Chy4G084370 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G084370
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	acanthoscurrin-2-like
Location	chrH04: 23574864 .. 23575214 (-)
RNA-Seq Expression	Chy4G084370
Synteny	Chy4G084370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATTACAAGCTTAATTTGATGTTGGTTATGGCTATGGCTATGGCTGCATTTGCACTCCATATTACTGCAAGAACTGTCCCAAATGATCAGGCTGCAGCAGAAGGGCTCAATGACCAAAAGAACTTCCTTAACTATGGTGGTGTTGGTGGTTTCTCTGGCATTGGTGACAGTGGACTCCCCTTCGGAGGCGGTATCGGCGGGGGAGGGCTCGGAGGAGGTGGTGGCTTGGGCGGGCTTGGTGGTGGCATTGGTGGATTCGGTGGGGTTGGCATTGGTGGCATTGGTGGCGGAGTTGGTGGTGGAGTGATAGGGGGAATTGGAGGGATTGGTGGTGGTGGTGGACTC

mRNA sequence

ATGGCAAATTACAAGCTTAATTTGATGTTGGTTATGGCTATGGCTATGGCTGCATTTGCACTCCATATTACTGCAAGAACTGTCCCAAATGATCAGGCTGCAGCAGAAGGGCTCAATGACCAAAAGAACTTCCTTAACTATGGTGGTGTTGGTGGTTTCTCTGGCATTGGTGACAGTGGACTCCCCTTCGGAGGCGGTATCGGCGGGGGAGGGCTCGGAGGAGGTGGTGGCTTGGGCGGGCTTGGTGGTGGCATTGGTGGATTCGGTGGGGTTGGCATTGGTGGCATTGGTGGCGGAGTTGGTGGTGGAGTGATAGGGGGAATTGGAGGGATTGGTGGTGGTGGTGGACTC

Coding sequence (CDS)

ATGGCAAATTACAAGCTTAATTTGATGTTGGTTATGGCTATGGCTATGGCTGCATTTGCACTCCATATTACTGCAAGAACTGTCCCAAATGATCAGGCTGCAGCAGAAGGGCTCAATGACCAAAAGAACTTCCTTAACTATGGTGGTGTTGGTGGTTTCTCTGGCATTGGTGACAGTGGACTCCCCTTCGGAGGCGGTATCGGCGGGGGAGGGCTCGGAGGAGGTGGTGGCTTGGGCGGGCTTGGTGGTGGCATTGGTGGATTCGGTGGGGTTGGCATTGGTGGCATTGGTGGCGGAGTTGGTGGTGGAGTGATAGGGGGAATTGGAGGGATTGGTGGTGGTGGTGGACTC

Protein sequence

MANYKLNLMLVMAMAMAAFALHITARTVPNDQAAAEGLNDQKNFLNYGGVGGFSGIGDSGLPFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGL

Homology

[Close]

BLAST of Chy4G084370 vs. ExPASy TrEMBL
Match: A0A0A0LEM4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814360 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.2e-37
Identity = 113/117 (96.58%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFALHITARTVPNDQAAAEGLNDQKNFLNYGGVGGFSGIGDSG 60
           MANYKLNLMLVMAMAMAAFA H+TARTVPNDQ AA+GLNDQKNFLNYGGVGGFSGIGDSG
Sbjct: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQ-AAKGLNDQKNFLNYGGVGGFSGIGDSG 60

Query: 61  LPFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGL 118
           LPFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGL
Sbjct: 61  LPFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGL 116

[Close]

BLAST of Chy4G084370 vs. ExPASy TrEMBL
Match: A0A5A7UCJ9 (Acanthoscurrin-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37G00690 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.0e-31
Identity = 104/117 (88.89%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFALHITARTVPNDQAAAEGLNDQKNFLNYGGVGGFSGIGDSG 60
           MANYKLNLMLV  MAMAA ALH+ ART PN+  AA+GLNDQKNFLNYGGVGGFSGIGD G
Sbjct: 1   MANYKLNLMLV--MAMAALALHVAARTAPNE--AAKGLNDQKNFLNYGGVGGFSGIGDGG 60

Query: 61  LPFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGL 118
           LPFGGG GGGGLGGGGGLGGLGGG+GGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGL
Sbjct: 61  LPFGGGFGGGGLGGGGGLGGLGGGVGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGL 113

[Close]

BLAST of Chy4G084370 vs. ExPASy TrEMBL
Match: A0A1S3BI24 (acanthoscurrin-2-like OS=Cucumis melo OX=3656 GN=LOC103489805 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.0e-31
Identity = 104/117 (88.89%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFALHITARTVPNDQAAAEGLNDQKNFLNYGGVGGFSGIGDSG 60
           MANYKLNLMLV  MAMAA ALH+ ART PN+  AA+GLNDQKNFLNYGGVGGFSGIGD G
Sbjct: 1   MANYKLNLMLV--MAMAALALHVAARTAPNE--AAKGLNDQKNFLNYGGVGGFSGIGDGG 60

Query: 61  LPFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGL 118
           LPFGGG GGGGLGGGGGLGGLGGG+GGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGL
Sbjct: 61  LPFGGGFGGGGLGGGGGLGGLGGGVGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGL 113

[Close]

BLAST of Chy4G084370 vs. ExPASy TrEMBL
Match: A0A6J1HG59 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111463979 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.4e-17
Identity = 80/107 (74.77%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFALHITARTVPNDQAAAEGLNDQKNFLNYGGVGGFSGIGDSG 60
           MAN KLNLML+MAMAMAAFALH+ ART P +  AA+GLNDQKNFL     GGFSGIGDSG
Sbjct: 1   MAN-KLNLMLIMAMAMAAFALHVAARTAPIE--AAKGLNDQKNFLG----GGFSGIGDSG 60

Query: 61  LPFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGG 108
           LPF      GGLGGGGGLGG+GGG+GGFGGVGIGGIG GVGG  +GG
Sbjct: 61  LPF------GGLGGGGGLGGIGGGLGGFGGVGIGGIGAGVGG--VGG 92

[Close]

BLAST of Chy4G084370 vs. ExPASy TrEMBL
Match: A0A6J1DV95 (acanthoscurrin-1-like OS=Momordica charantia OX=3673 GN=LOC111024760 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.3e-15
Identity = 82/118 (69.49%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 9   MLVMAMAMAAFALHITARTVPND--QAAAEGLNDQKNFLNYGGVGGFSGIGDSGLPFGG- 68
           ML++ +AMAAFA+  +AR  P D    A EGL DQKN LNYGG+GGFSGIGD+GLP GG 
Sbjct: 8   MLMLVVAMAAFAVQASARAAPTDHHDPAGEGLKDQKNLLNYGGLGGFSGIGDNGLPVGGI 67

Query: 69  ----GIGG--GGLGGG-GGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGG 117
               G+GG  GGLGGG GGLGGLGGGIGG+GG GIGGIG G+GGG +GGIGGIGGGGG
Sbjct: 68  GGVVGLGGGLGGLGGGAGGLGGLGGGIGGYGGGGIGGIGVGIGGGALGGIGGIGGGGG 125

[Close]

BLAST of Chy4G084370 vs. NCBI nr
Match: XP_011652144.1 (glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN59369.1 hypothetical protein Csa_000879 [Cucumis sativus])

HSP 1 Score: 167 bits (422), Expect = 7.04e-51
Identity = 113/117 (96.58%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFALHITARTVPNDQAAAEGLNDQKNFLNYGGVGGFSGIGDSG 60
           MANYKLNLMLVMAMAMAAFA H+TARTVPNDQAA +GLNDQKNFLNYGGVGGFSGIGDSG
Sbjct: 1   MANYKLNLMLVMAMAMAAFAFHVTARTVPNDQAA-KGLNDQKNFLNYGGVGGFSGIGDSG 60

Query: 61  LPFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGL 117
           LPFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGL
Sbjct: 61  LPFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGL 116

[Close]

BLAST of Chy4G084370 vs. NCBI nr
Match: XP_008447334.1 (PREDICTED: acanthoscurrin-2-like [Cucumis melo] >KAA0053623.1 acanthoscurrin-2-like [Cucumis melo var. makuwa] >TYJ97692.1 acanthoscurrin-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (372), Expect = 2.64e-43
Identity = 104/117 (88.89%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFALHITARTVPNDQAAAEGLNDQKNFLNYGGVGGFSGIGDSG 60
           MANYKLNLMLVMAMA  A ALH+ ART PN+  AA+GLNDQKNFLNYGGVGGFSGIGD G
Sbjct: 1   MANYKLNLMLVMAMA--ALALHVAARTAPNE--AAKGLNDQKNFLNYGGVGGFSGIGDGG 60

Query: 61  LPFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGL 117
           LPFGGG GGGGLGGGGGLGGLGGG+GGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGL
Sbjct: 61  LPFGGGFGGGGLGGGGGLGGLGGGVGGFGGVGIGGIGGGVGGGVIGGIGGIGGGGGL 113

[Close]

BLAST of Chy4G084370 vs. NCBI nr
Match: XP_038887967.1 (acanthoscurrin-1-like [Benincasa hispida])

HSP 1 Score: 131 bits (329), Expect = 8.98e-37
Identity = 96/115 (83.48%), Postives = 102/115 (88.70%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFALHITARTVPNDQAAAEGLNDQKNFLNYGGVGGFSGIGDSG 60
           MANYKLNLMLVMAMA  AFA+H+ ART PN+  A +GLNDQKNFLNYGG+GG  GIGDSG
Sbjct: 1   MANYKLNLMLVMAMA--AFAVHVAARTAPNE--AGKGLNDQKNFLNYGGIGGIGGIGDSG 60

Query: 61  LPFGGG--IGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGIGGIGG 113
           LPFGGG  IGGGGLGGGGGLGGLGGGIGG GGVGIGGIGGG+GGGVIGGIGG GG
Sbjct: 61  LPFGGGGGIGGGGLGGGGGLGGLGGGIGGVGGVGIGGIGGGIGGGVIGGIGGGGG 111

[Close]

BLAST of Chy4G084370 vs. NCBI nr
Match: XP_023511522.1 (glycine-rich protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102 bits (253), Expect = 1.89e-25
Identity = 79/102 (77.45%), Postives = 85/102 (83.33%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFALHITARTVPNDQAAAEGLNDQKNFLNYGGVGGFSGIGDSG 60
           MAN KLNLML+MAMAMAAFALH+ ART P +  AA+GLNDQKNFL+    GGFSGIGDSG
Sbjct: 1   MAN-KLNLMLIMAMAMAAFALHVAARTAPIE--AAKGLNDQKNFLS----GGFSGIGDSG 60

Query: 61  LPFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGG 102
           LPFGG      LGGGGGLGGLGGG+GGFGGVGIGGIG GVGG
Sbjct: 61  LPFGG------LGGGGGLGGLGGGLGGFGGVGIGGIGAGVGG 89

[Close]

BLAST of Chy4G084370 vs. NCBI nr
Match: XP_022963787.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 100 bits (250), Expect = 5.39e-25
Identity = 78/102 (76.47%), Postives = 84/102 (82.35%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFALHITARTVPNDQAAAEGLNDQKNFLNYGGVGGFSGIGDSG 60
           MAN KLNLML+MAMAMAAFALH+ ART P +  AA+GLNDQKNFL     GGFSGIGDSG
Sbjct: 1   MAN-KLNLMLIMAMAMAAFALHVAARTAPIE--AAKGLNDQKNFLG----GGFSGIGDSG 60

Query: 61  LPFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGG 102
           LPFGG      LGGGGGLGG+GGG+GGFGGVGIGGIG GVGG
Sbjct: 61  LPFGG------LGGGGGLGGIGGGLGGFGGVGIGGIGAGVGG 89

[Close]

BLAST of Chy4G084370 vs. TAIR 10
Match: AT4G29030.1 (Putative membrane lipoprotein )

HSP 1 Score: 42.7 bits (99), Expect = 2.3e-04
Identity = 62/118 (52.54%), Postives = 76/118 (64.41%), Query Frame = 0


Query: 1   MANYKLNLMLVMAMAMAAFALHITARTVPNDQAAAEGLNDQKNFLNYGGVGGFSGIGDSG 60
           MA +   + LV A+A    AL   AR VP       GL+DQKN+L YG  GG+SG+GD+G
Sbjct: 1   MAKWFFTIFLVFALAS---ALACGARNVP------VGLSDQKNYLGYG--GGYSGVGDNG 60

Query: 61  LPFGGGIGGGGLGGGGGLGGLGGGIGGFGGVGIGGIGGGVGGGVIGGI-GGIGGGGGL 118
           LPF GG+GGG  G GG L     G GGFGG G GG+GGG+GGG   G+ GG+GGG G+
Sbjct: 61  LPF-GGVGGGVSGPGGNL-----GYGGFGGAG-GGLGGGLGGGAGSGLGGGLGGGSGI 100

The following BLAST results are available for this feature:

BLAST of Chy4G084370 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G084370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEM4	1.2e-37	96.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G814360 PE=4 SV=1	[more]
A0A5A7UCJ9	1.0e-31	88.89	Acanthoscurrin-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A1S3BI24	1.0e-31	88.89	acanthoscurrin-2-like OS=Cucumis melo OX=3656 GN=LOC103489805 PE=4 SV=1	[more]
A0A6J1HG59	2.4e-17	74.77	glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111463979 PE=4 S...	[more]
A0A6J1DV95	1.3e-15	69.49	acanthoscurrin-1-like OS=Momordica charantia OX=3673 GN=LOC111024760 PE=4 SV=1	[more]

BLAST of Chy4G084370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652144.1	7.04e-51	96.58	glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN59369.1 hypoth...	[more]
XP_008447334.1	2.64e-43	88.89	PREDICTED: acanthoscurrin-2-like [Cucumis melo] >KAA0053623.1 acanthoscurrin-2-l...	[more]
XP_038887967.1	8.98e-37	83.48	acanthoscurrin-1-like [Benincasa hispida]	[more]
XP_023511522.1	1.89e-25	77.45	glycine-rich protein 5-like [Cucurbita pepo subsp. pepo]	[more]
XP_022963787.1	5.39e-25	76.47	glycine-rich protein 5-like [Cucurbita moschata]	[more]

BLAST of Chy4G084370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29030.1	2.3e-04	52.54	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 8..116
None	No IPR available	PANTHER	PTHR34463:SF11	GLYCINE-RICH PROTEIN	coord: 8..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G084370.1	Chy4G084370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane