Chy5G093210 (gene) Cucumber (hystrix) v1

Overview


Name	Chy5G093210
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	late embryogenesis abundant protein 1-like
Location	chrH05: 2572218 .. 2573106 (+)
RNA-Seq Expression	Chy5G093210
Synteny	Chy5G093210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCACCAAATTAGGTCCAACAAATGAACCAAGAGACATGTCTAGTAATTCAGCTCAAGCTCAACTATGTGCTAATTCTGCTCAACACTCTACTCACCAACATGATCAAGAACCCAATAGTTTTCTCCAACAGGTAATACTTCTAAAATGCATTTAATCATTCCAACAAATTTTTAATACTATGAAAAGTGTATTTTGTGTTTGATACTGAAATTCGGTATCAAACAAATAAATGCCTACAAAATAGAAAAAACTTGCACCGATGTGGTGCTTGACCATCAACAATCTGACAATCAAGTCCCTCTAACTGTTTAAAGAGGTCTAGAGAGTATAAAAGTTAATAGGTATTTCAATGTCCATTAAATGACATATCATTGTCCTCTTGATTTATAAGAAATAAGTCTTGTACCGGTTATTTCTAATTAATCCTTGGGTAATTAATTAAGTTGTTACTTAGTGACACAAGCATGTGCAAAAGTAAAACACTTCACCAAGTCTTTGCTGTCATAAGTTTGACCCCTATACTTAGATACTATGACTTGACGGCCGACCATCCTGTATACGAGTCGGTCTTCCAAACTTCTATACTCTTCAACTCTCTCTAAACCATTATTAACTTGATCGTCGGAATGTTGGTGTGGCCAAGCAACATATTGGTTCAAGTTTTTCTATTTTGAATAGCATTTGTTTGATTCTCTTTCTAAGATTACAAATTTACCGTTTGATACCAAATTTCAGAATGAACAAATTCAACGTTGATTTTTTTACATAATTTGGTTTGTAATGTTGTAATTTTGTTGCAGACTGGAGAGAAGATGGTTCACATGGCTCAGGGTGCTGTGGACACAGTGAAGGAAACGCTTGGAATGGGTGACAAGAAATGA

mRNA sequence

ATGGAAGCCACCAAATTAGGTCCAACAAATGAACCAAGAGACATGTCTAGTAATTCAGCTCAAGCTCAACTATGTGCTAATTCTGCTCAACACTCTACTCACCAACATGATCAAGAACCCAATAGTTTTCTCCAACAGACTGGAGAGAAGATGGTTCACATGGCTCAGGGTGCTGTGGACACAGTGAAGGAAACGCTTGGAATGGGTGACAAGAAATGA

Coding sequence (CDS)

ATGGAAGCCACCAAATTAGGTCCAACAAATGAACCAAGAGACATGTCTAGTAATTCAGCTCAAGCTCAACTATGTGCTAATTCTGCTCAACACTCTACTCACCAACATGATCAAGAACCCAATAGTTTTCTCCAACAGACTGGAGAGAAGATGGTTCACATGGCTCAGGGTGCTGTGGACACAGTGAAGGAAACGCTTGGAATGGGTGACAAGAAATGA

Protein sequence

MEATKLGPTNEPRDMSSNSAQAQLCANSAQHSTHQHDQEPNSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK*

Homology

[Close]

BLAST of Chy5G093210 vs. ExPASy TrEMBL
Match: A0A0A0LI39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G169690 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.5e-30
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MEATKLGPTNEPRDMSSNSAQAQLCANSAQHSTHQHDQEPNSFLQQTGEKMVHMAQGAVD 60
          MEATKLGPTNEP DMSSNSAQAQLCANSAQHSTHQHDQEPNS LQQTGEKMVHMAQGAVD
Sbjct: 25 MEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQHDQEPNSLLQQTGEKMVHMAQGAVD 84

Query: 61 TVKETLGMGDKK 73
          TVKETLGMGDKK
Sbjct: 85 TVKETLGMGDKK 96

[Close]

BLAST of Chy5G093210 vs. ExPASy TrEMBL
Match: A0A5A7SQZ2 (Late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00540 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.2e-29
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MEATKLGPTNEPRDMSSNSAQAQLCANSAQHSTHQHDQEPNSFLQQTGEKMVHMAQGAVD 60
          MEATKLGPT+EPRDMSSNSAQAQLCANSAQHSTHQ DQEP SFLQQTGEKMVHMAQGAVD
Sbjct: 25 MEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFLQQTGEKMVHMAQGAVD 84

Query: 61 TVKETLGMGDKK 73
          TVKETLGMGDKK
Sbjct: 85 TVKETLGMGDKK 96

[Close]

BLAST of Chy5G093210 vs. ExPASy TrEMBL
Match: A0A1S4E2Z2 (late embryogenesis abundant protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499473 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.2e-29
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MEATKLGPTNEPRDMSSNSAQAQLCANSAQHSTHQHDQEPNSFLQQTGEKMVHMAQGAVD 60
          MEATKLGPT+EPRDMSSNSAQAQLCANSAQHSTHQ DQEP SFLQQTGEKMVHMAQGAVD
Sbjct: 14 MEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFLQQTGEKMVHMAQGAVD 73

Query: 61 TVKETLGMGDKK 73
          TVKETLGMGDKK
Sbjct: 74 TVKETLGMGDKK 85

[Close]

BLAST of Chy5G093210 vs. ExPASy TrEMBL
Match: A0A1S3CCL5 (late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499473 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.2e-29
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1   MEATKLGPTNEPRDMSSNSAQAQLCANSAQHSTHQHDQEPNSFLQQTGEKMVHMAQGAVD 60
           MEATKLGPT+EPRDMSSNSAQAQLCANSAQHSTHQ DQEP SFLQQTGEKMVHMAQGAVD
Sbjct: 73  MEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFLQQTGEKMVHMAQGAVD 132

Query: 61  TVKETLGMGDKK 73
           TVKETLGMGDKK
Sbjct: 133 TVKETLGMGDKK 144

[Close]

BLAST of Chy5G093210 vs. ExPASy TrEMBL
Match: A0A6J1KN05 (late embryogenesis abundant protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111494812 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.2e-12
Identity = 49/73 (67.12%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 1  MEATKLGPTNEPRD-MSSNSAQAQLCANSAQHSTHQHDQEPNSFLQQTGEKMVHMAQGAV 60
          MEAT+    NEPRD + ++SAQAQL       S H   QEP +FLQQTGEKMVHMAQ AV
Sbjct: 25 MEATQ-STGNEPRDILPTDSAQAQL-------SAHHDKQEPTTFLQQTGEKMVHMAQDAV 84

Query: 61 DTVKETLGMGDKK 73
          DTVKETLGMGDKK
Sbjct: 85 DTVKETLGMGDKK 89

[Close]

BLAST of Chy5G093210 vs. NCBI nr
Match: XP_011649123.1 (late embryogenesis abundant protein D-7 [Cucumis sativus] >KGN61545.1 hypothetical protein Csa_005950 [Cucumis sativus])

HSP 1 Score: 139 bits (350), Expect = 5.24e-41
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MEATKLGPTNEPRDMSSNSAQAQLCANSAQHSTHQHDQEPNSFLQQTGEKMVHMAQGAVD 60
          MEATKLGPTNEP DMSSNSAQAQLCANSAQHSTHQHDQEPNS LQQTGEKMVHMAQGAVD
Sbjct: 25 MEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQHDQEPNSLLQQTGEKMVHMAQGAVD 84

Query: 61 TVKETLGMGDKK 72
          TVKETLGMGDKK
Sbjct: 85 TVKETLGMGDKK 96

[Close]

BLAST of Chy5G093210 vs. NCBI nr
Match: XP_016902588.1 (PREDICTED: late embryogenesis abundant protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 137 bits (344), Expect = 3.11e-40
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MEATKLGPTNEPRDMSSNSAQAQLCANSAQHSTHQHDQEPNSFLQQTGEKMVHMAQGAVD 60
          MEATKLGPT+EPRDMSSNSAQAQLCANSAQHSTHQ DQEP SFLQQTGEKMVHMAQGAVD
Sbjct: 14 MEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFLQQTGEKMVHMAQGAVD 73

Query: 61 TVKETLGMGDKK 72
          TVKETLGMGDKK
Sbjct: 74 TVKETLGMGDKK 85

[Close]

BLAST of Chy5G093210 vs. NCBI nr
Match: KAA0031971.1 (late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa] >TYK16791.1 late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (344), Expect = 4.31e-40
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MEATKLGPTNEPRDMSSNSAQAQLCANSAQHSTHQHDQEPNSFLQQTGEKMVHMAQGAVD 60
          MEATKLGPT+EPRDMSSNSAQAQLCANSAQHSTHQ DQEP SFLQQTGEKMVHMAQGAVD
Sbjct: 25 MEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFLQQTGEKMVHMAQGAVD 84

Query: 61 TVKETLGMGDKK 72
          TVKETLGMGDKK
Sbjct: 85 TVKETLGMGDKK 96

[Close]

BLAST of Chy5G093210 vs. NCBI nr
Match: XP_008460707.2 (PREDICTED: late embryogenesis abundant protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 137 bits (344), Expect = 1.85e-39
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1   MEATKLGPTNEPRDMSSNSAQAQLCANSAQHSTHQHDQEPNSFLQQTGEKMVHMAQGAVD 60
           MEATKLGPT+EPRDMSSNSAQAQLCANSAQHSTHQ DQEP SFLQQTGEKMVHMAQGAVD
Sbjct: 73  MEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFLQQTGEKMVHMAQGAVD 132

Query: 61  TVKETLGMGDKK 72
           TVKETLGMGDKK
Sbjct: 133 TVKETLGMGDKK 144

[Close]

BLAST of Chy5G093210 vs. NCBI nr
Match: XP_023000573.1 (late embryogenesis abundant protein 1-like [Cucurbita maxima])

HSP 1 Score: 80.9 bits (198), Expect = 6.27e-18
Identity = 49/73 (67.12%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 1  MEATKLGPTNEPRD-MSSNSAQAQLCANSAQHSTHQHDQEPNSFLQQTGEKMVHMAQGAV 60
          MEAT+    NEPRD + ++SAQAQL A       H   QEP +FLQQTGEKMVHMAQ AV
Sbjct: 25 MEATQ-STGNEPRDILPTDSAQAQLSA-------HHDKQEPTTFLQQTGEKMVHMAQDAV 84

Query: 61 DTVKETLGMGDKK 72
          DTVKETLGMGDKK
Sbjct: 85 DTVKETLGMGDKK 89

[Close]

BLAST of Chy5G093210 vs. TAIR 10
Match: AT4G13560.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 40.4 bits (93), Expect = 7.1e-04
Identity = 20/47 (42.55%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 26  ANSAQHSTHQHDQEPNSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 73
           ++SA  S   + ++      QTGE + +MAQGA+D VK +LGM +KK
Sbjct: 63  SHSANKSAQHNQEQAAGLFGQTGESVKNMAQGALDGVKNSLGMNEKK 109

The following BLAST results are available for this feature:

BLAST of Chy5G093210 vs.


Match Name	E-value	Identity	Description

BLAST of Chy5G093210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI39	4.5e-30	97.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G169690 PE=4 SV=1	[more]
A0A5A7SQZ2	2.2e-29	95.83	Late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S4E2Z2	2.2e-29	95.83	late embryogenesis abundant protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A1S3CCL5	2.2e-29	95.83	late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1KN05	3.2e-12	67.12	late embryogenesis abundant protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of Chy5G093210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649123.1	5.24e-41	97.22	late embryogenesis abundant protein D-7 [Cucumis sativus] >KGN61545.1 hypothetic...	[more]
XP_016902588.1	3.11e-40	95.83	PREDICTED: late embryogenesis abundant protein 1 isoform X2 [Cucumis melo]	[more]
KAA0031971.1	4.31e-40	95.83	late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa] >TYK...	[more]
XP_008460707.2	1.85e-39	95.83	PREDICTED: late embryogenesis abundant protein 1 isoform X1 [Cucumis melo]	[more]
XP_023000573.1	6.27e-18	67.12	late embryogenesis abundant protein 1-like [Cucurbita maxima]	[more]

BLAST of Chy5G093210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13560.1	7.1e-04	42.55	Late embryogenesis abundant protein (LEA) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR34191:SF20	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 17..71
IPR039624	Stress-induced protein KIN1/KIN2	PANTHER	PTHR34191	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 17..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy5G093210.1	Chy5G093210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004471	malate dehydrogenase (decarboxylating) (NAD+) activity