Chy5G094470 (gene) Cucumber (hystrix) v1

Overview


Name	Chy5G094470
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	CST complex subunit STN1
Location	chrH05: 4288459 .. 4289816 (-)
RNA-Seq Expression	Chy5G094470
Synteny	Chy5G094470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCAACGGCAACGTTTCTCCTTCTCCCTCTACCCAACCCATGTCAAGCTTCTTGGTTTCGACTTAAATTCCCTCAACCAAAATTCCTCTTCTAATTCAGTTTCTTTCTCTCGCAAAGCCTATGCCGTTTCCTGTACAGAGATCGTTGGCGTTGTGGTCTTCCGTGACCTGAAACCTAACAGGTTTCTTAAATTCTCCGTTGACGATGGTACTGCCTGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTACTTTGCTTCACGCCATCACCCAGATGTTCGTATTCTGGGAGATATGGCGACCCATTTCGCAGCTCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTATGAAGTGTTATGACCTCTCCCCTACACCCACTTAGCTGTAGATTCCATGGCTTTAAAATGCCATCTCTAGTCTTCTGATTTCCCTTTTTTTCTTTTTCCTTTCTGAAATGCTGAAAAGATTCCACTTTTTGTTGTTTACTGTACATAATTTTGCTCAACAGCTTGGCCTTCGAAATGATTATATAATAATATTGAAATTAAGTTGCCACCACCGACTCTGTTTACTGTTTAGTTTGATGAGAATTGGTAATGTTCAATGAGGAACCTCCAACTGATGATTTTCTTTTTCTGATCAAATAGATGGTTGGATTGTGAGTACTGAGTAAAACCATTTGAAGCTGCATATATTATTATATATATGTAGATATCAACCCATACCATAGCTGAGACAAATTTTACCCATCCATTACATCAAGTAGCAATGTAGGTGTTTGTTTATAGAACATGATTGGTAGATGTATGGGCCTTTACCTAAAGTTCTAGGTTTGTTTTCTTCTAGCATTTTTCTTTTGGGGGGGTGTGGGAGATGATTCTTTTTAAGTGAAAGATCATTTTGAGAAAAAGGAAATGGGTTGTAGGGATTTTCTTGTTCCAAACTGGATGAGTACAGGATGAACAATAGAAAGTCAAAATTAGAAACAAACAAGTCAATATTGATTGGAAAGAATGGCTTATGAACACTGATTAAAGGTAAGTTCAAACTGCAAAGTTGAATACTCTGTTACTGCATACCCCAAAATCACTCCACTTTTGACCAAAGTCATCATAATTCTGTGTCACTGAGATTTCATTTCACTATGGCTTTTACTGTTCTATTGCAACCTATGAATGAATATGCTTGGCTTTCTTTCATGCTCTCTCATTCCTTAGGTATTCTTTGAGCTAA

mRNA sequence

ATGAACCAACGGCAACGTTTCTCCTTCTCCCTCTACCCAACCCATGTCAAGCTTCTTGGTTTCGACTTAAATTCCCTCAACCAAAATTCCTCTTCTAATTCAGTTTCTTTCTCTCGCAAAGCCTATGCCGTTTCCTGTACAGAGATCGTTGGCGTTGTGGTCTTCCGTGACCTGAAACCTAACAGGTTTCTTAAATTCTCCGTTGACGATGGTACTGCCTGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTACTTTGCTTCACGCCATCACCCAGATGTTCGTATTCTGGGAGATATGGCGACCCATTTCGCAGCTCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTATTCTTTGAGCTAA

Coding sequence (CDS)

ATGAACCAACGGCAACGTTTCTCCTTCTCCCTCTACCCAACCCATGTCAAGCTTCTTGGTTTCGACTTAAATTCCCTCAACCAAAATTCCTCTTCTAATTCAGTTTCTTTCTCTCGCAAAGCCTATGCCGTTTCCTGTACAGAGATCGTTGGCGTTGTGGTCTTCCGTGACCTGAAACCTAACAGGTTTCTTAAATTCTCCGTTGACGATGGTACTGCCTGTGTTGGTTGTATCCTGTGGCTAAATCATCTCACATCGTCTTACTTTGCTTCACGCCATCACCCAGATGTTCGTATTCTGGGAGATATGGCGACCCATTTCGCAGCTCAAATTAGGGTTGGGATTGTTGTTAGGGTTCGAGGGAAATTGAGCAGCTATAGGGGAATGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAAGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTATTCTTTGAGCTAA

Protein sequence

MNQRQRFSFSLYPTHVKLLGFDLNSLNQNSSSNSVSFSRKAYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILGDMATHFAAQIRVGIVVRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRYSLS*

Homology

[Close]

BLAST of Chy5G094470 vs. ExPASy Swiss-Prot
Match: Q9LMK5 (CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.8e-34
Identity = 79/151 (52.32%), Postives = 99/151 (65.56%), Query Frame = 0


Query: 10  SLYPTHVKLLGFDLNSLNQN-SSSNSVSFSRKAYAVSCTEIVGVVVFRDLKPNRFLKFSV 69
           SL  TH KL+  D+  L Q+ + SNS S    A  VS  EIVG +V RDL P +FLKF V
Sbjct: 4   SLQSTHAKLVARDIQRLTQSPTESNSFSLLGGA-CVSRVEIVGTIVSRDLTP-KFLKFGV 63

Query: 70  DDGTACVGCILWLNHLTSSYFASRHHPDVRILGDMATHFAAQIRVGIVVRVRGKLSSYRG 129
           DDGT CV C++WLN LTSSYF+      + +L   A   AAQIR+G V RVRG++ SYRG
Sbjct: 64  DDGTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRG 123

Query: 130 MVQITVSDVVVEDDPNAEILHWLDSMRYSLS 160
           ++QIT +  V E DPNAEILHWL+ ++   S
Sbjct: 124 VMQITANVAVAERDPNAEILHWLECLKLGQS 152

[Close]

BLAST of Chy5G094470 vs. ExPASy Swiss-Prot
Match: Q08DB2 (CST complex subunit STN1 OS=Bos taurus OX=9913 GN=STN1 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.8e-04
Identity = 40/148 (27.03%), Postives = 65/148 (43.92%), Query Frame = 0


Query: 17  KLLGFDLNSLNQNSSSNSVSFSRKAYAVSCTEIVGVVVFRDLKPNRFLKFSVDDGTACVG 76
           KL   D+  L ++     V F    + +   +I+G V+    K + F  + VDD T  + 
Sbjct: 28  KLYIRDILDLKESGQVQGV-FFYNGHPIKQVDILGTVIGVREK-DAFYSYGVDDSTGVIN 87

Query: 77  CILW--LNHLTSSYFASRHHPDVRILG--------DMATHFAAQIRVGIVVRVRGKLSSY 136
           CI W  LN+  SS  ++   P  R L                A++ +G ++RVRG +  +
Sbjct: 88  CICWKRLNNTKSS--SATATPSARELSLTSQLKKLQETIAQRAKLEIGDIIRVRGHIRMF 147

Query: 137 RGMVQITVSDVVVEDDP--NAEILHWLD 153
           RG  +I  +     DDP  N +I   L+
Sbjct: 148 RGEREIHATTYYKVDDPVCNVQIARMLE 171

[Close]

BLAST of Chy5G094470 vs. ExPASy TrEMBL
Match: A0A5D3E3H2 (CST complex subunit STN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001150 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.1e-80
Identity = 151/158 (95.57%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 1   MNQRQRFSFSLYPTHVKLLGFDLNSLNQNSSSNSVSFSRKAYAVSCTEIVGVVVFRDLKP 60
           MNQRQRFSFSLY THVKLLGFDLNSLNQNSSS+SVSFSRK YAVSCTEIVGVVVFRDLKP
Sbjct: 1   MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILGDMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL DMATHFAAQIRVGIVVRVR
Sbjct: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 120

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRYSL 159
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR ++
Sbjct: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAM 158

[Close]

BLAST of Chy5G094470 vs. ExPASy TrEMBL
Match: A0A1S3BLT5 (CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.1e-80
Identity = 151/158 (95.57%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 1   MNQRQRFSFSLYPTHVKLLGFDLNSLNQNSSSNSVSFSRKAYAVSCTEIVGVVVFRDLKP 60
           MNQRQRFSFSLY THVKLLGFDLNSLNQNSSS+SVSFSRK YAVSCTEIVGVVVFRDLKP
Sbjct: 51  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 110

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILGDMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL DMATHFAAQIRVGIVVRVR
Sbjct: 111 NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 170

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRYSL 159
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR ++
Sbjct: 171 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAM 208

[Close]

BLAST of Chy5G094470 vs. ExPASy TrEMBL
Match: A0A0A0LNV0 (OB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.6e-78
Identity = 148/158 (93.67%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MNQRQRFSFSLYPTHVKLLGFDLNSLNQNSSSNSVSFSRKAYAVSCTEIVGVVVFRDLKP 60
           MNQR+RFSFSLY THVKLL FDLNSLNQ SSS+SVSFSRK YAVSCTEIVGVVVFRDLKP
Sbjct: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILGDMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH DVRILGDMATHFAAQIRVGIVVRVR
Sbjct: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR 120

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRYSL 159
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR ++
Sbjct: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAM 158

[Close]

BLAST of Chy5G094470 vs. ExPASy TrEMBL
Match: A0A6J1HFA9 (LOW QUALITY PROTEIN: CST complex subunit STN1 OS=Cucurbita moschata OX=3662 GN=LOC111463780 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.0e-66
Identity = 128/161 (79.50%), Postives = 145/161 (90.06%), Query Frame = 0


Query: 1   MNQRQRFSFSLYPTHVKLLGFDLNSLNQ---NSSSNSVSFSRKAYAVSCTEIVGVVVFRD 60
           MNQ++  +FSLY TH+KLLGFDLNSL Q   +SSS++VSFSR+ YAVSC EIVGVVVFRD
Sbjct: 41  MNQQR--AFSLYHTHIKLLGFDLNSLTQSASSSSSDAVSFSRRGYAVSCVEIVGVVVFRD 100

Query: 61  LKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILGDMATHFAAQIRVGIVV 120
           LKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH PDVRI+G+MATHFAAQIRVGIV 
Sbjct: 101 LKPNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVA 160

Query: 121 RVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRYSL 159
           RVRG++SSYRG+VQ+TVSDVVVE+DPNAEILHWLD MR +L
Sbjct: 161 RVRGRVSSYRGVVQMTVSDVVVENDPNAEILHWLDCMRLAL 199

[Close]

BLAST of Chy5G094470 vs. ExPASy TrEMBL
Match: A0A6J1HUX0 (CST complex subunit STN1 OS=Cucurbita maxima OX=3661 GN=LOC111466921 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.1e-64
Identity = 127/157 (80.89%), Postives = 141/157 (89.81%), Query Frame = 0


Query: 1   MNQRQRFSFSLYPTHVKLLGFDLNSLNQNSSSNS---VSFSRKAYAVSCTEIVGVVVFRD 60
           MNQ++  +FSLY TH+KLLGFDLNSL Q+SSS+S   VSFSR+ +AVSC EIVGVVV RD
Sbjct: 19  MNQQR--AFSLYHTHIKLLGFDLNSLTQSSSSSSSDAVSFSRRGFAVSCAEIVGVVVSRD 78

Query: 61  LKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILGDMATHFAAQIRVGIVV 120
           LKPNRFL+FSVDDGT CV CILWLNHLTS YFASRH PDVRI+G+MATHFAAQIRVGIV 
Sbjct: 79  LKPNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVA 138

Query: 121 RVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSM 155
           RVRGK+SSYRG+VQITVSDVVVE+DPNAEILHWLD M
Sbjct: 139 RVRGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCM 173

[Close]

BLAST of Chy5G094470 vs. NCBI nr
Match: KAA0057432.1 (CST complex subunit STN1 [Cucumis melo var. makuwa] >TYK30131.1 CST complex subunit STN1 [Cucumis melo var. makuwa])

HSP 1 Score: 308 bits (788), Expect = 3.23e-105
Identity = 151/158 (95.57%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 1   MNQRQRFSFSLYPTHVKLLGFDLNSLNQNSSSNSVSFSRKAYAVSCTEIVGVVVFRDLKP 60
           MNQRQRFSFSLY THVKLLGFDLNSLNQNSSS+SVSFSRK YAVSCTEIVGVVVFRDLKP
Sbjct: 1   MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILGDMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL DMATHFAAQIRVGIVVRVR
Sbjct: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 120

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRYSL 158
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR ++
Sbjct: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAM 158

[Close]

BLAST of Chy5G094470 vs. NCBI nr
Match: XP_008449339.1 (PREDICTED: CST complex subunit STN1 [Cucumis melo])

HSP 1 Score: 308 bits (788), Expect = 1.83e-104
Identity = 151/158 (95.57%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 1   MNQRQRFSFSLYPTHVKLLGFDLNSLNQNSSSNSVSFSRKAYAVSCTEIVGVVVFRDLKP 60
           MNQRQRFSFSLY THVKLLGFDLNSLNQNSSS+SVSFSRK YAVSCTEIVGVVVFRDLKP
Sbjct: 51  MNQRQRFSFSLYQTHVKLLGFDLNSLNQNSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 110

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILGDMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRIL DMATHFAAQIRVGIVVRVR
Sbjct: 111 NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVVRVR 170

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRYSL 158
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR ++
Sbjct: 171 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAM 208

[Close]

BLAST of Chy5G094470 vs. NCBI nr
Match: XP_004145384.1 (CST complex subunit STN1 [Cucumis sativus] >KGN61681.1 hypothetical protein Csa_006421 [Cucumis sativus])

HSP 1 Score: 301 bits (770), Expect = 1.79e-102
Identity = 148/158 (93.67%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MNQRQRFSFSLYPTHVKLLGFDLNSLNQNSSSNSVSFSRKAYAVSCTEIVGVVVFRDLKP 60
           MNQR+RFSFSLY THVKLL FDLNSLNQ SSS+SVSFSRK YAVSCTEIVGVVVFRDLKP
Sbjct: 1   MNQRRRFSFSLYQTHVKLLAFDLNSLNQTSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKP 60

Query: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILGDMATHFAAQIRVGIVVRVR 120
           NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHH DVRILGDMATHFAAQIRVGIVVRVR
Sbjct: 61  NRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVR 120

Query: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRYSL 158
           GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMR ++
Sbjct: 121 GKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAM 158

[Close]

BLAST of Chy5G094470 vs. NCBI nr
Match: XP_038887265.1 (CST complex subunit STN1 isoform X1 [Benincasa hispida])

HSP 1 Score: 269 bits (687), Expect = 3.47e-89
Identity = 135/163 (82.82%), Postives = 146/163 (89.57%), Query Frame = 0


Query: 1   MNQRQRFSFSLYPTHVKLLGFDLNSLNQNSSSNS----VSFSRKAYAVSCTEIVGVVVFR 60
           MNQRQR S  LY TH+KLLGFD+NSLNQ SSS+S    VSFSR  YAVSC+EIVGVVV  
Sbjct: 19  MNQRQRLS--LYHTHIKLLGFDINSLNQKSSSSSSSDAVSFSRNGYAVSCSEIVGVVVSH 78

Query: 61  DLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILGDMATHFAAQIRVGIV 120
           DLKPNRFLKFSVDDGTACVGCILWLNHLTS YFASRH PDVRI+G++ATHFAAQIRVGIV
Sbjct: 79  DLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNVATHFAAQIRVGIV 138

Query: 121 VRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRYSLS 159
            RVRGKLSSYRG+VQITVSDVVVE+DPNAEILHWLDSMR+ L+
Sbjct: 139 ARVRGKLSSYRGVVQITVSDVVVEEDPNAEILHWLDSMRFRLA 179

[Close]

BLAST of Chy5G094470 vs. NCBI nr
Match: XP_038887266.1 (CST complex subunit STN1 isoform X2 [Benincasa hispida])

HSP 1 Score: 264 bits (674), Expect = 1.93e-87
Identity = 133/158 (84.18%), Postives = 142/158 (89.87%), Query Frame = 0


Query: 1   MNQRQRFSFSLYPTHVKLLGFDLNSLNQNSSSNS----VSFSRKAYAVSCTEIVGVVVFR 60
           MNQRQR S  LY TH+KLLGFD+NSLNQ SSS+S    VSFSR  YAVSC+EIVGVVV  
Sbjct: 19  MNQRQRLS--LYHTHIKLLGFDINSLNQKSSSSSSSDAVSFSRNGYAVSCSEIVGVVVSH 78

Query: 61  DLKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILGDMATHFAAQIRVGIV 120
           DLKPNRFLKFSVDDGTACVGCILWLNHLTS YFASRH PDVRI+G++ATHFAAQIRVGIV
Sbjct: 79  DLKPNRFLKFSVDDGTACVGCILWLNHLTSPYFASRHQPDVRIMGNVATHFAAQIRVGIV 138

Query: 121 VRVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSM 154
            RVRGKLSSYRG+VQITVSDVVVE+DPNAEILHWLDSM
Sbjct: 139 ARVRGKLSSYRGVVQITVSDVVVEEDPNAEILHWLDSM 174

[Close]

BLAST of Chy5G094470 vs. TAIR 10
Match: AT1G07130.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 146.4 bits (368), Expect = 2.0e-35
Identity = 79/151 (52.32%), Postives = 99/151 (65.56%), Query Frame = 0


Query: 10  SLYPTHVKLLGFDLNSLNQN-SSSNSVSFSRKAYAVSCTEIVGVVVFRDLKPNRFLKFSV 69
           SL  TH KL+  D+  L Q+ + SNS S    A  VS  EIVG +V RDL P +FLKF V
Sbjct: 4   SLQSTHAKLVARDIQRLTQSPTESNSFSLLGGA-CVSRVEIVGTIVSRDLTP-KFLKFGV 63

Query: 70  DDGTACVGCILWLNHLTSSYFASRHHPDVRILGDMATHFAAQIRVGIVVRVRGKLSSYRG 129
           DDGT CV C++WLN LTSSYF+      + +L   A   AAQIR+G V RVRG++ SYRG
Sbjct: 64  DDGTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRG 123

Query: 130 MVQITVSDVVVEDDPNAEILHWLDSMRYSLS 160
           ++QIT +  V E DPNAEILHWL+ ++   S
Sbjct: 124 VMQITANVAVAERDPNAEILHWLECLKLGQS 152

The following BLAST results are available for this feature:

BLAST of Chy5G094470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMK5	2.8e-34	52.32	CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1	[more]
Q08DB2	6.8e-04	27.03	CST complex subunit STN1 OS=Bos taurus OX=9913 GN=STN1 PE=2 SV=1	[more]

BLAST of Chy5G094470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E3H2	2.1e-80	95.57	CST complex subunit STN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BLT5	2.1e-80	95.57	CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1	[more]
A0A0A0LNV0	2.6e-78	93.67	OB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=...	[more]
A0A6J1HFA9	5.0e-66	79.50	LOW QUALITY PROTEIN: CST complex subunit STN1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HUX0	2.1e-64	80.89	CST complex subunit STN1 OS=Cucurbita maxima OX=3661 GN=LOC111466921 PE=4 SV=1	[more]

BLAST of Chy5G094470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057432.1	3.23e-105	95.57	CST complex subunit STN1 [Cucumis melo var. makuwa] >TYK30131.1 CST complex subu...	[more]
XP_008449339.1	1.83e-104	95.57	PREDICTED: CST complex subunit STN1 [Cucumis melo]	[more]
XP_004145384.1	1.79e-102	93.67	CST complex subunit STN1 [Cucumis sativus] >KGN61681.1 hypothetical protein Csa_...	[more]
XP_038887265.1	3.47e-89	82.82	CST complex subunit STN1 isoform X1 [Benincasa hispida]	[more]
XP_038887266.1	1.93e-87	84.18	CST complex subunit STN1 isoform X2 [Benincasa hispida]	[more]

BLAST of Chy5G094470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07130.1	2.0e-35	52.32	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004365	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	PFAM	PF01336	tRNA_anti-codon	coord: 49..138 e-value: 5.0E-8 score: 32.8
None	No IPR available	GENE3D	2.40.50.140		coord: 5..159 e-value: 5.4E-24 score: 86.3
None	No IPR available	PANTHER	PTHR13989:SF33	CST COMPLEX SUBUNIT STN1	coord: 10..155
IPR040260	Replication factor A protein-like	PANTHER	PTHR13989	REPLICATION PROTEIN A-RELATED	coord: 10..155
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 48..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy5G094470.1	Chy5G094470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003676	nucleic acid binding