Chy4G083760 (gene) Cucumber (hystrix) v1

Overview


Name	Chy4G083760
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH04: 22947581 .. 22947988 (+)
RNA-Seq Expression	Chy4G083760
Synteny	Chy4G083760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAAACGATCGAGTGCGGAACGCTGTTTCAGACGTTTCCACTCTCATCGTCCCTTACAACAAACAGGTTTTATTTTTTCATTCAAGATTTTTCTTCCATGTCTCCCCACCCAAAAAAAAAAAACGCCGGTGGAGGCTTTGCCTACGTTTTTCTTCAGACCAAAATTCTGGTAGTGTTGGTTGCATAAATTTCACTAACATCTTTCTTTGGTTAGATCTTTCGACGACGGTTTTGACGTAGGAAGCAAGAGAAGAGGCATATACGACATCATCTATATTTGATGGTAAGCTATTGCAGTCTAAGTTCAGTGATGGTTTTACTTCTGTGGACAGCTTCTTTGCTTCTGTTGCCACTGGTGGTGCCGCCGCTTCCTCCGCCACCGTTGGCGGTTCTCGGGCTGCCG

mRNA sequence

ATGGTGCAAACGATCGAGTGCGGAACGCTGTTTCAGACGTTTCCACTCTCATCGTCCCTTACAACAAACAGATCTTTCGACGACGGTTTTGACGTAGGAAGCAAGAGAAGAGGCATATACGACTCTAAGTTCAGTGATGGTTTTACTTCTGTGGACAGCTTCTTTGCTTCTGTTGCCACTGGTGGTGCCGCCGCTTCCTCCGCCACCGTTGGCGGTTCTCGGGCTGCCG

Coding sequence (CDS)

ATGGTGCAAACGATCGAGTGCGGAACGCTGTTTCAGACGTTTCCACTCTCATCGTCCCTTACAACAAACAGATCTTTCGACGACGGTTTTGACGTAGGAAGCAAGAGAAGAGGCATATACGACTCTAAGTTCAGTGATGGTTTTACTTCTGTGGACAGCTTCTTTGCTTCTGTTGCCACTGGTGGTGCCGCCGCTTCCTCCGCCACCGTTGGCGGTTCTCGGGCTGCCG

Protein sequence

MVQTIECGTLFQTFPLSSSLTTNRSFDDGFDVGSKRRGIYDSKFSDGFTSVDSFFASVATGGAAASSATVGGSRAAX

Homology

[Close]

BLAST of Chy4G083760 vs. ExPASy TrEMBL
Match: A0A0A0LBQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821040 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.4e-28
Identity = 72/76 (94.74%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1  MVQTIECGTLFQTFPLSSSLTTNRSFDDGFDVGSKRRGIYDSKFSDGFTSVDSFFASVAT 60
          MVQTIECGTLFQTFPLSS LTT RSFDDGFDVG KRRGIYDSKFSDGFTSVDSFFASVAT
Sbjct: 1  MVQTIECGTLFQTFPLSSFLTTKRSFDDGFDVGGKRRGIYDSKFSDGFTSVDSFFASVAT 60

Query: 61 GGAAASSATVGGSRAA 77
          GGAAASSATVG SRAA
Sbjct: 61 GGAAASSATVGDSRAA 76

[Close]

BLAST of Chy4G083760 vs. ExPASy TrEMBL
Match: A0A5D3DPE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006780 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 61/87 (70.11%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 1  MVQTIECGTLFQTFPLSSSLTTNRSFDDGFDVGSK------RRGIYD-----SKFSDGFT 60
          MVQTIEC TLFQTFPL S LT  RS DDGFDV  K         I+D     SKFSDGFT
Sbjct: 1  MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFT 60

Query: 61 SVDSFFASVATGGAAASSATVGGSRAA 77
           VDSFFASVATGGAAASS TVG SRAA
Sbjct: 61 CVDSFFASVATGGAAASSTTVGSSRAA 87

[Close]

BLAST of Chy4G083760 vs. ExPASy TrEMBL
Match: A0A1S3B754 (uncharacterized protein LOC103486890 OS=Cucumis melo OX=3656 GN=LOC103486890 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 61/87 (70.11%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 1  MVQTIECGTLFQTFPLSSSLTTNRSFDDGFDVGSK------RRGIYD-----SKFSDGFT 60
          MVQTIEC TLFQTFPL S LT  RS DDGFDV  K         I+D     SKFSDGFT
Sbjct: 1  MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFT 60

Query: 61 SVDSFFASVATGGAAASSATVGGSRAA 77
           VDSFFASVATGGAAASS TVG SRAA
Sbjct: 61 CVDSFFASVATGGAAASSTTVGSSRAA 87

[Close]

BLAST of Chy4G083760 vs. NCBI nr
Match: KAE8651183.1 (hypothetical protein Csa_002001, partial [Cucumis sativus])

HSP 1 Score: 134 bits (337), Expect = 3.31e-39
Identity = 72/76 (94.74%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1  MVQTIECGTLFQTFPLSSSLTTNRSFDDGFDVGSKRRGIYDSKFSDGFTSVDSFFASVAT 60
          MVQTIECGTLFQTFPLSS LTT RSFDDGFDVG KRRGIYDSKFSDGFTSVDSFFASVAT
Sbjct: 1  MVQTIECGTLFQTFPLSSFLTTKRSFDDGFDVGGKRRGIYDSKFSDGFTSVDSFFASVAT 60

Query: 61 GGAAASSATVGGSRAA 76
          GGAAASSATVG SRAA
Sbjct: 61 GGAAASSATVGDSRAA 76

[Close]

BLAST of Chy4G083760 vs. NCBI nr
Match: XP_008443266.1 (PREDICTED: uncharacterized protein LOC103486890 [Cucumis melo] >KAA0053878.1 uncharacterized protein E6C27_scaffold135G002710 [Cucumis melo var. makuwa] >TYK25526.1 uncharacterized protein E5676_scaffold352G006780 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 9.64e-24
Identity = 61/87 (70.11%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 1  MVQTIECGTLFQTFPLSSSLTTNRSFDDGFDVGSK------RRGIYD-----SKFSDGFT 60
          MVQTIEC TLFQTFPL S LT  RS DDGFDV  K         I+D     SKFSDGFT
Sbjct: 1  MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFT 60

Query: 61 SVDSFFASVATGGAAASSATVGGSRAA 76
           VDSFFASVATGGAAASS TVG SRAA
Sbjct: 61 CVDSFFASVATGGAAASSTTVGSSRAA 87

The following BLAST results are available for this feature:

BLAST of Chy4G083760 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G083760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBQ9	4.4e-28	94.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821040 PE=4 SV=1	[more]
A0A5D3DPE0	1.3e-16	70.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B754	1.3e-16	70.11	uncharacterized protein LOC103486890 OS=Cucumis melo OX=3656 GN=LOC103486890 PE=...	[more]

BLAST of Chy4G083760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651183.1	3.31e-39	94.74	hypothetical protein Csa_002001, partial [Cucumis sativus]	[more]
XP_008443266.1	9.64e-24	70.11	PREDICTED: uncharacterized protein LOC103486890 [Cucumis melo] >KAA0053878.1 unc...	[more]

BLAST of Chy4G083760 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy4G083760.1	Chy4G083760.1	mRNA