Chy4G084480 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G084480
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH04: 23676159 .. 23676434 (+)
RNA-Seq Expression	Chy4G084480
Synteny	Chy4G084480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAATTCGTTGAATTGTTGGACGTAGGAGTAAGAATGGCGGCCAGATTTCACTCTCACTGTCCTCAAACTGCTCGGCTCTACTACCATCCTCCCTCCGATCACGACTCCGACGGCCACCACCACCACCACCACCACCATTATTTGCACCAGATTTTTCAGGCGTACGACAGCGGACACTCAACGGAGCTAGTGACGGCATATGGAATGAAGACGGTGGCCATGGATGGGAGTTTTGATGCGGAGAATGTGTTTCATTCGGCGGATTTTTGA

mRNA sequence

ATGGGGAAATTCGTTGAATTGTTGGACGTAGGAGTAAGAATGGCGGCCAGATTTCACTCTCACTGTCCTCAAACTGCTCGGCTCTACTACCATCCTCCCTCCGATCACGACTCCGACGGCCACCACCACCACCACCACCACCATTATTTGCACCAGATTTTTCAGGCGTACGACAGCGGACACTCAACGGAGCTAGTGACGGCATATGGAATGAAGACGGTGGCCATGGATGGGAGTTTTGATGCGGAGAATGTGTTTCATTCGGCGGATTTTTGA

Coding sequence (CDS)

ATGGGGAAATTCGTTGAATTGTTGGACGTAGGAGTAAGAATGGCGGCCAGATTTCACTCTCACTGTCCTCAAACTGCTCGGCTCTACTACCATCCTCCCTCCGATCACGACTCCGACGGCCACCACCACCACCACCACCACCATTATTTGCACCAGATTTTTCAGGCGTACGACAGCGGACACTCAACGGAGCTAGTGACGGCATATGGAATGAAGACGGTGGCCATGGATGGGAGTTTTGATGCGGAGAATGTGTTTCATTCGGCGGATTTTTGA

Protein sequence

MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHHHYLHQIFQAYDSGHSTELVTAYGMKTVAMDGSFDAENVFHSADF*

Homology

[Close]

BLAST of Chy4G084480 vs. ExPASy TrEMBL
Match: A0A0A0LEL3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G813040 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 88/91 (96.70%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1   MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHHHYLHQIFQAYDSG 60
           MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDG  HHHHHHYLHQIFQAYD G
Sbjct: 35  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDG--HHHHHHYLHQIFQAYDGG 94

Query: 61  HSTELVTAYGMKTVAMDGSFDAENVFHSADF 92
           HSTELVTAYGMKTVAMDGSFDAENVFHSADF
Sbjct: 95  HSTELVTAYGMKTVAMDGSFDAENVFHSADF 123

[Close]

BLAST of Chy4G084480 vs. ExPASy TrEMBL
Match: A0A5A7TQ55 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005960 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.3e-38
Identity = 84/95 (88.42%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHHHYLHQIFQAYD-- 60
          MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSD   HHHH HYLHQIFQAYD  
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSD---HHHHQHYLHQIFQAYDGG 60

Query: 61 --SGHSTELVTAYGMKTVAMDGSFDAENVFHSADF 92
             GHSTELVTAYGMKT+A DGSFDAENVFHSADF
Sbjct: 61 RHGGHSTELVTAYGMKTMATDGSFDAENVFHSADF 92

[Close]

BLAST of Chy4G084480 vs. ExPASy TrEMBL
Match: A0A1S3B7E5 (uncharacterized protein LOC103486822 OS=Cucumis melo OX=3656 GN=LOC103486822 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.3e-38
Identity = 84/95 (88.42%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHHHYLHQIFQAYD-- 60
          MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSD   HHHH HYLHQIFQAYD  
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSD---HHHHQHYLHQIFQAYDGG 60

Query: 61 --SGHSTELVTAYGMKTVAMDGSFDAENVFHSADF 92
             GHSTELVTAYGMKT+A DGSFDAENVFHSADF
Sbjct: 61 RHGGHSTELVTAYGMKTMATDGSFDAENVFHSADF 92

[Close]

BLAST of Chy4G084480 vs. ExPASy TrEMBL
Match: A0A6J1DN79 (uncharacterized protein LOC111021559 OS=Momordica charantia OX=3673 GN=LOC111021559 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.8e-21
Identity = 62/95 (65.26%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHHHYLHQIFQAYD-S 60
          M K VELLDVGVRMAARFH+HCPQTARLYYHPPSDHD         HHYLHQI  AYD  
Sbjct: 1  MAKLVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDD-------QHHYLHQILHAYDGG 60

Query: 61 GHST-ELVTAYGMKTV--AMDGSFDAENVFHSADF 92
          GHST   V+  G++T   A   SFD E VFH+ADF
Sbjct: 61 GHSTAHQVSGCGIETAARARARSFDTEIVFHTADF 88

[Close]

BLAST of Chy4G084480 vs. ExPASy TrEMBL
Match: A0A059DI68 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02353 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.4e-14
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHH 48
          MGK+VELLD+GVRMAARFHSHCPQTARLYYHPPS+HD D HHH HHH
Sbjct: 1  MGKYVELLDLGVRMAARFHSHCPQTARLYYHPPSNHD-DLHHHDHHH 46

[Close]

BLAST of Chy4G084480 vs. NCBI nr
Match: XP_011652134.1 (uncharacterized protein LOC105434988 [Cucumis sativus])

HSP 1 Score: 178 bits (452), Expect = 2.57e-56
Identity = 88/91 (96.70%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHHHYLHQIFQAYDSG 60
          MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHH  YLHQIFQAYD G
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHH--YLHQIFQAYDGG 60

Query: 61 HSTELVTAYGMKTVAMDGSFDAENVFHSADF 91
          HSTELVTAYGMKTVAMDGSFDAENVFHSADF
Sbjct: 61 HSTELVTAYGMKTVAMDGSFDAENVFHSADF 89

[Close]

BLAST of Chy4G084480 vs. NCBI nr
Match: KGN59359.1 (hypothetical protein Csa_002350 [Cucumis sativus])

HSP 1 Score: 178 bits (452), Expect = 7.47e-56
Identity = 88/91 (96.70%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1   MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHHHYLHQIFQAYDSG 60
           MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHH  YLHQIFQAYD G
Sbjct: 35  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHH--YLHQIFQAYDGG 94

Query: 61  HSTELVTAYGMKTVAMDGSFDAENVFHSADF 91
           HSTELVTAYGMKTVAMDGSFDAENVFHSADF
Sbjct: 95  HSTELVTAYGMKTVAMDGSFDAENVFHSADF 123

[Close]

BLAST of Chy4G084480 vs. NCBI nr
Match: XP_008443147.1 (PREDICTED: uncharacterized protein LOC103486822 [Cucumis melo] >KAA0043681.1 uncharacterized protein E6C27_scaffold236G00060 [Cucumis melo var. makuwa] >TYK25450.1 uncharacterized protein E5676_scaffold352G005960 [Cucumis melo var. makuwa])

HSP 1 Score: 163 bits (413), Expect = 2.51e-50
Identity = 84/95 (88.42%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHHHYLHQIFQAYDSG 60
          MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSD   HHHH HYLHQIFQAYD G
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSD---HHHHQHYLHQIFQAYDGG 60

Query: 61 ----HSTELVTAYGMKTVAMDGSFDAENVFHSADF 91
              HSTELVTAYGMKT+A DGSFDAENVFHSADF
Sbjct: 61 RHGGHSTELVTAYGMKTMATDGSFDAENVFHSADF 92

[Close]

BLAST of Chy4G084480 vs. NCBI nr
Match: KAG6580839.1 (hypothetical protein SDJN03_20841, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017595.1 hypothetical protein SDJN02_19461, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129 bits (324), Expect = 8.86e-37
Identity = 68/95 (71.58%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHHHYLHQIFQAYDS- 60
          M KFVELLDVGVRMAARFH+HCPQTARLYYHPPSDHD D HH+     YLHQ FQA D  
Sbjct: 1  MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGDNHHN-----YLHQFFQASDGF 60

Query: 61 ---GHSTELVTAYGMKTVAMDGSFDAENVFHSADF 91
             GHST+LVT  G++TVAM   FDAE VFH+ADF
Sbjct: 61 RHGGHSTDLVTGCGVETVAMARGFDAEIVFHTADF 90

[Close]

BLAST of Chy4G084480 vs. NCBI nr
Match: KAG7027749.1 (hypothetical protein SDJN02_08926, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120 bits (302), Expect = 2.31e-33
Identity = 65/89 (73.03%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHHHYLHQIFQAYDSG 60
          MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHD D   HHHHH+Y H +FQAYD G
Sbjct: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGD---HHHHHNYFHHVFQAYDGG 60

Query: 61 H----STELVTAYGMKTVAMDGSFDAENV 85
               ST+LV A G+ TVAM    DAE V
Sbjct: 61 RHAGPSTDLVEACGVDTVAMARGSDAEVV 86

[Close]

BLAST of Chy4G084480 vs. TAIR 10
Match: AT3G57450.1 (unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.9 bits (185), Expect = 1.9e-14
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHH 45
          MGK+ E+LDVGVR+AARFHSHCPQTARLYYHPPSD+    HHHH
Sbjct: 1  MGKYTEMLDVGVRIAARFHSHCPQTARLYYHPPSDN----HHHH 40

The following BLAST results are available for this feature:

BLAST of Chy4G084480 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G084480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEL3	1.3e-42	96.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G813040 PE=4 SV=1	[more]
A0A5A7TQ55	4.3e-38	88.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B7E5	4.3e-38	88.42	uncharacterized protein LOC103486822 OS=Cucumis melo OX=3656 GN=LOC103486822 PE=...	[more]
A0A6J1DN79	4.8e-21	65.26	uncharacterized protein LOC111021559 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A059DI68	7.4e-14	87.23	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02353 PE=4 SV...	[more]

BLAST of Chy4G084480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652134.1	2.57e-56	96.70	uncharacterized protein LOC105434988 [Cucumis sativus]	[more]
KGN59359.1	7.47e-56	96.70	hypothetical protein Csa_002350 [Cucumis sativus]	[more]
XP_008443147.1	2.51e-50	88.42	PREDICTED: uncharacterized protein LOC103486822 [Cucumis melo] >KAA0043681.1 unc...	[more]
KAG6580839.1	8.86e-37	71.58	hypothetical protein SDJN03_20841, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7027749.1	2.31e-33	73.03	hypothetical protein SDJN02_08926, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Chy4G084480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57450.1	1.9e-14	79.55	unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33983:SF13	SUBFAMILY NOT NAMED	coord: 1..90
None	No IPR available	PANTHER	PTHR33983	OS07G0185900 PROTEIN	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G084480.1	Chy4G084480.1	mRNA