Chy4G089610 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G089610
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH04: 27162082 .. 27162327 (+)
RNA-Seq Expression	Chy4G089610
Synteny	Chy4G089610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCGCTTAGAGTAAGAAGAAAAATAAAGCGAAGAATAAGGAAAAACAGTGTTCGAAGAACGCACTTGAAGAGATCGCCGTCCACCGTACGTGCTGCCAGGAAGAGGTTTCGCAATTGTATCCGAATTCGGTTACCCGCTTGCGTCGTCAGGGTGTTTGGCGCCGTCGTTACCTCAGTCGCGGAAGCAATCGGAGGAGTGAGCGTCATAGTTTCGGGGGGGAAATTATTTGAAGGGCAATAA

mRNA sequence

ATGAAAGCGCTTAGAGTAAGAAGAAAAATAAAGCGAAGAATAAGGAAAAACAGTGTTCGAAGAACGCACTTGAAGAGATCGCCGTCCACCGTACGTGCTGCCAGGAAGAGGTTTCGCAATTGTATCCGAATTCGGTTACCCGCTTGCGTCGTCAGGGTGTTTGGCGCCGTCGTTACCTCAGTCGCGGAAGCAATCGGAGGAGTGAGCGTCATAGTTTCGGGGGGGAAATTATTTGAAGGGCAATAA

Coding sequence (CDS)

ATGAAAGCGCTTAGAGTAAGAAGAAAAATAAAGCGAAGAATAAGGAAAAACAGTGTTCGAAGAACGCACTTGAAGAGATCGCCGTCCACCGTACGTGCTGCCAGGAAGAGGTTTCGCAATTGTATCCGAATTCGGTTACCCGCTTGCGTCGTCAGGGTGTTTGGCGCCGTCGTTACCTCAGTCGCGGAAGCAATCGGAGGAGTGAGCGTCATAGTTTCGGGGGGGAAATTATTTGAAGGGCAATAA

Protein sequence

MKALRVRRKIKRRIRKNSVRRTHLKRSPSTVRAARKRFRNCIRIRLPACVVRVFGAVVTSVAEAIGGVSVIVSGGKLFEGQ*

Homology

[Close]

BLAST of Chy4G089610 vs. ExPASy TrEMBL
Match: A0A0A0LCU2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731795 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.4e-24
Identity = 69/80 (86.25%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MKALRVRRKIKRRIRKNSVRRTHLKRSPSTVRAARKRFRNCIRIRLPACVVRVFGAVVTS 60
          MKALRVRRKIKRR RKNSV RTHLKRSPST RA RKRFRNCIRI+LPACVVRVFGAVVTS
Sbjct: 1  MKALRVRRKIKRRKRKNSVGRTHLKRSPSTGRADRKRFRNCIRIQLPACVVRVFGAVVTS 60

Query: 61 VAEAIGGVSVIVSGGKLFEG 81
          VAEA+GGVSVIV GG   +G
Sbjct: 61 VAEAVGGVSVIVLGGNYMKG 80

[Close]

BLAST of Chy4G089610 vs. ExPASy TrEMBL
Match: A0A5D3DN76 (Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00890 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.7e-15
Identity = 52/66 (78.79%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 16   KNSVRRTHLKRSPSTVRAARKRFRNCIRIRLPACVVRVFGAVVTSVAEAIGGVSVIVSGG 75
            K + +RTHLK SPSTVRAARKRFRNCIRIRL A VVRVF AVVTSVAEAIGGVS I  GG
Sbjct: 3218 KKTRQRTHLKSSPSTVRAARKRFRNCIRIRLLALVVRVFAAVVTSVAEAIGGVSAIDLGG 3277

Query: 76   KLFEGQ 82
              F+GQ
Sbjct: 3278 NYFKGQ 3283

[Close]

BLAST of Chy4G089610 vs. NCBI nr
Match: KGN58769.1 (hypothetical protein Csa_001940 [Cucumis sativus])

HSP 1 Score: 119 bits (298), Expect = 5.92e-33
Identity = 69/81 (85.19%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MKALRVRRKIKRRIRKNSVRRTHLKRSPSTVRAARKRFRNCIRIRLPACVVRVFGAVVTS 60
          MKALRVRRKIKRR RKNSV RTHLKRSPST RA RKRFRNCIRI+LPACVVRVFGAVVTS
Sbjct: 1  MKALRVRRKIKRRKRKNSVGRTHLKRSPSTGRADRKRFRNCIRIQLPACVVRVFGAVVTS 60

Query: 61 VAEAIGGVSVIVSGGKLFEGQ 81
          VAEA+GGVSVIV GG   +G 
Sbjct: 61 VAEAVGGVSVIVLGGNYMKGN 81

[Close]

BLAST of Chy4G089610 vs. NCBI nr
Match: TYK24972.1 (putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 7.08e-19
Identity = 52/66 (78.79%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 16   KNSVRRTHLKRSPSTVRAARKRFRNCIRIRLPACVVRVFGAVVTSVAEAIGGVSVIVSGG 75
            K + +RTHLK SPSTVRAARKRFRNCIRIRL A VVRVF AVVTSVAEAIGGVS I  GG
Sbjct: 3218 KKTRQRTHLKSSPSTVRAARKRFRNCIRIRLLALVVRVFAAVVTSVAEAIGGVSAIDLGG 3277

Query: 76   KLFEGQ 81
              F+GQ
Sbjct: 3278 NYFKGQ 3283

The following BLAST results are available for this feature:

BLAST of Chy4G089610 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G089610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCU2	5.4e-24	86.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731795 PE=4 SV=1	[more]
A0A5D3DN76	2.7e-15	78.79	Putative LRR receptor-like serine/threonine-protein kinase OS=Cucumis melo var. ...	[more]

BLAST of Chy4G089610 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58769.1	5.92e-33	85.19	hypothetical protein Csa_001940 [Cucumis sativus]	[more]
TYK24972.1	7.08e-19	78.79	putative LRR receptor-like serine/threonine-protein kinase [Cucumis melo var. ma...	[more]

BLAST of Chy4G089610 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G089610.1	Chy4G089610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity