Chy5G093330 (gene) Cucumber (hystrix) v1

Overview
NameChy5G093330
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionGATA zinc finger domain-containing protein 10-like isoform X2
LocationchrH05: 2827258 .. 2827994 (+)
RNA-Seq ExpressionChy5G093330
SyntenyChy5G093330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGCAAGAGGAGTTTTGATTAAGCAATTTAATATGGATGTGACTCTACATCACTCAACCAGGAGCGACTGTGGGTCATTTGGTACATATTTAAATACTGAATAATTATTTAAATTATTTACTCATTTAATATTTCTATTTTTTTTACATTTCACAGAGATCGAACAACGCAAGACTTCGTGATGTTACAGATGATCCATAAAAGGTTCTTAATATATGTAATAATAATGAGAGGTACATGGAGGAGAGGAGATACATAATATGTACGATCTACCTACTGTACCTCCACCAATTCATTGGGGACGTGTCCAAGTGGAAGAAGCTGAACTCGATGAAGTTTTCCATAATGTGGAAGAAATGCTTCCTATGACACAGACACAGAGCCAAAACTGGTTTATGGTACTTCAATGATGATGATGTCAATATTTGGAGCAGAATATTGTGATTATGAGATCGGTTTATGGTACTTTATGGTACTGGTTTATGGTACTTCAGGGGTCGGTCCATCGTCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCATGGACACAGACGTGGCCATGGAGAACATAACAAATATATGTATTATGAAGCACTTGTAGAGGTATTAGATCAACAAGAGTACTAACAAGAACCAGAGAACCAAGAGGAGCTAGAACAACATAGAGTTTAGAGTCGACGACGACAACTAGCTCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA

mRNA sequence

AAGGCAAGAGGAGTTTTGATTAAGCAATTTAATATGGATGTGACTCTACATCACTCAACCAGGAGCGACTGTGGGTCATTTGAGATCGAACAACGCAAGACTTCGTGATGTTACAGATGATCCATAAAAGAGGAGATACATAATATGTACGATCTACCTACTGTACCTCCACCAATTCATTGGGGACGTGTCCAAGTGGAAGAAGCTGAACTCGATGAAGTTTTCCATAATGTGGAAGAAATGCTTCCTATGACACAGACACAGAGCCAAAACTGGTTTATGGTACTTCAATGATGATGATGTCAATATTTGGAGCAGAATATTGTGATTATGAGATCGGTTTATGGTACTTTATGGTACTGGTTTATGGTACTTCAGGGGTCGGTCCATCGTCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCATGGACACAGACGTGGCCATGGAGAACATAACAAATATATGTATTATGAAGCACTTGTAGAGGTATTAGATCAACAAGAGTACTAACAAGAACCAGAGAACCAAGAGGAGCTAGAACAACATAGAGTTTAGAGTCGACGACGACAACTAGCTCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA

Coding sequence (CDS)

AAGGCAAGAGGAGTTTTGATTAAGCAATTTAATATGGATGTGACTCTACATCACTCAACCAGGAGCGACTGTGGGTCATTTGAGATCGAACAACGCAAGACTTCGTGATGTTACAGATGATCCATAAAAGAGGAGATACATAATATGTACGATCTACCTACTGTACCTCCACCAATTCATTGGGGACGTGTCCAAGTGGAAGAAGCTGAACTCGATGAAGTTTTCCATAATGTGGAAGAAATGCTTCCTATGACACAGACACAGAGCCAAAACTGGTTTATGGTACTTCAATGATGATGATGTCAATATTTGGAGCAGAATATTGTGATTATGAGATCGGTTTATGGTACTTTATGGTACTGGTTTATGGTACTTCAGGGGTCGGTCCATCGTCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCATGGACACAGACGTGGCCATGGAGAACATAACAAATATATGTATTATGAAGCACTTGTAGAGGTATTAGATCAACAAGAGTACTAACAAGAACCAGAGAACCAAGAGGAGCTAGAACAACATAGAGTTTAGAGTCGACGACGACAACTAGCTCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA

Protein sequence

KARGVLIKQFNMDVTLHHSTRSDCGSFEIEQRKTS*CYR*SIKEEIHNMYDLPTVPPPIHWGRVQVEEAELDEVFHNVEEMLPMTQTQSQNWFMVLQ***CQYLEQNIVIMRSVYGTLWYWFMVLQGSVHRLHTWMSVHQLLTCMDTDVAMENITNICIMKHL*RY*INKSTNKNQRTKRS*NNIEFRVDDDN*LEIDDVRVVEHIX
Homology
[Close]
BLAST of Chy5G093330 vs. ExPASy TrEMBL
Match: A0A5D3C2V9 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001060 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 6.3e-45
Identity = 105/163 (64.42%), Postives = 119/163 (73.01%), Query Frame = 0 

Query: 44  EEIHNMYDLPTVPPPIHWGRVQVEEAELDEVFHNVEEMLPMTQTQSQNWFMVLQ***CQY 103
           EEIHNMY++  VP P+H  RV+VEEAELDEV+HNVEE+   TQTQSQ  +  L       
Sbjct: 65  EEIHNMYNVSIVPLPVHRARVRVEEAELDEVYHNVEEVPHTTQTQSQTSYGSLM-TMMPT 124

Query: 104 LEQNIVIMRSVYGTLWYWFMVLQGSVHRLHTWMSVHQLLTCMDTDVAMENITNICIMKHL 163
                VI+RSV         ++  S+HRLHTWMSVHQLLTCMDTDVAM NI NICIMKHL
Sbjct: 125 FGVGFVILRSVED-------IMMQSIHRLHTWMSVHQLLTCMDTDVAMGNIMNICIMKHL 184

Query: 164 *RY*INKSTNKNQRTKRS*NNIEFRVDDDN*LEIDDVRVVEHI 207
             Y I+KSTNKNQRTKR+ NNIE RVD +N LEIDDVRVVEHI
Sbjct: 185 QMYQIDKSTNKNQRTKRTENNIELRVDVNNQLEIDDVRVVEHI 219

[Close]
BLAST of Chy5G093330 vs. ExPASy TrEMBL
Match: A0A5A7VF64 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00200 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.3e-39
Identity = 94/157 (59.87%), Postives = 107/157 (68.15%), Query Frame = 0 

Query: 44  EEIHNMYDLPTVPPPIHWGRVQVEEAELDEVFHNVEEMLPMTQTQSQNWFMVLQ***CQY 103
           +EIHNMYDLP VPP +H GRV+VEE ELDEV+HN                          
Sbjct: 69  KEIHNMYDLPIVPPLVHRGRVRVEEDELDEVYHN-------------------------- 128

Query: 104 LEQNIVIMRSVYGTLWYWFMVLQGSVHRLHTWMSVHQLLTCMDTDVAMENITNICIMKHL 163
              +IVI+RS+        +++QGSVHRLHTWMSVH +LTCMD DVAM NITNICIMKHL
Sbjct: 129 ---DIVILRSIQD------IMMQGSVHRLHTWMSVHLILTCMDMDVAMGNITNICIMKHL 188

Query: 164 *RY*INKSTNKNQRTKRS*NNIEFRVDDDN*LEIDDV 201
             Y I+KSTNKNQRTKR+ NNIEFRVD DN LEIDDV
Sbjct: 189 QMYQIDKSTNKNQRTKRTENNIEFRVDVDNQLEIDDV 190

[Close]
BLAST of Chy5G093330 vs. ExPASy TrEMBL
Match: A0A5D3CD18 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00530 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 5.9e-27
Identity = 73/142 (51.41%), Postives = 79/142 (55.63%), Query Frame = 0 

Query: 44  EEIHNMYDLPTVPPPIHWGRVQVEEAELDEVFHNVEEMLPMTQTQSQNWFMVLQ***CQY 103
           EEIHNMYDLP VPPP+H GRV+VEEAELDE                              
Sbjct: 58  EEIHNMYDLPIVPPPVHRGRVRVEEAELDE------------------------------ 117

Query: 104 LEQNIVIMRSVYGTLWYWFMVLQGSVHRLHTWMSVHQLLTCMDTDVAMENITNICIMKHL 163
                                  GS+H LHTWMSVHQLLTCMD DV M NITNICIMKHL
Sbjct: 118 -----------------------GSIHHLHTWMSVHQLLTCMDMDVTMGNITNICIMKHL 146

Query: 164 *RY*INKSTNKNQRTKRS*NNI 186
             Y I+KSTNKNQRTKR+ N+I
Sbjct: 178 QMYQIDKSTNKNQRTKRTENHI 146

[Close]
BLAST of Chy5G093330 vs. ExPASy TrEMBL
Match: A0A5A7VBU8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G001370 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 5.9e-27
Identity = 73/142 (51.41%), Postives = 79/142 (55.63%), Query Frame = 0 

Query: 44  EEIHNMYDLPTVPPPIHWGRVQVEEAELDEVFHNVEEMLPMTQTQSQNWFMVLQ***CQY 103
           EEIHNMYDLP VPPP+H GRV+VEEAELDE                              
Sbjct: 54  EEIHNMYDLPIVPPPVHRGRVRVEEAELDE------------------------------ 113

Query: 104 LEQNIVIMRSVYGTLWYWFMVLQGSVHRLHTWMSVHQLLTCMDTDVAMENITNICIMKHL 163
                                  GS+H LHTWMSVHQLLTCMD DV M NITNICIMKHL
Sbjct: 114 -----------------------GSIHHLHTWMSVHQLLTCMDMDVTMGNITNICIMKHL 142

Query: 164 *RY*INKSTNKNQRTKRS*NNI 186
             Y I+KSTNKNQRTKR+ N+I
Sbjct: 174 QMYQIDKSTNKNQRTKRTENHI 142

[Close]
BLAST of Chy5G093330 vs. ExPASy TrEMBL
Match: A0A5A7TDY5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00990 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 8.5e-26
Identity = 79/162 (48.77%), Postives = 101/162 (62.35%), Query Frame = 0 

Query: 50  YDLPTVPPPIHWGRVQVEEAELDEVFHNVEEMLPMTQTQSQNWF----MVLQ***CQYLE 109
           +D+      IHWGRV+VEEAELDEV+HNVEE+ P TQTQSQ  +     ++      Y +
Sbjct: 259 FDMDVTQEYIHWGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCD 318

Query: 110 QNIVIMRSVYGTLWYWFMVLQGSVHRLHTWMSVHQLLTCM-DTDVAMENITNICIMKHL* 169
             +       GT +Y        +  L ++M V    + M     A+ NITNICIMKHL 
Sbjct: 319 SEV-------GTGYY-----DAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHLQ 378

Query: 170 RY*INKSTNKNQRTKRS*NNIEFRVDDDN*LEIDDVRVVEHI 207
            Y I+KSTNKNQRTKR+ NNIEFRV+ DN L+ID+V+VVEHI
Sbjct: 379 MYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEVQVVEHI 408

[Close]
BLAST of Chy5G093330 vs. NCBI nr
Match: KAA0040602.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK05644.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (486), Expect = 1.35e-57
Identity = 105/166 (63.25%), Postives = 120/166 (72.29%), Query Frame = 0 

Query: 44  EEIHNMYDLPTVPPPIHWGRVQVEEAELDEVFHNVEEMLPMTQTQSQNWF---MVLQ*** 103
           EEIHNMY++  VP P+H  RV+VEEAELDEV+HNVEE+   TQTQSQ  +   M +    
Sbjct: 65  EEIHNMYNVSIVPLPVHRARVRVEEAELDEVYHNVEEVPHTTQTQSQTSYGSLMTMM--- 124

Query: 104 CQYLEQNIVIMRSVYGTLWYWFMVLQGSVHRLHTWMSVHQLLTCMDTDVAMENITNICIM 163
                   VI+RSV         ++  S+HRLHTWMSVHQLLTCMDTDVAM NI NICIM
Sbjct: 125 -PTFGVGFVILRSVED-------IMMQSIHRLHTWMSVHQLLTCMDTDVAMGNIMNICIM 184

Query: 164 KHL*RY*INKSTNKNQRTKRS*NNIEFRVDDDN*LEIDDVRVVEHI 206
           KHL  Y I+KSTNKNQRTKR+ NNIE RVD +N LEIDDVRVVEHI
Sbjct: 185 KHLQMYQIDKSTNKNQRTKRTENNIELRVDVNNQLEIDDVRVVEHI 219

[Close]
BLAST of Chy5G093330 vs. NCBI nr
Match: KAA0066693.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK27843.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (437), Expect = 9.90e-51
Identity = 94/157 (59.87%), Postives = 106/157 (67.52%), Query Frame = 0 

Query: 44  EEIHNMYDLPTVPPPIHWGRVQVEEAELDEVFHNVEEMLPMTQTQSQNWFMVLQ***CQY 103
           +EIHNMYDLP VPP +H GRV+VEE ELDEV+HN                          
Sbjct: 69  KEIHNMYDLPIVPPLVHRGRVRVEEDELDEVYHN-------------------------- 128

Query: 104 LEQNIVIMRSVYGTLWYWFMVLQGSVHRLHTWMSVHQLLTCMDTDVAMENITNICIMKHL 163
              +IVI+RS+   +      +QGSVHRLHTWMSVH +LTCMD DVAM NITNICIMKHL
Sbjct: 129 ---DIVILRSIQDIM------MQGSVHRLHTWMSVHLILTCMDMDVAMGNITNICIMKHL 188

Query: 164 *RY*INKSTNKNQRTKRS*NNIEFRVDDDN*LEIDDV 200
             Y I+KSTNKNQRTKR+ NNIEFRVD DN LEIDDV
Sbjct: 189 QMYQIDKSTNKNQRTKRTENNIEFRVDVDNQLEIDDV 190

[Close]
BLAST of Chy5G093330 vs. NCBI nr
Match: KAA0065673.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 131 bits (330), Expect = 3.36e-35
Identity = 73/142 (51.41%), Postives = 79/142 (55.63%), Query Frame = 0 

Query: 44  EEIHNMYDLPTVPPPIHWGRVQVEEAELDEVFHNVEEMLPMTQTQSQNWFMVLQ***CQY 103
           EEIHNMYDLP VPPP+H GRV+VEEAELDE                              
Sbjct: 54  EEIHNMYDLPIVPPPVHRGRVRVEEAELDE------------------------------ 113

Query: 104 LEQNIVIMRSVYGTLWYWFMVLQGSVHRLHTWMSVHQLLTCMDTDVAMENITNICIMKHL 163
                                  GS+H LHTWMSVHQLLTCMD DV M NITNICIMKHL
Sbjct: 114 -----------------------GSIHHLHTWMSVHQLLTCMDMDVTMGNITNICIMKHL 142

Query: 164 *RY*INKSTNKNQRTKRS*NNI 185
             Y I+KSTNKNQRTKR+ N+I
Sbjct: 174 QMYQIDKSTNKNQRTKRTENHI 142

[Close]
BLAST of Chy5G093330 vs. NCBI nr
Match: TYK08229.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 131 bits (330), Expect = 3.79e-35
Identity = 73/142 (51.41%), Postives = 79/142 (55.63%), Query Frame = 0 

Query: 44  EEIHNMYDLPTVPPPIHWGRVQVEEAELDEVFHNVEEMLPMTQTQSQNWFMVLQ***CQY 103
           EEIHNMYDLP VPPP+H GRV+VEEAELDE                              
Sbjct: 58  EEIHNMYDLPIVPPPVHRGRVRVEEAELDE------------------------------ 117

Query: 104 LEQNIVIMRSVYGTLWYWFMVLQGSVHRLHTWMSVHQLLTCMDTDVAMENITNICIMKHL 163
                                  GS+H LHTWMSVHQLLTCMD DV M NITNICIMKHL
Sbjct: 118 -----------------------GSIHHLHTWMSVHQLLTCMDMDVTMGNITNICIMKHL 146

Query: 164 *RY*INKSTNKNQRTKRS*NNI 185
             Y I+KSTNKNQRTKR+ N+I
Sbjct: 178 QMYQIDKSTNKNQRTKRTENHI 146

[Close]
BLAST of Chy5G093330 vs. NCBI nr
Match: KAA0041168.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (322), Expect = 2.85e-31
Identity = 79/162 (48.77%), Postives = 101/162 (62.35%), Query Frame = 0 

Query: 50  YDLPTVPPPIHWGRVQVEEAELDEVFHNVEEMLPMTQTQSQNWF----MVLQ***CQYLE 109
           +D+      IHWGRV+VEEAELDEV+HNVEE+ P TQTQSQ  +     ++      Y +
Sbjct: 259 FDMDVTQEYIHWGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCD 318

Query: 110 QNIVIMRSVYGTLWYWFMVLQGSVHRLHTWMSVHQLLTCMDTDV-AMENITNICIMKHL* 169
             +       GT +Y        +  L ++M V    + M     A+ NITNICIMKHL 
Sbjct: 319 SEV-------GTGYY-----DAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHLQ 378

Query: 170 RY*INKSTNKNQRTKRS*NNIEFRVDDDN*LEIDDVRVVEHI 206
            Y I+KSTNKNQRTKR+ NNIEFRV+ DN L+ID+V+VVEHI
Sbjct: 379 MYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEVQVVEHI 408

The following BLAST results are available for this feature:
BLAST of Chy5G093330 vs.
Match NameE-valueIdentityDescription
BLAST of Chy5G093330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C2V96.3e-4564.42Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7VF642.3e-3959.87Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3CD185.9e-2751.41GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7VBU85.9e-2751.41GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7TDY58.5e-2648.77Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
BLAST of Chy5G093330 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040602.11.35e-5763.25mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0066693.19.90e-5159.87mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0065673.13.36e-3551.41GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
TYK08229.13.79e-3551.41GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0041168.12.85e-3148.77serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
BLAST of Chy5G093330 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy5G093330.1Chy5G093330.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance