Chy5G093740 (gene) Cucumber (hystrix) v1

Overview
NameChy5G093740
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionDUF4216 domain-containing protein
LocationchrH05: 3325799 .. 3326008 (+)
RNA-Seq ExpressionChy5G093740
SyntenyChy5G093740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTACAGTGTTGAGGGATTTAGATTTTGTATCAAGGATGTTGAGAGAGGAACTGATAATTATCAAAATTACTTTGGTGTATTGCAAGATATTATTGAATTGCATATATGGGTGAATATCAATAGTCTTGGAAAAGGAATTAGAAACGATGATCATGGAATAACTAGTGTGAATGTGACATACACATTTGCTACAAATGAGCCATTT

mRNA sequence

ATGGGGTACAGTGTTGAGGGATTTAGATTTTGTATCAAGGATGTTGAGAGAGGAACTGATAATTATCAAAATTACTTTGGTGTATTGCAAGATATTATTGAATTGCATATATGGGTGAATATCAATAGTCTTGGAAAAGGAATTAGAAACGATGATCATGGAATAACTAGTGTGAATGTGACATACACATTTGCTACAAATGAGCCATTT

Coding sequence (CDS)

ATGGGGTACAGTGTTGAGGGATTTAGATTTTGTATCAAGGATGTTGAGAGAGGAACTGATAATTATCAAAATTACTTTGGTGTATTGCAAGATATTATTGAATTGCATATATGGGTGAATATCAATAGTCTTGGAAAAGGAATTAGAAACGATGATCATGGAATAACTAGTGTGAATGTGACATACACATTTGCTACAAATGAGCCATTT

Protein sequence

MGYSVEGFRFCIKDVERGTDNYQNYFGVLQDIIELHIWVNINSLGKGIRNDDHGITSVNVTYTFATNEPF
Homology
BLAST of Chy5G093740 vs. ExPASy TrEMBL
Match: A0A1S3XBL9 (uncharacterized protein LOC107763345 OS=Nicotiana tabacum OX=4097 GN=LOC107763345 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-07
Identity = 36/95 (37.89%), Postives = 49/95 (51.58%), Query Frame = 0

Query: 2   GYSVEGFRFCIKDVE------------RGTDNYQN--YFGVLQDIIELHI---------- 61
           GY + GFRF  K +E            RG  N QN  Y+GVL +I+EL            
Sbjct: 56  GYEINGFRFHTKQLEGNRVKQNSGVLVRGIMNGQNIDYYGVLTEIVELQYLEGKRIVLFK 115

Query: 62  --WVNINSLGKGIRNDDHGITSVNVTYTFATNEPF 71
             W++++ +GKG++ D HG+ SVN     ATNEPF
Sbjct: 116 CDWMDVDHIGKGVKIDKHGVVSVNTNRKLATNEPF 150

BLAST of Chy5G093740 vs. ExPASy TrEMBL
Match: A0A1S3XB02 (uncharacterized protein LOC107763084 isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107763084 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.7e-05
Identity = 33/95 (34.74%), Postives = 46/95 (48.42%), Query Frame = 0

Query: 2   GYSVEGFRFCIKDVE------------RGTDNYQ--NYFGVLQDIIELHI---------- 61
           GY + GFRF  K +E            RG  N Q  NY+GV+ +I+EL            
Sbjct: 467 GYEINGFRFHTKQLEGNRVRQNSGVLVRGVTNGQNTNYYGVITEIVELQYFEGKRIVLFQ 526

Query: 62  --WVNINSLGKGIRNDDHGITSVNVTYTFATNEPF 71
             W +++ +GKG++ D +   SVN     ATNEPF
Sbjct: 527 CDWWDVDHIGKGVKIDKYDFVSVNTNRKLATNEPF 561

BLAST of Chy5G093740 vs. ExPASy TrEMBL
Match: A0A1S3ZKJ9 (uncharacterized protein LOC107787952 OS=Nicotiana tabacum OX=4097 GN=LOC107787952 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.8e-05
Identity = 34/95 (35.79%), Postives = 45/95 (47.37%), Query Frame = 0

Query: 2   GYSVEGFRFCIKDVE------------RGTDNYQ--NYFGVLQDIIELHI---------- 61
           GY + GF F  K +E            RG  N Q  NY+GVL +I+EL            
Sbjct: 117 GYEINGFWFHTKQLEGNRVRQNSGVLVRGVTNGQNTNYYGVLTEIVELQYFEGKRIVLFK 176

Query: 62  --WVNINSLGKGIRNDDHGITSVNVTYTFATNEPF 71
             W +++ +GKG++ D H   SVN     ATNEPF
Sbjct: 177 CDWWDVDHIGKGVKIDKHEFVSVNTNRKLATNEPF 211

BLAST of Chy5G093740 vs. ExPASy TrEMBL
Match: A0A438IZU0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_025406 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-04
Identity = 32/106 (30.19%), Postives = 51/106 (48.11%), Query Frame = 0

Query: 2   GYSVEGFRFCIKDVERG--TDN-----------------------YQNYFGVLQDIIELH 61
           GY + GFRF I++ E+G  T N                       + +Y+GVL D+IELH
Sbjct: 332 GYIINGFRFHIREREKGKKTQNSGVVVTAEVSSFASARDKNPIPGHVSYYGVLTDVIELH 391

Query: 62  I------------WVNINSLGKGIRNDDHGITSVNVTYTFATNEPF 71
                        W ++ + G+G++ D++G T +N  +T  T+EPF
Sbjct: 392 YLGGNRVILFKCDWWDVINSGRGMKKDEYGFTCLNFEHTICTDEPF 437

BLAST of Chy5G093740 vs. ExPASy TrEMBL
Match: A0A6V7QLV8 (DUF4216 domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS27118 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 33/97 (34.02%), Postives = 47/97 (48.45%), Query Frame = 0

Query: 2   GYSVEGFRFCIKDVERG--TDN--------------YQNYFGVLQDIIELHI-------- 61
           GY + G+RF I+D ++G  T N               Q+Y+GVL ++IEL          
Sbjct: 20  GYLINGYRFQIEDRDKGFKTQNCGVVVVGDTSAETEKQDYYGVLTEVIELQYVGGHRVVL 79

Query: 62  ----WVNINSLGKGIRNDDHGITSVNVTYTFATNEPF 71
               W ++    KGI+ D++GI SVN      TNEPF
Sbjct: 80  FRCNWYDVYDREKGIKTDEYGIVSVNRQRLLKTNEPF 116

BLAST of Chy5G093740 vs. NCBI nr
Match: KAF3956246.1 (hypothetical protein CMV_018610 [Castanea mollissima])

HSP 1 Score: 56.6 bits (135), Expect = 3.53e-07
Identity = 36/95 (37.89%), Postives = 49/95 (51.58%), Query Frame = 0

Query: 2   GYSVEGFRFCIKDVE--RGTDNY------------QNYFGVLQDIIELHI---------- 61
           GY V GFRF   +V+  R T +Y            ++Y+GVL DIIELH           
Sbjct: 169 GYIVNGFRFRKNEVDCSRRTQSYGVLVKGDASTGNRDYYGVLIDIIELHYMGGNKIAMFK 228

Query: 62  --WVNINSLGKGIRNDDHGITSVNVTYTFATNEPF 70
             W +++  G+GI  D +G T VNVT +  +NEPF
Sbjct: 229 CEWSDVDHCGRGIMVDKYGRTLVNVTRSLKSNEPF 263

BLAST of Chy5G093740 vs. NCBI nr
Match: XP_016437311.1 (PREDICTED: uncharacterized protein LOC107763345 [Nicotiana tabacum])

HSP 1 Score: 54.3 bits (129), Expect = 1.67e-06
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 0

Query: 17  RGTDNYQN--YFGVLQDIIELHI------------WVNINSLGKGIRNDDHGITSVNVTY 70
           RG  N QN  Y+GVL +I+EL              W++++ +GKG++ D HG+ SVN   
Sbjct: 83  RGIMNGQNIDYYGVLTEIVELQYLEGKRIVLFKCDWMDVDHIGKGVKIDKHGVVSVNTNR 142

BLAST of Chy5G093740 vs. NCBI nr
Match: XP_021850399.1 (uncharacterized protein LOC110789975 [Spinacia oleracea])

HSP 1 Score: 54.7 bits (130), Expect = 1.71e-06
Identity = 30/95 (31.58%), Postives = 44/95 (46.32%), Query Frame = 0

Query: 2   GYSVEGFRFCIKDVERGTDNYQN--------------YFGVLQDIIELHI---------- 61
           GY   GFRF   D+E+   N  +              Y+GVL DII L            
Sbjct: 897 GYLANGFRFHTSDIEKKRKNQNSGVMVKGIVESKDIDYYGVLNDIISLQYLDGKRVILFR 956

Query: 62  --WVNINSLGKGIRNDDHGITSVNVTYTFATNEPF 70
             W +++ +G+G++ D  G+ SVN  Y + T+EPF
Sbjct: 957 CDWWDVHKIGRGVKIDKGGVVSVNTRYKWNTSEPF 991

BLAST of Chy5G093740 vs. NCBI nr
Match: XP_019266518.1 (PREDICTED: uncharacterized protein LOC109243955 [Nicotiana attenuata])

HSP 1 Score: 54.3 bits (129), Expect = 2.33e-06
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 0

Query: 17  RGTDNYQN--YFGVLQDIIELHI------------WVNINSLGKGIRNDDHGITSVNVTY 70
           RG  N QN  Y+GVL +I+EL              W++++ +GKG++ D HG+ SVN   
Sbjct: 861 RGIMNGQNIDYYGVLTEIVELQYLEGKRIILFKCDWMDVDHIGKGVKIDKHGVVSVNTNR 920

BLAST of Chy5G093740 vs. NCBI nr
Match: CAD1844144.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 53.5 bits (127), Expect = 4.23e-06
Identity = 33/97 (34.02%), Postives = 47/97 (48.45%), Query Frame = 0

Query: 2   GYSVEGFRFCIKDVERG--TDNY--------------QNYFGVLQDIIELHI-------- 61
           GY + G+RF I+D ++G  T N               Q+Y+GVL ++IEL          
Sbjct: 146 GYLINGYRFRIEDRDKGFKTQNCGVVVVGDTGAETEKQDYYGVLTEVIELQYVGGHRVVL 205

Query: 62  ----WVNINSLGKGIRNDDHGITSVNVTYTFATNEPF 70
               W ++    KGI+ D++GI SVN      TNEPF
Sbjct: 206 FRCNWYDVYDREKGIKTDEYGIVSVNRQRLLKTNEPF 242

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3XBL92.3e-0737.89uncharacterized protein LOC107763345 OS=Nicotiana tabacum OX=4097 GN=LOC10776334... [more]
A0A1S3XB023.7e-0534.74uncharacterized protein LOC107763084 isoform X1 OS=Nicotiana tabacum OX=4097 GN=... [more]
A0A1S3ZKJ94.8e-0535.79uncharacterized protein LOC107787952 OS=Nicotiana tabacum OX=4097 GN=LOC10778795... [more]
A0A438IZU01.4e-0430.19Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_025406 PE=4 SV=1[more]
A0A6V7QLV84.1e-0434.02DUF4216 domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN... [more]
Match NameE-valueIdentityDescription
KAF3956246.13.53e-0737.89hypothetical protein CMV_018610 [Castanea mollissima][more]
XP_016437311.11.67e-0641.18PREDICTED: uncharacterized protein LOC107763345 [Nicotiana tabacum][more]
XP_021850399.11.71e-0631.58uncharacterized protein LOC110789975 [Spinacia oleracea][more]
XP_019266518.12.33e-0641.18PREDICTED: uncharacterized protein LOC109243955 [Nicotiana attenuata][more]
CAD1844144.14.23e-0634.02unnamed protein product [Ananas comosus var. bracteatus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy5G093740.1Chy5G093740.1mRNA