Chy5G097770 (gene) Cucumber (hystrix) v1

Overview
NameChy5G097770
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionResponse regulatory domain-containing protein
LocationchrH05: 9950004 .. 9953365 (+)
RNA-Seq ExpressionChy5G097770
SyntenyChy5G097770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTATTCGTAAAAAGTTGAAGGTTGAAAATGGAAACAAAGCCATTGATGCTTTCCAAGGTGGTGCTATTTCTTTTTATTTTGTTTTTATGGACATGGAAATGCCTATCATGGATGGCCTTCAGGTACAATTGTCAATTCTCCATACCATCAAAATCATTTCTACCTGATATCTTATATTTTTTTTTTATTATTCCTTAAAAACACATTTGAAATATTCTATGCTATAATTTCAAAAATTATTTTTTATTAATTTTTCAAATTTTGGTTAATTTTTTGAAAAATATGTTGGAAAGTAGGTTATAAAACAAGAAAGTTGTAGATAGAAATAATGATTGTTAGCTTATTTTTCAAATCAAAATACCAATAACAAAATAGTTATCAAATAAGGCATTTACATTGTTTTCTGGTTTTAAAAGTTATGTTTTATCTTTGTATGGTTATCAACATATTTTAAGATATATTTAATTTCATAGTAGTCGATTTTTTTTAAATAAAAGTTTTTAAAAACTAGATTTGTTTAAACGTCTTAGGTAACAACTTTATTTTTATTTTTAAATTTTGAAAAGTAAATGTATTTTCTATTAACTTCTTAAAACATTTTATATATATATTATTCCATAAGTACAAGACTTCAAAATAAGCTTTTTTTTTTTCCTTCAAAATTTGACTTAGTTTTTTAATATATATCGTTAAAAATGTATTGATAACAAATTAAAAAAAAATTAGTGGTGAAGAAGAGTGCTTGAAGATTTAATTTTAAATAATCAAAAACAAAACTTGCCTAGATTGATTTAACAAGAAAGATTTTTAGAAATAGAATAATTAGGTAAAATATTTACGGTCCATAGCAAATTTTTAACCTAAGACCAAAACAGATGGTGAATTACCAAAAATGTCCCTGAAAAGCTAAATCCCAAAAACTAATCACAATTTTTTCTTTCCATACTCGACAAACAAAATGATATCTTTCTATTAGTGATACAAATTAATATCTTTCTATCAGTGATACAAACTAATATCTTTCTATCAATAATACAAACTGATACCTATTTGTATCAAAGTTTATATATCATGGGTAGCAAAGTTTGACTTGAGTTTTCTTGACTTGAAAAGAGAGACCGAGGTTGAATTAGCTTGAAAATTATAGAGTGGTCAAGTGAGAGGATTAGAAACTACCATTAAAAAGAATGATATTGAGAGTGGATTTTTGGTCTTTTTGGCTCAATAGGGTTGAGAATATATATTAGCCCCCTTCCTGTGCACAAATAATTAAAAATCGAAGACTTGATAGCATGTAATTGATACATGGAGTTTCTTTCTATTGGCCTCTCTCAGTTCTATCATTGATAGAAAATTATCAATTTCTATCGGTGATAGACACTGACAGAGAAACGTATCAGTTTTCATCAGTGTGATAGAAACTGGTATCAATGTGTATCCATTCAATTCTATAAGAATTAATTTGAAAAAAAATATACATGGAGTTTCAATGTGGTAACTTTGGTAGACACTAATATAAAGGTGTCGATGTGTATAATTGTATAAGTTTATACACCATATGTTTCAATTCAAAGATGAATACAAACAAAGACATCGACGTGTTTTATTGATATAAATAATTTAAAAAAATAACACTCATAAATTCCAATATAAATCCATTTGGTGATACAACATAAAAATGCAACTATAATTATTACATCATTGATTAATTTGACGAAGTTTGCAAGTCCTAGAATTATGACCCTTTGCCATAACAAGTACCTACATCTTGTCGCACACAACCTAAATATGTTGACAACAATGTTAAGCATCCAAAGAATAGCAAGAGCATGAAAACGAAGAATCTCATGGAAATCCCATACTCGACAGCTACAAGATTTCAAGTTCAACTTCACTATGAATTGTTTAACACAGACCATTACATTGTATTCAAAATTGTTGATAGGATGAACCTAATAAATGAAAATAGAAAAAAAAAACTAATATTGAATAAACGTTCATTAATTGTTCTATCATAGTTTATCACTGATAGACAGTGATAGAAGTCTATCACTGATCTTTCTTTCTTCCATCAATTTTGATATATCTAAATAAAAAAAATGAAAAAAAGAAAGAACTCTTACCAAGAAACTTCCTGATTCTTCATGTTGCTTGCATAATATATTTTCAGCTCAAGAGGTTAAACTTGTTTTCATTGACAAACTAGCTTTTCTTCGATTGTTGTCCATCAGTGATAGAAAGTGATAGAGCTCTATTGCAAACTAATTTTAATTACTATATTTTCACACAGTATAATTGAAAGATAAACCCTAAATCCCACATCTTCACATAAAAAAAGAGACTAAAATTTCAAATTATATGTAAATCAGTACACACAAAAATTGAAGCCAAGGATGAACTAATTATATGTATGAATCACAGACAAATAAAAATGAACATTCTTAAAACATAAATAATTTGCAGAAAATAATCCACAAAATTTAAATTAGTTCACAAAAAAAGAAAACAGAACATCAATTAATTAAAACCTAAATATAAAAAAAAAAAGTAGCAGCAAAGAAAGAAGAACAAGAAGAAAAAAAAAAGAAAAAGAAAAAAGGAATGTCCCAAAATGAAATTGTGTTGATATGTTGGTGAGGGATGTGGAAACATGAATAAGATGAAGGAAAGACAAAAAAAATAAAAAAAGAATACCAGGATAGGAAGTTATTGCCAATGATGGATGTGGAAACACCGACTGTGGAAATACTTGCAGCAATATTTGAGACAAACGAAGAAAATGATGAGGAAAAAACAACGAAGAAGATCAGAATAAAAATAATATGGAAGAAAGAAGTTGGAATAAGAAGTCACCAAAAGAAAACGAATGAGATATTCCTCACGTGAATATTTGAATAAGTGTGCTAGGGGTATTTTTGGAATAACATAAAACTAATATATTTTCTTCAACTTTTTTGTTACAGGATAATACTTTCCTTTTTTTTTCTATTTACATAAATTTTCCATTTAATAAACTATATAACAAGGAAAAGAAACTTTTAGGTGATAAGAGAGTGAGTTTCCTTTTCAAAAACCAAAAAGCTAGAAACCAAATAATAGTTAACCATTAAGATTGGATTAGAAGAGTTTTATTTATGAAGGAATATTATTTATCTGAAAATTTGATTACAAATAATTAGTGGTAATTTAGCTATGGGAACAATTTGAAAAAGAAAATGAAAAGGCAAGGAAGGAGGTGAGAAGTATGGGAGTGAAAAGCAAAATAGTTGGAGTGAATGAACACATGGCCCGACAACTTGTGAGAAGAAAGTTGTTTTTATGGAGGCTCGTCTTCACCATTGCCTCATCAACCCATTAA

mRNA sequence

ATGTCTATTCGTAAAAAGTTGAAGGTTGAAAATGGAAACAAAGCCATTGATGCTTTCCAAGGTGGTGCTATTTCTTTTTATTTTGTTTTTATGGACATGGAAATGCCTATCATGGATGGCCTTCAGCTATGGGAACAATTTGAAAAAGAAAATGAAAAGGCAAGGAAGGAGGTGAGAAGTATGGGAGTGAAAAGCAAAATAGTTGGAGTGAATGAACACATGGCCCGACAACTTGTGAGAAGAAAGTTGTTTTTATGGAGGCTCGTCTTCACCATTGCCTCATCAACCCATTAA

Coding sequence (CDS)

ATGTCTATTCGTAAAAAGTTGAAGGTTGAAAATGGAAACAAAGCCATTGATGCTTTCCAAGGTGGTGCTATTTCTTTTTATTTTGTTTTTATGGACATGGAAATGCCTATCATGGATGGCCTTCAGCTATGGGAACAATTTGAAAAAGAAAATGAAAAGGCAAGGAAGGAGGTGAGAAGTATGGGAGTGAAAAGCAAAATAGTTGGAGTGAATGAACACATGGCCCGACAACTTGTGAGAAGAAAGTTGTTTTTATGGAGGCTCGTCTTCACCATTGCCTCATCAACCCATTAA

Protein sequence

MSIRKKLKVENGNKAIDAFQGGAISFYFVFMDMEMPIMDGLQLWEQFEKENEKARKEVRSMGVKSKIVGVNEHMARQLVRRKLFLWRLVFTIASSTH*
Homology
[Close]
BLAST of Chy5G097770 vs. ExPASy TrEMBL
Match: A0A6J1CTH4 (two-component response regulator ARR22-like OS=Momordica charantia OX=3673 GN=LOC111014146 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.6e-06
Identity = 40/81 (49.38%), Postives = 49/81 (60.49%), Query Frame = 0 

Query: 1   MSIRKKLKV------ENGNKAIDAFQGGAISFYFVFMDMEMPIMDGLQLWEQFEKENEKA 60
           MS+ +KL V      E+G  A+DAFQ GA SF  V MD+EMP+MDG Q           A
Sbjct: 36  MSLLRKLNVEQVEAAESGKAAVDAFQCGA-SFDLVLMDLEMPLMDGAQ-----------A 95

Query: 61  RKEVRSMGVKSKIVGVNEHMA 76
            KE+R MGV+SKIVGV  + A
Sbjct: 96  TKELRRMGVESKIVGVTANGA 104

[Close]
BLAST of Chy5G097770 vs. ExPASy TrEMBL
Match: A0A438D7E0 (Two-component response regulator ARR22 OS=Vitis vinifera OX=29760 GN=ARR22_8 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.3e-05
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 0 

Query: 9   VENGNKAIDAFQGGAISFYFVFMDMEMPIMDGLQLWEQFEKENEKARKEVRSMGVKSKIV 68
           VENG +A+D ++ GA SF  + MD+EMPIMDG            KA KE+R+MGV+S IV
Sbjct: 40  VENGKEAVDLYRSGA-SFDLILMDLEMPIMDG-----------PKATKELRAMGVQSMIV 99

Query: 69  GVNEHMARQL-VRRKLFL 86
           GV    AR L V +++F+
Sbjct: 100 GVT---ARDLEVEKQMFM 102

[Close]
BLAST of Chy5G097770 vs. ExPASy TrEMBL
Match: A0A7J7GX70 (Response regulatory domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_018161 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.3e-05
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 9   VENGNKAIDAFQGGAISFYFVFMDMEMPIMDGLQLWEQFEKENEKARKEVRSMGVKSKIV 68
           V NGN+A+D ++ GA SF+ V MDMEMPIMDGL+           A +E+R+MGV S IV
Sbjct: 63  VGNGNEAVDLYRSGA-SFHLVLMDMEMPIMDGLE-----------ATRELRTMGVNSMIV 112

Query: 69  GV 71
           G+
Sbjct: 123 GM 112

[Close]
BLAST of Chy5G097770 vs. ExPASy TrEMBL
Match: A0A4S4ELM7 (Response regulatory domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_015731 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.7e-05
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 0 

Query: 9   VENGNKAIDAFQGGAISFYFVFMDMEMPIMDGLQLWEQFEKENEKARKEVRSMGVKSKIV 68
           V NG +A+D +  GA SF+ V MDMEMPIMDGL           KA +E+R+MGV S IV
Sbjct: 63  VGNGKEAVDLYHSGA-SFHLVLMDMEMPIMDGL-----------KATRELRAMGVNSMIV 112

Query: 69  GV 71
           G+
Sbjct: 123 GM 112

[Close]
BLAST of Chy5G097770 vs. ExPASy TrEMBL
Match: A0A4S4E386 (Response regulatory domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_004170 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.8e-05
Identity = 31/65 (47.69%), Postives = 40/65 (61.54%), Query Frame = 0 

Query: 9  VENGNKAIDAFQGGAISFYFVFMDMEMPIMDGLQLWEQFEKENEKARKEVRSMGVKSKIV 68
          V NG +A+D ++ GA SF+ VF DMEMPIMDG             A ++VR+MGV S IV
Sbjct: 45 VGNGKEAVDLYRAGA-SFHLVFRDMEMPIMDG-----------PNATRQVRAMGVNSMIV 97

Query: 69 GVNEH 74
          G+  H
Sbjct: 105 GMTSH 97

[Close]
BLAST of Chy5G097770 vs. NCBI nr
Match: XP_038889283.1 (two-component response regulator 24-like [Benincasa hispida])

HSP 1 Score: 69.7 bits (169), Expect = 1.27e-12
Identity = 43/78 (55.13%), Postives = 50/78 (64.10%), Query Frame = 0 

Query: 1   MSIRKKLKVE-----NGNKAIDAFQGGAISFYFVFMDMEMPIMDGLQLWEQFEKENEKAR 60
           MS+ KKL VE     NG +A++AFQGGA SF  V MD+EMP MDGLQ           A 
Sbjct: 37  MSLLKKLNVEAEAAENGKEAVEAFQGGA-SFDLVLMDLEMPAMDGLQ-----------AT 96

Query: 61  KEVRSMGVKSKIVGVNEH 73
           KE+R MGVKSKI+GV  H
Sbjct: 97  KELRRMGVKSKIIGVTGH 102

[Close]
BLAST of Chy5G097770 vs. NCBI nr
Match: KAF5944084.1 (hypothetical protein HYC85_018161 [Camellia sinensis])

HSP 1 Score: 57.0 bits (136), Expect = 1.52e-07
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 9   VENGNKAIDAFQGGAISFYFVFMDMEMPIMDGLQLWEQFEKENEKARKEVRSMGVKSKIV 68
           V NGN+A+D ++ GA SF+ V MDMEMPIMDGL+           A +E+R+MGV S IV
Sbjct: 63  VGNGNEAVDLYRSGA-SFHLVLMDMEMPIMDGLE-----------ATRELRTMGVNSMIV 112

Query: 69  GV 70
           G+
Sbjct: 123 GM 112

[Close]
BLAST of Chy5G097770 vs. NCBI nr
Match: XP_006448069.1 (two-component response regulator ARR22 [Citrus clementina] >XP_006492307.1 two-component response regulator ARR22 [Citrus sinensis] >ESR61309.1 hypothetical protein CICLE_v10017880mg [Citrus clementina] >KDO40589.1 hypothetical protein CISIN_1g045936mg [Citrus sinensis] >GAY51802.1 hypothetical protein CUMW_137020 [Citrus unshiu])

HSP 1 Score: 55.1 bits (131), Expect = 7.24e-07
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 0 

Query: 2   SIRKKLKV-ENGNKAIDAFQGGAISFYFVFMDMEMPIMDGLQLWEQFEKENEKARKEVRS 61
           S+  K++V ENG +A+D F+ GA  F+ VF+DMEMP+MDG++           A K +R+
Sbjct: 48  SVGFKVEVAENGKEAVDLFRTGA-KFHIVFIDMEMPVMDGIE-----------ATKAMRA 107

Query: 62  MGVKSKIVGVNEHMARQLVRRKLFL 85
           M V+SKIVGV    +     R++F+
Sbjct: 108 MKVESKIVGVTSRNSE--TEREVFM 118

[Close]
BLAST of Chy5G097770 vs. NCBI nr
Match: XP_028063700.1 (two-component response regulator 24-like [Camellia sinensis] >THG16926.1 hypothetical protein TEA_015731 [Camellia sinensis var. sinensis])

HSP 1 Score: 55.1 bits (131), Expect = 8.31e-07
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 0 

Query: 9   VENGNKAIDAFQGGAISFYFVFMDMEMPIMDGLQLWEQFEKENEKARKEVRSMGVKSKIV 68
           V NG +A+D +  GA SF+ V MDMEMPIMDGL           KA +E+R+MGV S IV
Sbjct: 63  VGNGKEAVDLYHSGA-SFHLVLMDMEMPIMDGL-----------KATRELRAMGVNSMIV 112

Query: 69  GV 70
           G+
Sbjct: 123 GM 112

[Close]
BLAST of Chy5G097770 vs. NCBI nr
Match: XP_028078522.1 (two-component response regulator 24-like [Camellia sinensis] >THG10362.1 hypothetical protein TEA_004170 [Camellia sinensis var. sinensis])

HSP 1 Score: 54.3 bits (129), Expect = 1.19e-06
Identity = 31/65 (47.69%), Postives = 40/65 (61.54%), Query Frame = 0 

Query: 9  VENGNKAIDAFQGGAISFYFVFMDMEMPIMDGLQLWEQFEKENEKARKEVRSMGVKSKIV 68
          V NG +A+D ++ GA SF+ VF DMEMPIMDG             A ++VR+MGV S IV
Sbjct: 45 VGNGKEAVDLYRAGA-SFHLVFRDMEMPIMDGPN-----------ATRQVRAMGVNSMIV 97

Query: 69 GVNEH 73
          G+  H
Sbjct: 105 GMTSH 97

The following BLAST results are available for this feature:
BLAST of Chy5G097770 vs.
Match NameE-valueIdentityDescription
BLAST of Chy5G097770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CTH43.6e-0649.38two-component response regulator ARR22-like OS=Momordica charantia OX=3673 GN=LO... [more]
A0A438D7E02.3e-0547.44Two-component response regulator ARR22 OS=Vitis vinifera OX=29760 GN=ARR22_8 PE=... [more]
A0A7J7GX702.3e-0551.61Response regulatory domain-containing protein OS=Camellia sinensis OX=4442 GN=HY... [more]
A0A4S4ELM76.7e-0551.61Response regulatory domain-containing protein OS=Camellia sinensis var. sinensis... [more]
A0A4S4E3868.8e-0547.69Response regulatory domain-containing protein OS=Camellia sinensis var. sinensis... [more]
BLAST of Chy5G097770 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038889283.11.27e-1255.13two-component response regulator 24-like [Benincasa hispida][more]
KAF5944084.11.52e-0751.61hypothetical protein HYC85_018161 [Camellia sinensis][more]
XP_006448069.17.24e-0741.18two-component response regulator ARR22 [Citrus clementina] >XP_006492307.1 two-c... [more]
XP_028063700.18.31e-0751.61two-component response regulator 24-like [Camellia sinensis] >THG16926.1 hypothe... [more]
XP_028078522.11.19e-0647.69two-component response regulator 24-like [Camellia sinensis] >THG10362.1 hypothe... [more]
BLAST of Chy5G097770 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.2300coord: 3..83
e-value: 4.3E-9
score: 38.2
IPR011006CheY-like superfamilySUPERFAMILY52172CheY-likecoord: 9..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy5G097770.1Chy5G097770.1mRNA