Chy5G090900 (gene) Cucumber (hystrix) v1

Overview
NameChy5G090900
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionRibosomal protein L11
LocationchrH05: 300519 .. 300986 (+)
RNA-Seq ExpressionChy5G090900
SyntenyChy5G090900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCTTGAAAGAGATTCTGACCAGACGACCCGTCGCTGCCACGATCAGGCTCACCGTCCCTGCTGGTGGAGCTCGCCCTGCGCCACCGGTGGGTCCAGCGCTTGGTCAATACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAACCTGACACGCCCATGGCCGTAACCATTACAGCTTTCAAGGACAACACCTTCGAGTTCACCGTCAAATCACCGTCAGTTACTTGGTACTTGAAGAAAGCTGCTGGGATTGAATCTGGGAGCAGCCGCCCAGGCCACGTAGTCGCCTCCACGCTCTCAGTCAAGCACATTTATGAGATCGCTAAAGTCAAGCAATCTGATCCTTATTGCCAGTACATGCCACTAGAATCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAAGTCCTTAACGAATTGGAGTAA

mRNA sequence

ATGGCCACCTTGAAAGAGATTCTGACCAGACGACCCGTCGCTGCCACGATCAGGCTCACCGTCCCTGCTGGTGGAGCTCGCCCTGCGCCACCGGTGGGTCCAGCGCTTGGTCAATACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAACCTGACACGCCCATGGCCGTAACCATTACAGCTTTCAAGGACAACACCTTCGAGTTCACCGTCAAATCACCGTCAGTTACTTGGTACTTGAAGAAAGCTGCTGGGATTGAATCTGGGAGCAGCCGCCCAGGCCACGTAGTCGCCTCCACGCTCTCAGTCAAGCACATTTATGAGATCGCTAAAGTCAAGCAATCTGATCCTTATTGCCAGTACATGCCACTAGAATCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAAGTCCTTAACGAATTGGAGTAA

Coding sequence (CDS)

ATGGCCACCTTGAAAGAGATTCTGACCAGACGACCCGTCGCTGCCACGATCAGGCTCACCGTCCCTGCTGGTGGAGCTCGCCCTGCGCCACCGGTGGGTCCAGCGCTTGGTCAATACCGGCTGAATCTGATGGCTTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAACCTGACACGCCCATGGCCGTAACCATTACAGCTTTCAAGGACAACACCTTCGAGTTCACCGTCAAATCACCGTCAGTTACTTGGTACTTGAAGAAAGCTGCTGGGATTGAATCTGGGAGCAGCCGCCCAGGCCACGTAGTCGCCTCCACGCTCTCAGTCAAGCACATTTATGAGATCGCTAAAGTCAAGCAATCTGATCCTTATTGCCAGTACATGCCACTAGAATCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAAGTCCTTAACGAATTGGAGTAA

Protein sequence

MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE*
Homology
[Close]
BLAST of Chy5G090900 vs. ExPASy Swiss-Prot
Match: Q9UTK2 (54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl19 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.1e-34
Identity = 70/135 (51.85%), Postives = 91/135 (67.41%), Query Frame = 0 

Query: 17  IRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAFKDNTFE 76
           I+L VPAG A P PP+GPALG   L  + FCK+FNART  + P+TP+   IT     TF 
Sbjct: 9   IKLIVPAGKATPTPPIGPALGARGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFT 68

Query: 77  FTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYMPLESIC 136
           FT+ +P  +W + K   +E GSS P H +   LS+KHIYEIAK+K +DP  Q + L S+C
Sbjct: 69  FTIHTPPTSWLISKTLDLEKGSSSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSLC 128

Query: 137 KSIIGTANSMGIKVL 152
           KS+IGTA SMG+KV+
Sbjct: 129 KSVIGTAKSMGVKVV 143

[Close]
BLAST of Chy5G090900 vs. ExPASy Swiss-Prot
Match: O67758 (50S ribosomal protein L11 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rplK PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.1e-29
Identity = 66/140 (47.14%), Postives = 94/140 (67.14%), Query Frame = 0 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + V ATI L +PA  A PAPPVGPALGQ+ +N+M F K FNA ++ Y+P T + V IT +
Sbjct: 3   KKVVATIELMLPAQQASPAPPVGPALGQHGVNIMEFVKQFNAASRDYEPGTILPVVITVY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYM 130
           +D +F F +K+P V++ LKKAAG+E GSS P  V    ++VK + EIAK+K  D      
Sbjct: 63  QDRSFTFIMKTPPVSYLLKKAAGVEKGSSDPKRVKVGKITVKQLEEIAKMKMKD--MNTR 122

Query: 131 PLESICKSIIGTANSMGIKV 151
            L++  +++ GTA SMGI++
Sbjct: 123 DLKAAMRTVAGTAKSMGIEI 140

[Close]
BLAST of Chy5G090900 vs. ExPASy Swiss-Prot
Match: Q07KJ7 (50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisA53) OX=316055 GN=rplK PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.1e-29
Identity = 65/140 (46.43%), Postives = 95/140 (67.86%), Query Frame = 0 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + V   ++L VPAG A P+PP+GPALGQ  LN+M FCK+FNA+TQK + +TP+ V IT +
Sbjct: 3   KKVTGYLKLQVPAGAANPSPPIGPALGQRGLNIMEFCKNFNAQTQKEEKNTPIPVVITIY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P ++++LK+AA I+SGS  PG  VA  +S   + EIA+ K  D  C   
Sbjct: 63  ADRSFTFEMKTPPMSFFLKQAAKIQSGSKLPGRDVAGKVSSAQVREIAERKMKDLNCD-- 122

Query: 131 PLESICKSIIGTANSMGIKV 151
            +ES  + + G+A SMG++V
Sbjct: 123 SIESAMRMVEGSARSMGLQV 140

[Close]
BLAST of Chy5G090900 vs. ExPASy Swiss-Prot
Match: A7HWQ0 (50S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=rplK PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.6e-29
Identity = 66/141 (46.81%), Postives = 90/141 (63.83%), Query Frame = 0 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + +   I+L VPAG A P+PP+GPALGQ  LN+M FCK FNA TQK +   P+ V ITAF
Sbjct: 3   KKIEGYIKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAATQKMEQGMPIPVVITAF 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P  +++LKKAA + SGS  PG   A T++V    EIA+ K +D      
Sbjct: 63  SDRSFTFAMKTPPASYFLKKAAKVTSGSKTPGRASAGTVTVAQCREIAEAKMAD--LNAN 122

Query: 131 PLESICKSIIGTANSMGIKVL 152
            L+   K I G+A SMG++V+
Sbjct: 123 DLDQATKIIAGSARSMGLQVV 141

[Close]
BLAST of Chy5G090900 vs. ExPASy Swiss-Prot
Match: Q7VRP3 (50S ribosomal protein L11 OS=Blochmannia floridanus OX=203907 GN=rplK PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.0e-29
Identity = 65/148 (43.92%), Postives = 96/148 (64.86%), Query Frame = 0 

Query: 7   ILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVT 66
           ++ ++ V + I+L + A  A P+PP+GPALGQ  +N+M FCKDFN RT  ++    + V 
Sbjct: 1   MIVKKKVQSCIKLQIEARSATPSPPIGPALGQQGINIMKFCKDFNTRTADFEMGLILPVV 60

Query: 67  ITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPY 126
           IT + D +F F +K+P+  + LKKAAGI+SGS +P  V    + +  IYEIAK+K  D  
Sbjct: 61  ITVYVDRSFSFVIKTPTAVFLLKKAAGIKSGSEKPKCVSVGKVLISQIYEIAKIKLID-- 120

Query: 127 CQYMPLESICKSIIGTANSMGIKVLNEL 155
              + LES  KSI+GTA S+G++V + L
Sbjct: 121 MTSLNLESASKSIMGTARSIGLEVEDNL 146

[Close]
BLAST of Chy5G090900 vs. ExPASy TrEMBL
Match: A0A5A7T9U7 (54S ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G00710 PE=3 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.1e-81
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of Chy5G090900 vs. ExPASy TrEMBL
Match: A0A1S3BMZ5 (54S ribosomal protein L19, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491602 PE=3 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.1e-81
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of Chy5G090900 vs. ExPASy TrEMBL
Match: A0A0A0KWT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279840 PE=3 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.1e-81
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of Chy5G090900 vs. ExPASy TrEMBL
Match: A0A6J1BU21 (54S ribosomal protein L19, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111005691 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 3.8e-79
Identity = 149/155 (96.13%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGI+SGSSRPGHVVASTLS+KHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIDSGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ EL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]
BLAST of Chy5G090900 vs. ExPASy TrEMBL
Match: A0A6J1IPM9 (54S ribosomal protein L19, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111477675 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 148/155 (95.48%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGS RPGHVVASTL++KHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSGRPGHVVASTLTLKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ EL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]
BLAST of Chy5G090900 vs. NCBI nr
Match: XP_008449842.1 (PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis melo] >KAA0040080.1 54S ribosomal protein L19 [Cucumis melo var. makuwa] >TYK21704.1 54S ribosomal protein L19 [Cucumis melo var. makuwa])

HSP 1 Score: 308 bits (789), Expect = 1.23e-105
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155
           KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of Chy5G090900 vs. NCBI nr
Match: XP_004142176.1 (54S ribosomal protein L19, mitochondrial [Cucumis sativus] >KGN54055.1 hypothetical protein Csa_018122 [Cucumis sativus])

HSP 1 Score: 308 bits (788), Expect = 1.75e-105
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKP+
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155
           KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of Chy5G090900 vs. NCBI nr
Match: XP_038901904.1 (54S ribosomal protein L19, mitochondrial [Benincasa hispida])

HSP 1 Score: 306 bits (783), Expect = 1.01e-104
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ ELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 155

[Close]
BLAST of Chy5G090900 vs. NCBI nr
Match: KAG7034038.1 (mrpl19, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 302 bits (774), Expect = 2.38e-103
Identity = 150/155 (96.77%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTL+VKHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ EL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]
BLAST of Chy5G090900 vs. NCBI nr
Match: XP_022132985.1 (54S ribosomal protein L19, mitochondrial [Momordica charantia])

HSP 1 Score: 301 bits (771), Expect = 6.84e-103
Identity = 149/155 (96.13%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGI+SGSSRPGHVVASTLS+KHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIDSGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ EL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]
BLAST of Chy5G090900 vs. TAIR 10
Match: AT4G35490.1 (mitochondrial ribosomal protein L11 )

HSP 1 Score: 275.0 bits (702), Expect = 3.7e-74
Identity = 131/154 (85.06%), Postives = 147/154 (95.45%), Query Frame = 0 

Query: 2   ATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 61
           A  KEIL RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT
Sbjct: 3   AAAKEIL-RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 62

Query: 62  PMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVK 121
           PMAVTITAFKDN+FEFTVKSP+V+WY+KKAAG++ GS+RPGH+  +TLSV+H+YEIAKVK
Sbjct: 63  PMAVTITAFKDNSFEFTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVK 122

Query: 122 QSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 156
           Q+DP+CQYMPLESICKSIIGTANSMGIK++ +LE
Sbjct: 123 QTDPFCQYMPLESICKSIIGTANSMGIKIVQDLE 155

[Close]
BLAST of Chy5G090900 vs. TAIR 10
Match: AT1G32990.1 (plastid ribosomal protein l11 )

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-22
Identity = 60/140 (42.86%), Postives = 80/140 (57.14%), Query Frame = 0 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDTPMAVTITAF 70
           + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+NART   K    + V IT F
Sbjct: 72  KKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD-KAGYIIPVEITVF 131

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P  +  L KAAG+E GS  P       +++  +  IA  K  D  C   
Sbjct: 132 DDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNC--T 191

Query: 131 PLESICKSIIGTANSMGIKV 151
            +ES  + I GTA +MGI +
Sbjct: 192 TIESAMRIIAGTAANMGIDI 208

[Close]
BLAST of Chy5G090900 vs. TAIR 10
Match: AT5G51610.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 52.8 bits (125), Expect = 3.0e-07
Identity = 26/79 (32.91%), Postives = 46/79 (58.23%), Query Frame = 0 

Query: 72  DNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKVKQSDPYCQYMP 131
           D +F F +K+P  ++ L KAAG++ GS  P  +    +++  + +IA+VK  +  C    
Sbjct: 92  DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITIDQVRKIAEVKLPELNC--TT 151

Query: 132 LESICKSIIGTANSMGIKV 151
           + S  ++I GTA +MGI +
Sbjct: 152 IVSTMRTIAGTAGNMGIDI 168

The following BLAST results are available for this feature:
BLAST of Chy5G090900 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9UTK22.1e-3451.8554S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
O677582.1e-2947.1450S ribosomal protein L11 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rplK PE=... [more]
Q07KJ72.1e-2946.4350S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisA53) OX=31605... [more]
A7HWQ04.6e-2946.8150S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 130... [more]
Q7VRP36.0e-2943.9250S ribosomal protein L11 OS=Blochmannia floridanus OX=203907 GN=rplK PE=3 SV=1[more]
BLAST of Chy5G090900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T9U73.1e-8199.3554S ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3BMZ53.1e-8199.3554S ribosomal protein L19, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491602... [more]
A0A0A0KWT64.1e-8199.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279840 PE=3 SV=1[more]
A0A6J1BU213.8e-7996.1354S ribosomal protein L19, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1IPM91.1e-7895.4854S ribosomal protein L19, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
BLAST of Chy5G090900 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449842.11.23e-10599.35PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis melo] >KAA0040080.1... [more]
XP_004142176.11.75e-10599.3554S ribosomal protein L19, mitochondrial [Cucumis sativus] >KGN54055.1 hypotheti... [more]
XP_038901904.11.01e-10498.7154S ribosomal protein L19, mitochondrial [Benincasa hispida][more]
KAG7034038.12.38e-10396.77mrpl19, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022132985.16.84e-10396.1354S ribosomal protein L19, mitochondrial [Momordica charantia][more]
BLAST of Chy5G090900 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G35490.13.7e-7485.06mitochondrial ribosomal protein L11 [more]
AT1G32990.11.1e-2242.86plastid ribosomal protein l11 [more]
AT5G51610.13.0e-0732.91Ribosomal protein L11 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000911Ribosomal protein L11/L12SMARTSM00649rl11ccoord: 17..151
e-value: 1.1E-69
score: 247.5
IPR000911Ribosomal protein L11/L12PANTHERPTHR1166160S RIBOSOMAL PROTEIN L12coord: 1..155
IPR000911Ribosomal protein L11/L12HAMAPMF_00736Ribosomal_L11coord: 13..152
score: 24.781237
IPR000911Ribosomal protein L11/L12CDDcd00349Ribosomal_L11coord: 17..150
e-value: 2.75543E-65
score: 193.436
IPR006519Ribosomal protein L11, bacterial-typeTIGRFAMTIGR01632TIGR01632coord: 13..150
e-value: 2.3E-55
score: 184.4
IPR036769Ribosomal protein L11, C-terminal domain superfamilyGENE3D1.10.10.250coord: 78..151
e-value: 1.9E-29
score: 103.6
IPR036769Ribosomal protein L11, C-terminal domain superfamilySUPERFAMILY46906Ribosomal protein L11, C-terminal domaincoord: 76..150
IPR020784Ribosomal protein L11, N-terminalPFAMPF03946Ribosomal_L11_Ncoord: 13..75
e-value: 1.7E-24
score: 85.4
IPR020783Ribosomal protein L11, C-terminalPFAMPF00298Ribosomal_L11coord: 80..150
e-value: 1.4E-28
score: 99.2
IPR036796Ribosomal protein L11/L12, N-terminal domain superfamilyGENE3D3.30.1550.10coord: 11..77
e-value: 8.1E-27
score: 94.7
IPR036796Ribosomal protein L11/L12, N-terminal domain superfamilySUPERFAMILY54747Ribosomal L11/L12e N-terminal domaincoord: 13..80
NoneNo IPR availablePANTHERPTHR11661:SF139S RIBOSOMAL PROTEIN L11, MITOCHONDRIALcoord: 1..155
IPR020785Ribosomal protein L11, conserved sitePROSITEPS00359RIBOSOMAL_L11coord: 137..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy5G090900.1Chy5G090900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0070180 large ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome