Chy5G099330 (gene) Cucumber (hystrix) v1

Overview


Name	Chy5G099330
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	60S acidic ribosomal protein P3
Location	chrH05: 13141761 .. 13142699 (-)
RNA-Seq Expression	Chy5G099330
Synteny	Chy5G099330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGTAAGTGGACCGCCAATCAGTATTCCGGTGACCTTGAAGGCTCCGCCGACTCCACCTACGAGCTCCAGAGGAAACTCGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGCGTTCAGTCCTCCTTCTCCTTCATTACTCCTTCCTCCGCCGTTTTCCAGGTATCCATCGTTTTCTCTGTTATTCTGGGTTTTCATTCCTCTCGATCTGATCCGTTTTCTCTTCAATCTCTAACTATAAACTCGCCTTCTCAGTTTCTGTTTGATTATTTAGTCTGTTTAGTAGTGTTTTTGTATGTATGAATATGTATTTTTTCCCCTTTTATTCGTGTATTGGGGGTCCATTGTTTTTCTAGTTAGGCATATGTTTGATGTTGGTTTCTTAACAATTGCGATTATGGGTTTTAGGTACGTGATCGTTTAAGCAACTATTGATTATGGGAATTTGCTAAATATATGGACATCTGATGAGTTAAAGCATTTTTTGTGATCATTTTAGTATGTTTATCCATGAGTTCCTTGATTAGTGTATGTCTTATCTGCATTCACTCATTGAATTTTTAGAAGATCTATAACATGTTTCAAGCAAAAATGTGTAATTCCCTGTCATAGTTCTTCTGAGATTGAGGTTTTTATTTAAGCTCTATTTATGATTTTTGACATCTTCCCAAGTATCCTCCTTGCTTGTCTGTTGTTGTCTGTTGTGTTTGCATGGTTTGAACATTCGTATTTCAGGTGATTGTTGGCGGTGTAAGTGGTGGCGGTGTCATTGCTGGTGGTGGAGCTGCAGCTGCCCCTGCTGGAGGAGCTGCTTCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGAAGACCTTGGCCTATCACTTTTTGATTAG

mRNA sequence

ATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGTAAGTGGACCGCCAATCAGTATTCCGGTGACCTTGAAGGCTCCGCCGACTCCACCTACGAGCTCCAGAGGAAACTCGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGCGTTCAGTCCTCCTTCTCCTTCATTACTCCTTCCTCCGCCGTTTTCCAGGTGATTGTTGGCGGTGTAAGTGGTGGCGGTGTCATTGCTGGTGGTGGAGCTGCAGCTGCCCCTGCTGGAGGAGCTGCTTCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGAAGACCTTGGCCTATCACTTTTTGATTAG

Coding sequence (CDS)

ATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGTAAGTGGACCGCCAATCAGTATTCCGGTGACCTTGAAGGCTCCGCCGACTCCACCTACGAGCTCCAGAGGAAACTCGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGCGTTCAGTCCTCCTTCTCCTTCATTACTCCTTCCTCCGCCGTTTTCCAGGTGATTGTTGGCGGTGTAAGTGGTGGCGGTGTCATTGCTGGTGGTGGAGCTGCAGCTGCCCCTGCTGGAGGAGCTGCTTCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGAAGACCTTGGCCTATCACTTTTTGATTAG

Protein sequence

MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITPSSAVFQVIVGGVSGGGVIAGGGAAAAPAGGAASAAAEAPAEKKEEVKEESDDEDLGLSLFD*

Homology

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BLAST of Chy5G099330 vs. ExPASy Swiss-Prot
Match: Q9LVC9 (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.9e-31
Identity = 77/120 (64.17%), Postives = 92/120 (76.67%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFS ++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIVGGVSGGGVIAGGGAAAAPAGGAASAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVF V++GG  GGG  AGGGAAA   GG  +AAA    EKK+E  EE ++ D G  LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEE-EEGDFGFDLF 119

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BLAST of Chy5G099330 vs. ExPASy Swiss-Prot
Match: P56724 (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 132.1 bits (331), Expect = 4.2e-30
Identity = 79/121 (65.29%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGV+TFVCRSSG +WTA Q  G+LE SA + YELQR+LV +A + DS+ GVQSSFS ++P
Sbjct: 1   MGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSP 60

Query: 61  SSAVFQVIVGGVSGGGVIAGGGAAAAPAGGAASAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           SSAVFQVI+G V GG  I GG AA A +GGAA+ A +A  EKKEE KEES+D DLG SLF
Sbjct: 61  SSAVFQVIIGAVGGGAAIGGGAAAGAASGGAAAEAPKA-EEKKEEEKEESED-DLGFSLF 119

Query: 121 D 122
           D
Sbjct: 121 D 119

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BLAST of Chy5G099330 vs. ExPASy Swiss-Prot
Match: O24413 (60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3)

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-29
Identity = 76/123 (61.79%), Postives = 95/123 (77.24%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGV+TFVCR++GG+WTA Q+SG++E SA + YELQR+LV +A + DS  GVQSSFS +TP
Sbjct: 1   MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTP 60

Query: 61  SSAVFQVIVGGVSGGG--VIAGGGAAAAPAGGAASAAAEAPAEKKEEVKEESDDEDLGLS 120
           SSAVFQVIVG V GG   V  GGG  AA +GG   AAAEAP E+K+E ++E  D+D+G S
Sbjct: 61  SSAVFQVIVGAVGGGAMMVSGGGGGGAAASGG---AAAEAPKEEKKEEEKEESDDDMGFS 120

Query: 121 LFD 122
           LFD
Sbjct: 121 LFD 120

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BLAST of Chy5G099330 vs. ExPASy Swiss-Prot
Match: Q9SVZ6 (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.6e-29
Identity = 79/122 (64.75%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVC++ GG W+A Q+ G+LE SA STYELQRKLVQ +LS DSSGGVQSSFS ++P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIVGGVSGGGVIAGGGAAAAPAGGAASAAAEAPAEKKEEVKEESDDE--DLGLS 120
           +SAVFQVIVGG  GGG  AGG   AA +GG A  AA AP E  E+ KEES++E  D G  
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGG---AASSGGGAGEAAAAPKE-DEKKKEESEEEEGDFGFD 118

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BLAST of Chy5G099330 vs. ExPASy Swiss-Prot
Match: P52855 (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.8e-04
Identity = 39/67 (58.21%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 55  FSFITPSSAVFQVIVGGVSGGGVIAGGGAAAAPAGGAASAAAEAPAEKKEEVKEESDDED 114
           F+ +     V  +I+   SGGG  A   AAAAPAGGAA+AAA A  EKKEE KEESDD D
Sbjct: 46  FAKLLEKRNVEDLILSVGSGGG--AAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESDD-D 105

Query: 115 LGLSLFD 122
           +G SLFD
Sbjct: 106 MGFSLFD 109

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BLAST of Chy5G099330 vs. ExPASy TrEMBL
Match: A0A0A0LJB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.7e-50
Identity = 117/121 (96.69%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIVGGVSGGGVIAGGGAAAAPAGGAASAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           SSAVFQVIVGG SGGG  AGGGAAAAPAGGAA AAAEAPAEKKEEVKEESDDEDLGLSLF
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 121

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BLAST of Chy5G099330 vs. ExPASy TrEMBL
Match: A0A5D3BNN6 (60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00960 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.7e-48
Identity = 114/121 (94.21%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIVGGVSGGGVIAGGGAAAAPAGGAASAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVFQVIVGG  GGG I GGGAAAAPAGG A AAAEAPAEKKEEVKEESDDEDLGLSLF
Sbjct: 61  TSAVFQVIVGGGGGGGFI-GGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 120

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BLAST of Chy5G099330 vs. ExPASy TrEMBL
Match: A0A1S3BRK9 (60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.7e-48
Identity = 114/121 (94.21%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIVGGVSGGGVIAGGGAAAAPAGGAASAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVFQVIVGG  GGG I GGGAAAAPAGG A AAAEAPAEKKEEVKEESDDEDLGLSLF
Sbjct: 61  TSAVFQVIVGGGGGGGFI-GGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 120

[Close]

BLAST of Chy5G099330 vs. ExPASy TrEMBL
Match: A0A6J1KB28 (60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492258 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.5e-46
Identity = 104/121 (85.95%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  SSAVFQVIVGGVSGGGVIAGGGAAAAPAGGAASAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVFQVI+GG SGGG I GGGAAAAPAGG A AAAEAPAEKKEEVKEESDD+DLG SLF
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Chy5G099330 vs. ExPASy TrEMBL
Match: A0A6J1ENN1 (60S acidic ribosomal protein P3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111436268 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.5e-46
Identity = 104/121 (85.95%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  SSAVFQVIVGGVSGGGVIAGGGAAAAPAGGAASAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVFQVI+GG SGGG I GGGAAAAPAGG A AAAEAPAEKKEEVKEESDD+DLG SLF
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Chy5G099330 vs. NCBI nr
Match: XP_004148320.1 (60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical protein Csa_021210 [Cucumis sativus])

HSP 1 Score: 207 bits (528), Expect = 6.20e-67
Identity = 117/121 (96.69%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIVGGVSGGGVIAGGGAAAAPAGGAASAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           SSAVFQVIVGG SGGG  AGGGAAAAPAGGAA AAAEAPAEKKEEVKEESDDEDLGLSLF
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

[Close]

BLAST of Chy5G099330 vs. NCBI nr
Match: XP_008451467.1 (PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa] >TYK01401.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (507), Expect = 9.56e-64
Identity = 114/121 (94.21%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIVGGVSGGGVIAGGGAAAAPAGGAASAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVFQVIVGG  GGG I GGGAAAAPAGG A AAAEAPAEKKEEVKEESDDEDLGLSLF
Sbjct: 61  TSAVFQVIVGGGGGGGFI-GGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

[Close]

BLAST of Chy5G099330 vs. NCBI nr
Match: XP_038889531.1 (60S acidic ribosomal protein P3-2 [Benincasa hispida])

HSP 1 Score: 199 bits (505), Expect = 2.06e-63
Identity = 114/122 (93.44%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIVGGVSGGGVIAGGG-AAAAPAGGAASAAAEAPAEKKEEVKEESDDEDLGLSL 120
           +SAVFQVIVGG  GGG I GGG AAAAPAGG A AAAEAPAEKKEEVKEESDDEDLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

[Close]

BLAST of Chy5G099330 vs. NCBI nr
Match: XP_022929782.1 (60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S acidic ribosomal protein P3-2-like [Cucurbita maxima] >XP_023521367.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >XP_023545674.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >KAG6598882.1 60S acidic ribosomal protein P3-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029833.1 60S acidic ribosomal protein P3-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192 bits (488), Expect = 7.78e-61
Identity = 104/121 (85.95%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  SSAVFQVIVGGVSGGGVIAGGGAAAAPAGGAASAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVFQVI+GG SGGG I GGGAAAAPAGG A AAAEAPAEKKEEVKEESDD+DLG SLF
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120

[Close]

BLAST of Chy5G099330 vs. NCBI nr
Match: XP_023537756.1 (60S acidic ribosomal protein P3 [Cucurbita pepo subsp. pepo] >KAG6586095.1 60S acidic ribosomal protein P3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020919.1 60S acidic ribosomal protein P3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183 bits (464), Expect = 3.43e-57
Identity = 102/121 (84.30%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCR SGG+WTANQYSGDLEGSA STY+LQRKLV SALSVDSSGGVQSSFS+++P
Sbjct: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60

Query: 61  SSAVFQVIVGGVSGGGVIAGGGAAAAPAGGAASAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           SSAVFQVI+GG SGGG+I+GG AAAAPAGGAA AA EAPA  KEEVKEESDD+DLG SLF
Sbjct: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAA-EAPAPAKEEVKEESDDDDLGFSLF 120

[Close]

BLAST of Chy5G099330 vs. TAIR 10
Match: AT5G57290.1 (60S acidic ribosomal protein family )

HSP 1 Score: 136.0 bits (341), Expect = 2.1e-32
Identity = 77/120 (64.17%), Postives = 92/120 (76.67%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFS ++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIVGGVSGGGVIAGGGAAAAPAGGAASAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVF V++GG  GGG  AGGGAAA   GG  +AAA    EKK+E  EE ++ D G  LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEE-EEGDFGFDLF 119

[Close]

BLAST of Chy5G099330 vs. TAIR 10
Match: AT5G57290.3 (60S acidic ribosomal protein family )

HSP 1 Score: 131.7 bits (330), Expect = 3.9e-31
Identity = 77/120 (64.17%), Postives = 92/120 (76.67%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFS ++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIVGGVSGGGVIAGGGAAAAPAGGAASAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVF V++GG  GGG  AGGGAAA   GG  +AAA    EKK+E  EE ++ D G  LF
Sbjct: 61  TSAVF-VVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEE-EEGDFGFDLF 118

[Close]

BLAST of Chy5G099330 vs. TAIR 10
Match: AT4G25890.1 (60S acidic ribosomal protein family )

HSP 1 Score: 129.0 bits (323), Expect = 2.5e-30
Identity = 79/122 (64.75%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVC++ GG W+A Q+ G+LE SA STYELQRKLVQ +LS DSSGGVQSSFS ++P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIVGGVSGGGVIAGGGAAAAPAGGAASAAAEAPAEKKEEVKEESDDE--DLGLS 120
           +SAVFQVIVGG  GGG  AGG   AA +GG A  AA AP E  E+ KEES++E  D G  
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGG---AASSGGGAGEAAAAPKE-DEKKKEESEEEEGDFGFD 118

[Close]

BLAST of Chy5G099330 vs. TAIR 10
Match: AT5G57290.2 (60S acidic ribosomal protein family )

HSP 1 Score: 117.9 bits (294), Expect = 5.9e-27
Identity = 59/82 (71.95%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 1  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
          MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFS ++P
Sbjct: 1  MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61 SSAVFQVIVGGVSGGGVIAGGG 83
          +SAVF V++GG  GGG  AGGG
Sbjct: 61 TSAVFVVVIGGGGGGGFAAGGG 82

The following BLAST results are available for this feature:

BLAST of Chy5G099330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVC9	2.9e-31	64.17	60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 ...	[more]
P56724	4.2e-30	65.29	60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06...	[more]
O24413	1.6e-29	61.79	60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3	[more]
Q9SVZ6	3.6e-29	64.75	60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 ...	[more]
P52855	6.8e-04	58.21	60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1	[more]

BLAST of Chy5G099330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJB2	1.7e-50	96.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1	[more]
A0A5D3BNN6	4.7e-48	94.21	60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BRK9	4.7e-48	94.21	60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 S...	[more]
A0A6J1KB28	7.5e-46	85.95	60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC1114922...	[more]
A0A6J1ENN1	7.5e-46	85.95	60S acidic ribosomal protein P3-2-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of Chy5G099330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148320.1	6.20e-67	96.69	60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical pro...	[more]
XP_008451467.1	9.56e-64	94.21	PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S ac...	[more]
XP_038889531.1	2.06e-63	93.44	60S acidic ribosomal protein P3-2 [Benincasa hispida]	[more]
XP_022929782.1	7.78e-61	85.95	60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S ...	[more]
XP_023537756.1	3.43e-57	84.30	60S acidic ribosomal protein P3 [Cucurbita pepo subsp. pepo] >KAG6586095.1 60S a...	[more]

BLAST of Chy5G099330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57290.1	2.1e-32	64.17	60S acidic ribosomal protein family	[more]
AT5G57290.3	3.9e-31	64.17	60S acidic ribosomal protein family	[more]
AT4G25890.1	2.5e-30	64.75	60S acidic ribosomal protein family	[more]
AT5G57290.2	5.9e-27	71.95	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 76..120 e-value: 4.4E-11 score: 43.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..121
IPR044252	60S acidic ribosomal protein P3-like	PANTHER	PTHR47207	60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED	coord: 1..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy5G099330.1	Chy5G099330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome