Chy5G097930 (gene) Cucumber (hystrix) v1

Overview


Name	Chy5G097930
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chrH05: 10378756 .. 10378998 (+)
RNA-Seq Expression	Chy5G097930
Synteny	Chy5G097930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAATATCAGCAACAATAAGAGAGTAGAAAATCAGTGCAAACCACTAGGAGGAGGTTTACAGCCGCACGAGCAGATGAAAGGCGGCGGTGGCGCCACTGAAACGAAGAGAGACGGCGTCGACGACGACACTAAAGTGCTGAGATGGGGAAACAGCCGGCTTGGGAAAAATGGAAAAGAGAAAGAAACGGGCTTAAAGTACGGAAGAGGAAGGAGCGATACGTACGGTTGTGAACCCTAG

mRNA sequence

ATGGATAATATCAGCAACAATAAGAGAGTAGAAAATCAGTGCAAACCACTAGGAGGAGGTTTACAGCCGCACGAGCAGATGAAAGGCGGCGGTGGCGCCACTGAAACGAAGAGAGACGGCGTCGACGACGACACTAAAGTGCTGAGATGGGGAAACAGCCGGCTTGGGAAAAATGGAAAAGAGAAAGAAACGGGCTTAAAGTACGGAAGAGGAAGGAGCGATACGTACGGTTGTGAACCCTAG

Coding sequence (CDS)

ATGGATAATATCAGCAACAATAAGAGAGTAGAAAATCAGTGCAAACCACTAGGAGGAGGTTTACAGCCGCACGAGCAGATGAAAGGCGGCGGTGGCGCCACTGAAACGAAGAGAGACGGCGTCGACGACGACACTAAAGTGCTGAGATGGGGAAACAGCCGGCTTGGGAAAAATGGAAAAGAGAAAGAAACGGGCTTAAAGTACGGAAGAGGAAGGAGCGATACGTACGGTTGTGAACCCTAG

Protein sequence

MDNISNNKRVENQCKPLGGGLQPHEQMKGGGGATETKRDGVDDDTKVLRWGNSRLGKNGKEKETGLKYGRGRSDTYGCEP*

Homology

[Close]

BLAST of Chy5G097930 vs. ExPASy TrEMBL
Match: A0A5D3BKF7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold429G00180 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.1e-12
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 27 MKGGGGATETKRDGVDDDTKVLRWGNSRLGKNGKEKETGLKYGRGRSDTYG 78
          MKG GGATETKR GVDDD KVL+WGNSR GK GK K+TGLKYGRGR +  G
Sbjct: 1  MKGRGGATETKRGGVDDDNKVLKWGNSRPGKKGKGKDTGLKYGRGRVNPSG 51

[Close]

BLAST of Chy5G097930 vs. ExPASy TrEMBL
Match: A0A5A7TFU1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00580 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.1e-12
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 27 MKGGGGATETKRDGVDDDTKVLRWGNSRLGKNGKEKETGLKYGRGRSDTYG 78
          MKG GGATETKR GVDDD KVL+WGNSR GK GK K+TGLKYGRGR +  G
Sbjct: 1  MKGRGGATETKRGGVDDDNKVLKWGNSRPGKKGKGKDTGLKYGRGRVNPSG 51

[Close]

BLAST of Chy5G097930 vs. NCBI nr
Match: KAA0040427.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 4.09e-15
Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 27 MKGGGGATETKRDGVDDDTKVLRWGNSRLGKNGKEKETGLKYGRGRSDTYGC 78
          MKG GGATETKR GVDDD KVL+WGNSR GK GK K+TGLKYGRGR +  G 
Sbjct: 1  MKGRGGATETKRGGVDDDNKVLKWGNSRPGKKGKGKDTGLKYGRGRVNPSGA 52

[Close]

BLAST of Chy5G097930 vs. NCBI nr
Match: TYJ98688.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 4.09e-15
Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 27 MKGGGGATETKRDGVDDDTKVLRWGNSRLGKNGKEKETGLKYGRGRSDTYGC 78
          MKG GGATETKR GVDDD KVL+WGNSR GK GK K+TGLKYGRGR +  G 
Sbjct: 1  MKGRGGATETKRGGVDDDNKVLKWGNSRPGKKGKGKDTGLKYGRGRVNPSGA 52

The following BLAST results are available for this feature:

BLAST of Chy5G097930 vs.


Match Name	E-value	Identity	Description

BLAST of Chy5G097930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BKF7	6.1e-12	76.47	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TFU1	6.1e-12	76.47	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Chy5G097930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040427.1	4.09e-15	75.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYJ98688.1	4.09e-15	75.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Chy5G097930 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy5G097930.1	Chy5G097930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding