNSN 67

Query: 65  TPTRRRNQKLLSDYARTPSAMFHTDRHEMEVLKFSDDHHMESLLQFDDQGSIAVQTH 121
                 +        RT +    +D  +    +FS D+H +     DD   +  + H
Sbjct: 68  YTDLYDDVHHDESLNRTTTIFSESDHDQPGWSQFSADYHPQGS---DDHALVDDRDH 118

The following BLAST results are available for this feature:

BLAST of Chy5G102670 vs.


Match Name	E-value	Identity	Description

BLAST of Chy5G102670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIA7	3.7e-53	90.91	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=...	[more]
A0A5A7V7M1	4.0e-23	84.42	VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A6J1A533	7.4e-09	45.36	uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]
W9RT96	2.1e-08	43.43	VQ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_024544 PE=4 SV...	[more]
A0A2P6R5P1	2.4e-07	43.52	VQ domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0450331...	[more]

BLAST of Chy5G102670 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60779.1	4.42e-71	90.91	hypothetical protein Csa_019238 [Cucumis sativus]	[more]
KAG6599333.1	3.90e-35	59.84	hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0063578.1	3.87e-32	82.28	hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa]	[more]
XP_021282108.1	2.70e-12	45.83	uncharacterized protein LOC110414990 [Herrania umbratica]	[more]
XP_010102262.1	2.87e-12	39.32	sigma factor binding protein 1, chloroplastic [Morus notabilis] >EXB93205.1 hypo...	[more]

BLAST of Chy5G102670 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 37..64 e-value: 5.1E-9 score: 35.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR33624:SF17	VQ MOTIF PROTEIN	coord: 10..111
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 10..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy5G102670.1	Chy5G102670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity