Chy4G084030 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G084030
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	TFIIS N-terminal domain-containing protein
Location	chrH04: 23226976 .. 23229720 (-)
RNA-Seq Expression	Chy4G084030
Synteny	Chy4G084030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCAAGTCTGGGTCGCTTGATTCCTGGAGGAATTACTTCCGGAATGCGAATTCGGATATTTTTGGTATAATCGATTACGCAATTTTGGTGGCGGCTTCCGATTGTCCTAAGGAGTTCAGGTTGAGGAGAGATCGAATTGCAGAGCAGTTGTTCTCTTGCCGATTGACTCGTTGCTTGGGCTGTGACCGAGTGGAGCTGGCGGTGGCCGGAGACATCGACGGCGATGACGGCGAAACGGGTTTCAAGAGCGATTTCGCCAGAGATGGGTGTGAGTTTGAGGCTGGTGGGAGCAAAGAGAGCAAGGTTTATAGTAGTAGAGATGATATAGGGGAGATGAATTGCAACCGGGTTAGTAATTTTAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAGCAAGAATCTCAGATTGTAGGAGAGGTTTTGAGGATCAAAGAGATTCTTAATAATTTTGAAGATGAGGTAACGATTGCTTTCAATGTTTTCATTTTCTGGGATGTTTATTTGTTCCTCATGATGATCGTTGTTCTGTTTGTGTGTGTTGTTGTGCAGTCTGATCCGGTGTTGTTTGAATCACTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATACTTTGCAGGTGATTTGAATTGTTCTGTTTGCTCTTGCATTTCTCGAGGGGACTTAGTTTTTGTTGATTGTTTTTAGTTTCTAATGAAAATCTGGACTCAAGTCTTGAGGCGTTTTCTCCCTTTATCAGGCAACTGAGATTGGCAAAGCTGTTAATTGTCTTCGAAAGCATGGATCAAAGCGCATCCGCCATCTGGCTCGAGTTCTTATCATGTACTAAATCTTTCCTCCAACGTTCATTAAGTGTAGATGATATATGATGAATGTCCAAAGTGAATTTTCTGTTGACTCTCTTTATGGCACACCTTCAATATGCCTCCTTTCTTTTTTATTCTGTCCACATTTGTCTTCAAAGTTCTATACTTTGCTGGTGATTTGAATTGTTCACTTTGCTCTTCATGTCTTTATGGCACCTTCAAAGTTCTGTAGATCTTTTGTCTGAGTTTTATGTATGGCTTGCTGCATAGGATCAACAGAGAATAACCAATTCCGACCATTCCCTGTCCGTTATTTTGTTTATTGAGTGGATGAAGAGCTTTTCTAGCTCATCTGTTTCTTTACAACTTGTTGCTTACTAGGAGAGTTCCCCATCTGCCATGCCCTATCTTCTGAACTTTCTCATCGTATAGAGAAATCCGGTCTTTGATAAAGTTCACATTCATAATTCACTTAATGCAGTTAGTAGATAAGGAAGATATCATTTTCAAGATTCTTGTTGCTGCTCATTGTTACTTTACTTTGTTTGAGAGTAAAAGATCTACTTTTTGAATTGCAGGGAGTGGAAAGAAATGGTGGACGTGTGGGTACAAGCTACAGCTGCTGTTCAAGGTAGAGTTTGTTCACTACGCATTTCATCTATTATTTCTTGCCATTTTTCAAGAGTTCTTTATTGAGAAATGCTTTTGTTTTCGTCGACAAAAAGGTGCAGAGGTCACACCGGATTCCAAAAACAAGTCTGCTGCGGTGAAAGAAGAAGATGATTATGAAGAAGAAGGCCTTCCCTCTCCTCCTTTAGATGAAGCTGCATTTTTTACAACTCAGCCCACATCGATGGAGCTCTCACAAGTACGTCTCTATTTTCTTTTTGTATTCAGTTTTGCTATTCTGAAGAGAAGTTACCTACTTCAAGCTGCATCGGTTCTAATCAACTGTATTTTACTTTCCGTTCCTTGGTGAAGTTCTTTGATGGCATGGACGATGATGGAAGTGAGTTCATTATGCAATTTCTTATCTCTTCAGTTTTTACCATTTCTTAGATTCATGATTACGAATTGGGAACTATGTTGTTTCAGATCCTCGAAATAGTGGGGACTTCGTCAAGAACCGCAATAATGTGAGAAAAACTTCAAATGGCAATCAAAACCCTACAAGGTGTAACCAACAAACCACTCGAGAGGTTAATGTGCTTTCTAAGGAAAATAAGACTCAAATGAAGGAACAAGTTGTGAAGCCAAATAATAAGCCATCCTCAAACACAAATTCTGAGCTTTTGAGGCCACAGAAGCTAAGCTCAGAACAGAAGGACAACCATGAGAAGTTCCAGCGCAAATTGGAAAAACCTACAATCCCAAAGAGGAATCAACAAGATGTAAGTACAGGAATATCCAGATCGTAACTTGTAAAGTAATTTGGTTTGACATGTGCACTTTTACCTTATTTGTTTGATTTACGTTTACCAGAACTTCAAGTGCTCGGATGAGGTCGCGGTTCAAGTGAAACTAGAAGCTACAAAAAGGAAACTCCAAGAGAGTTACCAACAAGCTGAAAACGGTATTTGTTTAGTTTTCCATCCGTGCTTCTATCAATTCTGATACCGATTTCATGGGAAATATAAAAGGTTTATTACTTAACGAATCCAAGCAACAATAGCTAAATATTTTCGAGTTTGACAATTTGGTTAGGACATCCAAATTAATGGTTTTTTAAATGCATTGCATAAAATTTGCGACTATATTCTCATAAGTTCTCGAAAATTCTGACTCATGTTGTTTATTCAACAGCCAAGAAGCAGCGTACGATACAGGTTATGGAATTACACGATCTTCCCAAGCAAGGAATCGGCCACAGAAATCCACACCTAAAATCTGGAGGCTTCAACCGGAATTGGGCAAATGGACGGCGTTAG

mRNA sequence

ATGGCTGCCAAGTCTGGGTCGCTTGATTCCTGGAGGAATTACTTCCGGAATGCGAATTCGGATATTTTTGGTATAATCGATTACGCAATTTTGGTGGCGGCTTCCGATTGTCCTAAGGAGTTCAGGTTGAGGAGAGATCGAATTGCAGAGCAGTTGTTCTCTTGCCGATTGACTCGTTGCTTGGGCTGTGACCGAGTGGAGCTGGCGGTGGCCGGAGACATCGACGGCGATGACGGCGAAACGGGTTTCAAGAGCGATTTCGCCAGAGATGGGTGTGAGTTTGAGGCTGGTGGGAGCAAAGAGAGCAAGGTTTATAGTAGTAGAGATGATATAGGGGAGATGAATTGCAACCGGGTTAGTAATTTTAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAGCAAGAATCTCAGATTGTAGGAGAGGTTTTGAGGATCAAAGAGATTCTTAATAATTTTGAAGATGAGTCTGATCCGGTGTTGTTTGAATCACTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATACTTTGCAGGCAACTGAGATTGGCAAAGCTGTTAATTGTCTTCGAAAGCATGGATCAAAGCGCATCCGCCATCTGGCTCGAGTTCTTATCATGGAGTGGAAAGAAATGGTGGACGTGTGGGTACAAGCTACAGCTGCTGTTCAAGGTGCAGAGGTCACACCGGATTCCAAAAACAAGTCTGCTGCGGTGAAAGAAGAAGATGATTATGAAGAAGAAGGCCTTCCCTCTCCTCCTTTAGATGAAGCTGCATTTTTTACAACTCAGCCCACATCGATGGAGCTCTCACAATTCTTTGATGGCATGGACGATGATGGAAATCCTCGAAATAGTGGGGACTTCGTCAAGAACCGCAATAATGTGAGAAAAACTTCAAATGGCAATCAAAACCCTACAAGGTGTAACCAACAAACCACTCGAGAGGTTAATGTGCTTTCTAAGGAAAATAAGACTCAAATGAAGGAACAAGTTGTGAAGCCAAATAATAAGCCATCCTCAAACACAAATTCTGAGCTTTTGAGGCCACAGAAGCTAAGCTCAGAACAGAAGGACAACCATGAGAAGTTCCAGCGCAAATTGGAAAAACCTACAATCCCAAAGAGGAATCAACAAGATAACTTCAAGTGCTCGGATGAGGTCGCGGTTCAAGTGAAACTAGAAGCTACAAAAAGGAAACTCCAAGAGAGTTACCAACAAGCTGAAAACGCCAAGAAGCAGCGTACGATACAGGTTATGGAATTACACGATCTTCCCAAGCAAGGAATCGGCCACAGAAATCCACACCTAAAATCTGGAGGCTTCAACCGGAATTGGGCAAATGGACGGCGTTAG

Coding sequence (CDS)

ATGGCTGCCAAGTCTGGGTCGCTTGATTCCTGGAGGAATTACTTCCGGAATGCGAATTCGGATATTTTTGGTATAATCGATTACGCAATTTTGGTGGCGGCTTCCGATTGTCCTAAGGAGTTCAGGTTGAGGAGAGATCGAATTGCAGAGCAGTTGTTCTCTTGCCGATTGACTCGTTGCTTGGGCTGTGACCGAGTGGAGCTGGCGGTGGCCGGAGACATCGACGGCGATGACGGCGAAACGGGTTTCAAGAGCGATTTCGCCAGAGATGGGTGTGAGTTTGAGGCTGGTGGGAGCAAAGAGAGCAAGGTTTATAGTAGTAGAGATGATATAGGGGAGATGAATTGCAACCGGGTTAGTAATTTTAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAGCAAGAATCTCAGATTGTAGGAGAGGTTTTGAGGATCAAAGAGATTCTTAATAATTTTGAAGATGAGTCTGATCCGGTGTTGTTTGAATCACTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATACTTTGCAGGCAACTGAGATTGGCAAAGCTGTTAATTGTCTTCGAAAGCATGGATCAAAGCGCATCCGCCATCTGGCTCGAGTTCTTATCATGGAGTGGAAAGAAATGGTGGACGTGTGGGTACAAGCTACAGCTGCTGTTCAAGGTGCAGAGGTCACACCGGATTCCAAAAACAAGTCTGCTGCGGTGAAAGAAGAAGATGATTATGAAGAAGAAGGCCTTCCCTCTCCTCCTTTAGATGAAGCTGCATTTTTTACAACTCAGCCCACATCGATGGAGCTCTCACAATTCTTTGATGGCATGGACGATGATGGAAATCCTCGAAATAGTGGGGACTTCGTCAAGAACCGCAATAATGTGAGAAAAACTTCAAATGGCAATCAAAACCCTACAAGGTGTAACCAACAAACCACTCGAGAGGTTAATGTGCTTTCTAAGGAAAATAAGACTCAAATGAAGGAACAAGTTGTGAAGCCAAATAATAAGCCATCCTCAAACACAAATTCTGAGCTTTTGAGGCCACAGAAGCTAAGCTCAGAACAGAAGGACAACCATGAGAAGTTCCAGCGCAAATTGGAAAAACCTACAATCCCAAAGAGGAATCAACAAGATAACTTCAAGTGCTCGGATGAGGTCGCGGTTCAAGTGAAACTAGAAGCTACAAAAAGGAAACTCCAAGAGAGTTACCAACAAGCTGAAAACGCCAAGAAGCAGCGTACGATACAGGTTATGGAATTACACGATCTTCCCAAGCAAGGAATCGGCCACAGAAATCCACACCTAAAATCTGGAGGCTTCAACCGGAATTGGGCAAATGGACGGCGTTAG

Protein sequence

MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVAGDIDGDDGETGFKSDFARDGCEFEAGGSKESKVYSSRDDIGEMNCNRVSNFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAVQGAEVTPDSKNKSAAVKEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKTSNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSELLRPQKLSSEQKDNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGIGHRNPHLKSGGFNRNWANGRR*

Homology

[Close]

BLAST of Chy4G084030 vs. ExPASy Swiss-Prot
Match: Q9FHK9 (Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis thaliana OX=3702 GN=MED26B PE=2 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 1.6e-90
Identity = 231/466 (49.57%), Postives = 286/466 (61.37%), Query Frame = 0


Query: 5   SGSLDSWRNYF-RNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGC 64
           SGSLDSWR YF R  +SDIFGIID+AI+VAA+DCP +F+ RRD+IAE LFSCR+ RC+GC
Sbjct: 4   SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63

Query: 65  DRVELAVAGDIDGDDGETGFKSDFARDGCEFE-AGGSKESKVYSSRDDIGEMNCNRVSNF 124
           D +EL+V GD + + G TG          ++E AGGSKESK  SSR D    N   VSN+
Sbjct: 64  DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGD----NNQIVSNY 123

Query: 125 SFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQAT 184
           +F EAEAL+DEIE+ S +  EV RIKEIL N EDE + VL +SLR L+LM+L+VD L++T
Sbjct: 124 TFDEAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKST 183

Query: 185 EIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAVQGAEVTPDSKNKSAAVKE 244
           EIGKAVN LRKH S +IR LA+ LI EWKE+VD WV  T  + GAE TP+S N S     
Sbjct: 184 EIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVL--- 243

Query: 245 EDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKTSN 304
               EEE  PS P D    FT +P   E+S FFD +D DGNPRNS +   +R + R+  N
Sbjct: 244 ---DEEEAFPSLPYD-VDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQN 303

Query: 305 GNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNN-KPSSNTNSE-LLRPQKLSSEQKD 364
             +                 K   TQM+ Q     + KPSS T+ +   RP K S+EQ+ 
Sbjct: 304 IAKR----------------KPEGTQMRIQDAPFRSIKPSSATDFDGTRRPVKQSTEQRM 363

Query: 365 NHEKFQ-RKLEKPTIPKR------------NQQDNFKCSDEVAVQVKLEATKRKLQESYQ 424
            +E     K EKP I ++             QQ+  K  D      K E  KRKLQESYQ
Sbjct: 364 KNETVSVHKSEKPMIQRKPVVTEQKRKAPGPQQEKLKGLD---ADAKFEFAKRKLQESYQ 423

Query: 425 QAENAKKQRTIQVMELHDLPKQGIGHRNPHLKSGGF-NRNWANGRR 453
             ENAKKQRTIQV+E+  +PKQG   + P LK  G  NRNWANGR+
Sbjct: 424 HHENAKKQRTIQVLEM--IPKQGSAQK-PQLKRPGMSNRNWANGRK 436

[Close]

BLAST of Chy4G084030 vs. ExPASy Swiss-Prot
Match: F4J4Y5 (Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana OX=3702 GN=MED26A PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.5e-64
Identity = 183/432 (42.36%), Postives = 243/432 (56.25%), Query Frame = 0


Query: 5   SGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCD 64
           S SLD+WR YFR  +SDIFGIID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVAGDIDGDDGETGFKSDFARDGCEFEAGGSKESKVYSSRDDIGEMNCNRVSNFSF 124
            +EL++AGD            + A +      GG +                        
Sbjct: 67  HLELSIAGD------------EAAVEIVGVGGGGDR------------------------ 126

Query: 125 GEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQATEI 184
           G++   T E E+ S  V EV+RI++IL+N +DE D VL ESLR+LE M++SVD L+ TEI
Sbjct: 127 GDSGVATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEI 186

Query: 185 GKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAVQGAEVTPDSKNKSAAVKEED 244
           GKAVN LR+H S +I  LA+ L  EWK +VD W+     + G E TP+S N S       
Sbjct: 187 GKAVNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVI----- 246

Query: 245 DYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKTSNGN 304
             EEE  PSPP D    +  +P   ELSQ  D +D DGNPR+S   V++++  +  S+  
Sbjct: 247 -DEEEAFPSPPHD-LDIYAPEPNGFELSQILDCLDCDGNPRHS---VESKHERKSQSSAG 306

Query: 305 QNPTRCNQQTTREVNVLSK---ENKTQMKEQVVKPNNKPSSNTNSELLRPQKLSSEQKDN 364
           + P     + T + NV+ +   + +T+ +E  V+P  K S+    E  R  K S EQ  +
Sbjct: 307 RRP-----KGTNDANVVGRYCNDQQTRREEADVRP-MKHSATDVVEPKRQTKQSREQMVS 366

Query: 365 HEKFQRKLEKPTIPKRN----QQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRT 424
               QRK    T  KR     QQD  K  D      K E  KRKLQESY Q ENAK+QRT
Sbjct: 367 --AIQRKPTAVTEQKRKLAGPQQDKLKALDP---DSKFEFAKRKLQESYHQHENAKRQRT 379

Query: 425 IQVMELHDLPKQ 430
           IQV+E   +PKQ
Sbjct: 427 IQVLE--TIPKQ 379

[Close]

BLAST of Chy4G084030 vs. ExPASy Swiss-Prot
Match: F4KFC7 (Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana OX=3702 GN=MED26C PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.4e-22
Identity = 119/443 (26.86%), Postives = 187/443 (42.21%), Query Frame = 0


Query: 8   LDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRL-TRCLGCD-- 67
           LD +R+   NA  D++  ID AILVA+ D  +E + RRD I E+L++  +  +C  CD  
Sbjct: 3   LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCDFG 62

Query: 68  ----RVELAVAGDIDGDDGETGFKSDFARDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 127
                 E A+    +G   E   + D             +E    ++ +++ E + N   
Sbjct: 63  GGGNVTEAAIGRVNNGRVHEETEEED-------------EEGVTAAAEEEVREKSVNVED 122

Query: 128 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 187
           +  F     L D+ EQ+S     ++ IKE L +  D S+  L E L+ LE M ++   LQ
Sbjct: 123 DDDFDPFAGLFDD-EQKS-----IVEIKEKLED-PDLSEESLVELLQNLEDMDITFQALQ 182

Query: 188 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAVQGAEVTPDSKNKSAAV 247
            T+IG+ VN +RKH S  +R LA+ L+ +WKE VD WV+     Q  ++ P S      +
Sbjct: 183 ETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFN---QPGDLEPPS-----LI 242

Query: 248 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 307
            +ED   ++ L +    +   F   P                                  
Sbjct: 243 ADEDSPVQKALHNGSRQQVPDFGYSP---------------------------------- 302

Query: 308 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSELLRPQKLSSEQKD 367
                                            V  N   SS+ NS +  P++       
Sbjct: 303 ---------------------------------VPQNGYSSSSKNSNITEPERKPRPVAP 339

Query: 368 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 427
              +      KP+ P  +QQ   +  D+   +V  +  +++LQ++Y+QAENAKKQRTIQV
Sbjct: 363 QPRRESPSPAKPSRPSPSQQTIPR--DKEHKEVDFDTARKRLQQNYRQAENAKKQRTIQV 339

Query: 428 MELHDLPKQGIGHRNPHLKSGGF 444
           M++HD+PK          K GGF
Sbjct: 423 MDIHDIPKP---------KKGGF 339

[Close]

BLAST of Chy4G084030 vs. ExPASy Swiss-Prot
Match: Q8CB77 (Elongin-A OS=Mus musculus OX=10090 GN=Eloa PE=1 SV=3)

HSP 1 Score: 47.8 bits (112), Expect = 3.9e-04
Identity = 31/96 (32.29%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 162 LFESLRRLELMALSVDTLQATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQAT 221
           L + L++L ++ ++VD L  T +GK VN  RKH  +++ + AR L+ +WK++V V   + 
Sbjct: 26  LLKYLKKLSILPITVDILVETGVGKTVNSFRKH--EQVGNFARDLVAQWKKLVPVERNSE 85

Query: 222 AAVQGAEVTPDSKNKSAAVKEEDD----YEEEGLPS 254
           A  Q  E     K    A++ E++    Y+E   PS
Sbjct: 86  AEDQDFEKNNSRKRPRDALQREEELEGNYQESWKPS 119

[Close]

BLAST of Chy4G084030 vs. ExPASy Swiss-Prot
Match: Q14241 (Elongin-A OS=Homo sapiens OX=9606 GN=ELOA PE=1 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 5.1e-04
Identity = 29/86 (33.72%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 162 LFESLRRLELMALSVDTLQATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQAT 221
           L + L++L  + ++VD L  T +GK VN LRKH  + +   AR L+ +WK++V V   A 
Sbjct: 52  LLKYLKKLSTLPITVDILAETGVGKTVNSLRKH--EHVGSFARDLVAQWKKLVPVERNAE 111

Query: 222 AAVQGAEVTPDSKNKSAAVKEEDDYE 248
              Q  E +   K    A+++E++ E
Sbjct: 112 PDEQDFEKSNSRKRPRDALQKEEEME 135

[Close]

BLAST of Chy4G084030 vs. ExPASy TrEMBL
Match: A0A0A0LBK9 (TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G817210 PE=4 SV=1)

HSP 1 Score: 866.3 bits (2237), Expect = 5.6e-248
Identity = 447/452 (98.89%), Postives = 449/452 (99.34%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFARDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDGETGFKSDF RDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVD+WVQATAAVQGAEVTPDSKNKSAAV
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240

Query: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300
           KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSELLRPQKLSSEQKD 360
           SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNS LLR QKLS+EQKD
Sbjct: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKD 360

Query: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 453
           MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR
Sbjct: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 452

[Close]

BLAST of Chy4G084030 vs. ExPASy TrEMBL
Match: A0A5A7UDQ2 (Putative mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006410 PE=4 SV=1)

HSP 1 Score: 856.7 bits (2212), Expect = 4.5e-245
Identity = 443/452 (98.01%), Postives = 447/452 (98.89%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFARDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDGETGFKSDFA DGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESD VLFESLRRLELMALSVDTLQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVNCLRKHGSKRIRHLARVLIMEWK+MVDVWVQATAAVQGAEVTPDSK+KSAAV
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKSAAV 240

Query: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300
           KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSELLRPQKLSSEQKD 360
           SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNS LLR QKLS+EQKD
Sbjct: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKLSTEQKD 360

Query: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 453
           MELHDLPKQGIGHRNPHLKSGGFNR+W NGRR
Sbjct: 421 MELHDLPKQGIGHRNPHLKSGGFNRHWTNGRR 452

[Close]

BLAST of Chy4G084030 vs. ExPASy TrEMBL
Match: A0A1S3B7K4 (probable mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo OX=3656 GN=LOC103486863 PE=4 SV=1)

HSP 1 Score: 856.7 bits (2212), Expect = 4.5e-245
Identity = 443/452 (98.01%), Postives = 447/452 (98.89%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFARDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDGETGFKSDFA DGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESD VLFESLRRLELMALSVDTLQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVNCLRKHGSKRIRHLARVLIMEWK+MVDVWVQATAAVQGAEVTPDSK+KSAAV
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKSAAV 240

Query: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300
           KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSELLRPQKLSSEQKD 360
           SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNS LLR QKLS+EQKD
Sbjct: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKLSTEQKD 360

Query: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 453
           MELHDLPKQGIGHRNPHLKSGGFNR+W NGRR
Sbjct: 421 MELHDLPKQGIGHRNPHLKSGGFNRHWTNGRR 452

[Close]

BLAST of Chy4G084030 vs. ExPASy TrEMBL
Match: A0A6J1I7W1 (probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita maxima OX=3661 GN=LOC111469992 PE=4 SV=1)

HSP 1 Score: 715.7 bits (1846), Expect = 1.2e-202
Identity = 384/458 (83.84%), Postives = 411/458 (89.74%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKSGSLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFARDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGD+   D ETGFKSD A DG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDV---DCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           N+SFGEAEALTDEIEQES+IVGEVLRIKEILNNFE+ESD VLFESLRRLELMALSVD LQ
Sbjct: 121 NYSFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVN LRKHGSKRIRHL R LI EWKEMVD+WV+ATAAV G+EVTPDSK+  A+ 
Sbjct: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASE 240

Query: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300
           +EEDDY E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK R+N RKT
Sbjct: 241 QEEDDY-EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKT 300

Query: 301 SNGNQNPTRCNQQTTREVNVL------SKENKTQMKEQVVKPNNKPSSNTNSELLRPQKL 360
           SNG+QNP RC QQTTREVNV+      SK+NK+QMKEQVVKP NKP SN NS L RPQK 
Sbjct: 301 SNGSQNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKP-NKPPSNANSGLSRPQKP 360

Query: 361 SSEQKDNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKK 420
           S+ QKDNHEK QRK+EKPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKK
Sbjct: 361 STVQKDNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKK 420

Query: 421 QRTIQVMELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 453
           QRTIQVMELHD+PKQG+GHRN HLKSGG NR+W NGRR
Sbjct: 421 QRTIQVMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 453

[Close]

BLAST of Chy4G084030 vs. ExPASy TrEMBL
Match: A0A6J1FCK1 (probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita moschata OX=3662 GN=LOC111442859 PE=4 SV=1)

HSP 1 Score: 715.7 bits (1846), Expect = 1.2e-202
Identity = 380/452 (84.07%), Postives = 409/452 (90.49%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKSGSLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFARDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGD+   DGETGFKSD A DG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDV---DGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           N+SFGEAEALTDEIEQES+IVGEVLRIKEILNNFE+ESD VLFESLRRLELMALSVD LQ
Sbjct: 121 NYSFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVN LRKHGSKRIRHL R LI EWKEMVD+WV+ATAAV G+EVTPDSK+   + 
Sbjct: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSE 240

Query: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300
           +EEDDY E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK R+N RKT
Sbjct: 241 QEEDDY-EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKT 300

Query: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSELLRPQKLSSEQKD 360
           S+G+QNP RC QQTTREVNV++K+NK+QMKEQVVKP NKP SN NS   R QK S+ QKD
Sbjct: 301 SSGSQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKP-NKPPSNANSGFSRLQKPSTVQKD 360

Query: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEK QRK+EKPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 453
           MELHD+PKQG+GHRN HLKSGG NR+W NGRR
Sbjct: 421 MELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 447

[Close]

BLAST of Chy4G084030 vs. NCBI nr
Match: XP_004136624.1 (probable mediator of RNA polymerase II transcription subunit 26b [Cucumis sativus] >KGN59410.1 hypothetical protein Csa_002527 [Cucumis sativus])

HSP 1 Score: 865 bits (2235), Expect = 0.0
Identity = 447/452 (98.89%), Postives = 449/452 (99.34%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFARDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDGETGFKSDF RDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVD+WVQATAAVQGAEVTPDSKNKSAAV
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240

Query: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300
           KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSELLRPQKLSSEQKD 360
           SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNS LLR QKLS+EQKD
Sbjct: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKD 360

Query: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 452
           MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR
Sbjct: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 452

[Close]

BLAST of Chy4G084030 vs. NCBI nr
Match: XP_008443218.1 (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Cucumis melo] >KAA0053912.1 putative mediator of RNA polymerase II transcription subunit 26b [Cucumis melo var. makuwa] >TYK25493.1 putative mediator of RNA polymerase II transcription subunit 26b [Cucumis melo var. makuwa])

HSP 1 Score: 855 bits (2210), Expect = 2.79e-312
Identity = 443/452 (98.01%), Postives = 447/452 (98.89%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFARDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDGETGFKSDFA DGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESD VLFESLRRLELMALSVDTLQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVNCLRKHGSKRIRHLARVLIMEWK+MVDVWVQATAAVQGAEVTPDSK+KSAAV
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKSAAV 240

Query: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300
           KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSELLRPQKLSSEQKD 360
           SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNS LLR QKLS+EQKD
Sbjct: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKLSTEQKD 360

Query: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 452
           MELHDLPKQGIGHRNPHLKSGGFNR+W NGRR
Sbjct: 421 MELHDLPKQGIGHRNPHLKSGGFNRHWTNGRR 452

[Close]

BLAST of Chy4G084030 vs. NCBI nr
Match: XP_038904902.1 (probable mediator of RNA polymerase II transcription subunit 26b isoform X1 [Benincasa hispida])

HSP 1 Score: 816 bits (2108), Expect = 9.72e-297
Identity = 428/453 (94.48%), Postives = 439/453 (96.91%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFARDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDGETGFKSDFA DGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFE+ESD VLFESLRRLELMALSVDTLQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVN LRKHGSK IRHLARVLIMEWKEMVD WV+ATAAVQGAEVTPDSKNKSA+V
Sbjct: 181 ATEIGKAVNGLRKHGSKHIRHLARVLIMEWKEMVDEWVKATAAVQGAEVTPDSKNKSASV 240

Query: 241 KEEDDYEEE-GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK 300
           KEED+YEEE GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK
Sbjct: 241 KEEDNYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK 300

Query: 301 TSNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSELLRPQKLSSEQK 360
           TSNGNQNP R NQQT  EVNVL+KEN TQMKEQVVKPN +PSSNTNS LLRPQKLS+EQK
Sbjct: 301 TSNGNQNPVRSNQQTALEVNVLAKENMTQMKEQVVKPN-RPSSNTNSGLLRPQKLSTEQK 360

Query: 361 DNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           DNHEKFQRKL+KPTIPKRNQQ N+KCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKFQRKLDKPTIPKRNQQVNYKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 452
           VMELHDLPKQG+GHRNPHLKSGG+NRNWANGRR
Sbjct: 421 VMELHDLPKQGLGHRNPHLKSGGYNRNWANGRR 452

[Close]

BLAST of Chy4G084030 vs. NCBI nr
Match: XP_038904903.1 (probable mediator of RNA polymerase II transcription subunit 26b isoform X2 [Benincasa hispida])

HSP 1 Score: 807 bits (2085), Expect = 2.88e-293
Identity = 426/453 (94.04%), Postives = 437/453 (96.47%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFARDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGDIDGDDGETGFKSDFA DGCEFEAGGSKESKVYSSRDDIGEMNCNRVS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFE+ESD VLFESLRRLELMALSVDTLQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVN LRKHGSK IRHLARVLIMEWKEMVD WV+ATAAVQ  EVTPDSKNKSA+V
Sbjct: 181 ATEIGKAVNGLRKHGSKHIRHLARVLIMEWKEMVDEWVKATAAVQ--EVTPDSKNKSASV 240

Query: 241 KEEDDYEEE-GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK 300
           KEED+YEEE GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK
Sbjct: 241 KEEDNYEEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRK 300

Query: 301 TSNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSELLRPQKLSSEQK 360
           TSNGNQNP R NQQT  EVNVL+KEN TQMKEQVVKPN +PSSNTNS LLRPQKLS+EQK
Sbjct: 301 TSNGNQNPVRSNQQTALEVNVLAKENMTQMKEQVVKPN-RPSSNTNSGLLRPQKLSTEQK 360

Query: 361 DNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           DNHEKFQRKL+KPTIPKRNQQ N+KCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKFQRKLDKPTIPKRNQQVNYKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 452
           VMELHDLPKQG+GHRNPHLKSGG+NRNWANGRR
Sbjct: 421 VMELHDLPKQGLGHRNPHLKSGGYNRNWANGRR 450

[Close]

BLAST of Chy4G084030 vs. NCBI nr
Match: XP_023539160.1 (probable mediator of RNA polymerase II transcription subunit 26b [Cucurbita pepo subsp. pepo])

HSP 1 Score: 721 bits (1861), Expect = 3.36e-259
Identity = 383/452 (84.73%), Postives = 410/452 (90.71%), Query Frame = 0


Query: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKS SLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSASLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDIDGDDGETGFKSDFARDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120
           LGCDRVELAVAGD+DG   ETGFKSD A DG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDVDG---ETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120

Query: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180
           N+SFGEAEALTDEIEQES+IVGEVLRIKEILNNFE+ESD VLFESLRRLELMALSVD LQ
Sbjct: 121 NYSFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180

Query: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAVQGAEVTPDSKNKSAAV 240
           ATEIGKAVN LRKHGSKRIRHL R LI EWKEMVD+WV+ATAAV G+EVTPDSK+  A+ 
Sbjct: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASE 240

Query: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300
           +EEDDYE+ GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK  +N RKT
Sbjct: 241 QEEDDYED-GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKHDNGRKT 300

Query: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSELLRPQKLSSEQKD 360
           SNG+QNP RC QQTTREVNV++K+NK+QMKEQVVKPN KP SN NS L RPQK SS QKD
Sbjct: 301 SNGSQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPN-KPPSNANSGLSRPQKPSSVQKD 360

Query: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEK QRK+EKPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 452
           MELHD+PKQG+GHRN HLKSGG NR+W NGRR
Sbjct: 421 MELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 447

[Close]

BLAST of Chy4G084030 vs. TAIR 10
Match: AT5G05140.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 334.7 bits (857), Expect = 1.1e-91
Identity = 231/466 (49.57%), Postives = 286/466 (61.37%), Query Frame = 0


Query: 5   SGSLDSWRNYF-RNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGC 64
           SGSLDSWR YF R  +SDIFGIID+AI+VAA+DCP +F+ RRD+IAE LFSCR+ RC+GC
Sbjct: 4   SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63

Query: 65  DRVELAVAGDIDGDDGETGFKSDFARDGCEFE-AGGSKESKVYSSRDDIGEMNCNRVSNF 124
           D +EL+V GD + + G TG          ++E AGGSKESK  SSR D    N   VSN+
Sbjct: 64  DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGD----NNQIVSNY 123

Query: 125 SFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQAT 184
           +F EAEAL+DEIE+ S +  EV RIKEIL N EDE + VL +SLR L+LM+L+VD L++T
Sbjct: 124 TFDEAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKST 183

Query: 185 EIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAVQGAEVTPDSKNKSAAVKE 244
           EIGKAVN LRKH S +IR LA+ LI EWKE+VD WV  T  + GAE TP+S N S     
Sbjct: 184 EIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVL--- 243

Query: 245 EDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKTSN 304
               EEE  PS P D    FT +P   E+S FFD +D DGNPRNS +   +R + R+  N
Sbjct: 244 ---DEEEAFPSLPYD-VDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQN 303

Query: 305 GNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNN-KPSSNTNSE-LLRPQKLSSEQKD 364
             +                 K   TQM+ Q     + KPSS T+ +   RP K S+EQ+ 
Sbjct: 304 IAKR----------------KPEGTQMRIQDAPFRSIKPSSATDFDGTRRPVKQSTEQRM 363

Query: 365 NHEKFQ-RKLEKPTIPKR------------NQQDNFKCSDEVAVQVKLEATKRKLQESYQ 424
            +E     K EKP I ++             QQ+  K  D      K E  KRKLQESYQ
Sbjct: 364 KNETVSVHKSEKPMIQRKPVVTEQKRKAPGPQQEKLKGLD---ADAKFEFAKRKLQESYQ 423

Query: 425 QAENAKKQRTIQVMELHDLPKQGIGHRNPHLKSGGF-NRNWANGRR 453
             ENAKKQRTIQV+E+  +PKQG   + P LK  G  NRNWANGR+
Sbjct: 424 HHENAKKQRTIQVLEM--IPKQGSAQK-PQLKRPGMSNRNWANGRK 436

[Close]

BLAST of Chy4G084030 vs. TAIR 10
Match: AT3G10820.2 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 248.4 bits (633), Expect = 1.1e-65
Identity = 183/432 (42.36%), Postives = 243/432 (56.25%), Query Frame = 0


Query: 5   SGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCD 64
           S SLD+WR YFR  +SDIFGIID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVAGDIDGDDGETGFKSDFARDGCEFEAGGSKESKVYSSRDDIGEMNCNRVSNFSF 124
            +EL++AGD            + A +      GG +                        
Sbjct: 67  HLELSIAGD------------EAAVEIVGVGGGGDR------------------------ 126

Query: 125 GEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQATEI 184
           G++   T E E+ S  V EV+RI++IL+N +DE D VL ESLR+LE M++SVD L+ TEI
Sbjct: 127 GDSGVATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEI 186

Query: 185 GKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAVQGAEVTPDSKNKSAAVKEED 244
           GKAVN LR+H S +I  LA+ L  EWK +VD W+     + G E TP+S N S       
Sbjct: 187 GKAVNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVI----- 246

Query: 245 DYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKTSNGN 304
             EEE  PSPP D    +  +P   ELSQ  D +D DGNPR+S   V++++  +  S+  
Sbjct: 247 -DEEEAFPSPPHD-LDIYAPEPNGFELSQILDCLDCDGNPRHS---VESKHERKSQSSAG 306

Query: 305 QNPTRCNQQTTREVNVLSK---ENKTQMKEQVVKPNNKPSSNTNSELLRPQKLSSEQKDN 364
           + P     + T + NV+ +   + +T+ +E  V+P  K S+    E  R  K S EQ  +
Sbjct: 307 RRP-----KGTNDANVVGRYCNDQQTRREEADVRP-MKHSATDVVEPKRQTKQSREQMVS 366

Query: 365 HEKFQRKLEKPTIPKRN----QQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRT 424
               QRK    T  KR     QQD  K  D      K E  KRKLQESY Q ENAK+QRT
Sbjct: 367 --AIQRKPTAVTEQKRKLAGPQQDKLKALDP---DSKFEFAKRKLQESYHQHENAKRQRT 379

Query: 425 IQVMELHDLPKQ 430
           IQV+E   +PKQ
Sbjct: 427 IQVLE--TIPKQ 379

[Close]

BLAST of Chy4G084030 vs. TAIR 10
Match: AT3G10820.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 203.4 bits (516), Expect = 3.9e-52
Identity = 121/269 (44.98%), Postives = 158/269 (58.74%), Query Frame = 0


Query: 5   SGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCD 64
           S SLD+WR YFR  +SDIFGIID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVAGDIDGDDGETGFKSDFARDGCEFEAGGSKESKVYSSRDDIGEMNCNRVSNFSF 124
            +EL++AGD            + A +      GG +                        
Sbjct: 67  HLELSIAGD------------EAAVEIVGVGGGGDR------------------------ 126

Query: 125 GEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQATEI 184
           G++   T E E+ S  V EV+RI++IL+N +DE D VL ESLR+LE M++SVD L+ TEI
Sbjct: 127 GDSGVATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEI 186

Query: 185 GKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAVQGAEVTPDSKNKSAAVKEED 244
           GKAVN LR+H S +I  LA+ L  EWK +VD W+     + G E TP+S N S       
Sbjct: 187 GKAVNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVI----- 232

Query: 245 DYEEEGLPSPPLDEAAFFTTQPTSMELSQ 274
             EEE  PSPP D    +  +P   ELSQ
Sbjct: 247 -DEEEAFPSPPHD-LDIYAPEPNGFELSQ 232

[Close]

BLAST of Chy4G084030 vs. TAIR 10
Match: AT5G09850.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 109.0 bits (271), Expect = 1.0e-23
Identity = 119/443 (26.86%), Postives = 187/443 (42.21%), Query Frame = 0


Query: 8   LDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRL-TRCLGCD-- 67
           LD +R+   NA  D++  ID AILVA+ D  +E + RRD I E+L++  +  +C  CD  
Sbjct: 3   LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCDFG 62

Query: 68  ----RVELAVAGDIDGDDGETGFKSDFARDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 127
                 E A+    +G   E   + D             +E    ++ +++ E + N   
Sbjct: 63  GGGNVTEAAIGRVNNGRVHEETEEED-------------EEGVTAAAEEEVREKSVNVED 122

Query: 128 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 187
           +  F     L D+ EQ+S     ++ IKE L +  D S+  L E L+ LE M ++   LQ
Sbjct: 123 DDDFDPFAGLFDD-EQKS-----IVEIKEKLED-PDLSEESLVELLQNLEDMDITFQALQ 182

Query: 188 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWVQATAAVQGAEVTPDSKNKSAAV 247
            T+IG+ VN +RKH S  +R LA+ L+ +WKE VD WV+     Q  ++ P S      +
Sbjct: 183 ETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFN---QPGDLEPPS-----LI 242

Query: 248 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 307
            +ED   ++ L +    +   F   P                                  
Sbjct: 243 ADEDSPVQKALHNGSRQQVPDFGYSP---------------------------------- 302

Query: 308 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSELLRPQKLSSEQKD 367
                                            V  N   SS+ NS +  P++       
Sbjct: 303 ---------------------------------VPQNGYSSSSKNSNITEPERKPRPVAP 339

Query: 368 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 427
              +      KP+ P  +QQ   +  D+   +V  +  +++LQ++Y+QAENAKKQRTIQV
Sbjct: 363 QPRRESPSPAKPSRPSPSQQTIPR--DKEHKEVDFDTARKRLQQNYRQAENAKKQRTIQV 339

Query: 428 MELHDLPKQGIGHRNPHLKSGGF 444
           M++HD+PK          K GGF
Sbjct: 423 MDIHDIPKP---------KKGGF 339

[Close]

BLAST of Chy4G084030 vs. TAIR 10
Match: AT3G48060.1 (BAH domain ;TFIIS helical bundle-like domain )

HSP 1 Score: 42.7 bits (99), Expect = 8.9e-04
Identity = 23/62 (37.10%), Postives = 35/62 (56.45%), Query Frame = 0


Query: 159 DPVLFESLRRLELMALSVDTLQATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDVWV 218
           D  L   LR L+ + ++++ LQ   IGK+VN LR H +  I   AR L+  WK+ V+  +
Sbjct: 354 DDFLLVLLRALDKLPVNLNALQTCNIGKSVNHLRSHKNSEIGKKARSLVDTWKKRVEAEM 413

Query: 219 QA 221
            A
Sbjct: 414 DA 415

The following BLAST results are available for this feature:

BLAST of Chy4G084030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHK9	1.6e-90	49.57	Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis ...	[more]
F4J4Y5	1.5e-64	42.36	Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis ...	[more]
F4KFC7	1.4e-22	26.86	Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis ...	[more]
Q8CB77	3.9e-04	32.29	Elongin-A OS=Mus musculus OX=10090 GN=Eloa PE=1 SV=3	[more]
Q14241	5.1e-04	33.72	Elongin-A OS=Homo sapiens OX=9606 GN=ELOA PE=1 SV=2	[more]

BLAST of Chy4G084030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBK9	5.6e-248	98.89	TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G8...	[more]
A0A5A7UDQ2	4.5e-245	98.01	Putative mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo...	[more]
A0A1S3B7K4	4.5e-245	98.01	probable mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo...	[more]
A0A6J1I7W1	1.2e-202	83.84	probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita ma...	[more]
A0A6J1FCK1	1.2e-202	84.07	probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita mo...	[more]

BLAST of Chy4G084030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136624.1	0.0	98.89	probable mediator of RNA polymerase II transcription subunit 26b [Cucumis sativu...	[more]
XP_008443218.1	2.79e-312	98.01	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Cuc...	[more]
XP_038904902.1	9.72e-297	94.48	probable mediator of RNA polymerase II transcription subunit 26b isoform X1 [Ben...	[more]
XP_038904903.1	2.88e-293	94.04	probable mediator of RNA polymerase II transcription subunit 26b isoform X2 [Ben...	[more]
XP_023539160.1	3.36e-259	84.73	probable mediator of RNA polymerase II transcription subunit 26b [Cucurbita pepo...	[more]

BLAST of Chy4G084030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05140.1	1.1e-91	49.57	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.2	1.1e-65	42.36	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.1	3.9e-52	44.98	Transcription elongation factor (TFIIS) family protein	[more]
AT5G09850.1	1.0e-23	26.86	Transcription elongation factor (TFIIS) family protein	[more]
AT3G48060.1	8.9e-04	37.10	BAH domain ;TFIIS helical bundle-like domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 392..419
None	No IPR available	COILS	Coil	Coil	coord: 311..331
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 353..382
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 273..382
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 288..352
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 428..452
None	No IPR available	PANTHER	PTHR46554:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED	coord: 1..451
None	No IPR available	CDD	cd00183	TFIIS_I	coord: 143..215 e-value: 5.4319E-20 score: 81.971
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 141..216 e-value: 2.0E-15 score: 67.2
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 133..226 e-value: 7.6E-21 score: 75.7
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 139..223
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 166..214 e-value: 1.2E-11 score: 44.4
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 142..217 score: 21.407354
IPR044805	Mediator of RNA polymerase II transcription subunit 26a/b-like	PANTHER	PTHR46554	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED	coord: 1..451

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G084030.1	Chy4G084030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus